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David Stern

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Anatomy

Chloroplasts

Living Beings

Chemicals & Drugs

Concepts & Ideas

Physiology

Genes & Molecular Sequences

Plant Genes

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Co-Publications
Name
17
Kindle, KL
9
Drager, Robert
7
Bollenbach, Thomas
7
Higgs, David
7
Wollman, Francis-André
6
Schuster, Gadi
4
Rott, Ruth
4
Rymarquis, Linda
4
Kuras, Richard
4
Monde, RA
4
Girard-Bascou, Jacqueline
4
Cahoon, Bruce
4
Caoile, AG
3
Lupold, DS
3
Lerbs-Mache, Silva

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Publications

TOP 3
Marchive Chloe; Yehudai-Resheff Shlomit; Germain Arnaud; Fei Zhangjun; Jiang Xingshan; Judkins Joshua; Wu Hong; Fernie Alisdair R; Fait Aaron; Stern David B
Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis.
Zimmer Sarah L; Schein Aleks; Zipor Gadi; Stern David B; Schuster Gadi
Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.
Bollenbach Thomas J; Sharwood Robert E; Gutierrez Ryan; Lerbs-Mache Silva; Stern David B
The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.

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All Publications

2009: Marchive Chloe; Yehudai-Resheff Shlomit; Germain Arnaud; Fei Zhangjun; Jiang Xingshan; Judkins Joshua; Wu Hong; Fernie Alisdair R; Fait Aaron; Stern David B
Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis.
Plant physiology 2009;151(2):905-24.
2009: Zimmer Sarah L; Schein Aleks; Zipor Gadi; Stern David B; Schuster Gadi
Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase.
The Plant journal : for cell and molecular biology 2009;59(1):88-99.
2009: Bollenbach Thomas J; Sharwood Robert E; Gutierrez Ryan; Lerbs-Mache Silva; Stern David B
The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis.
Plant molecular biology 2009;69(5):541-52.
2008: Cahoon A Bruce; Takacs Elizabeth M; Sharpe Richard M; Stern David B
Nuclear, chloroplast, and mitochondrial transcript abundance along a maize leaf developmental gradient.
Plant molecular biology 2008;66(1-2):33-46.
2007: Yehudai-Resheff Shlomit; Zimmer Sara L; Komine Yutaka; Stern David B
Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii.
The Plant cell 2007;19(3):1023-38.
2007: Rymarquis Linda A; Webster Brian R; Stern David B
The nucleus-encoded factor MCD4 participates in degradation of nonfunctional 3' UTR sequences generated by cleavage of pre-mRNA in Chlamydomonas chloroplasts.
Molecular genetics and genomics : MGG 2007;277(3):329-40.
2006: Irihimovitch Vered; Stern David B
The sulfur acclimation SAC3 kinase is required for chloroplast transcriptional repression under sulfur limitation in Chlamydomonas reinhardtii.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(20):7911-6.
2006: Rymarquis Linda A; Higgs David C; Stern David B
Nuclear suppressors define three factors that participate in both 5' and 3' end processing of mRNAs in Chlamydomonas chloroplasts.
The Plant journal : for cell and molecular biology 2006;46(3):448-61.
2006: Bohne Alexandra-V; Irihimovitch Vered; Weihe Andreas; Stern David B
Chlamydomonas reinhardtii encodes a single sigma70-like factor which likely functions in chloroplast transcription.
Current genetics 2006;49(5):333-40.
2006: Cui Liying; Leebens-Mack Jim; Wang Li-San; Tang Jijun; Rymarquis Linda; Stern David B; dePamphilis Claude W
Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach.
BMC evolutionary biology 2006;6():13.
2005: Erickson Brian; Stern David B; Higgs David C
Microarray analysis confirms the specificity of a Chlamydomonas reinhardtii chloroplast RNA stability mutant.
Plant physiology 2005;137(2):534-44.
2005: Rymarquis Linda A; Handley Jocelyn M; Thomas Mabel; Stern David B
Beyond complementation. Map-based cloning in Chlamydomonas reinhardtii.
Plant physiology 2005;137(2):557-66.
2005: Murakami Shinya; Kuehnle Katrin; Stern David B
A spontaneous tRNA suppressor of a mutation in the Chlamydomonas reinhardtii nuclear MCD1 gene required for stability of the chloroplast petD mRNA.
Nucleic acids research 2005;33(10):3372-80.
2005: Bollenbach Thomas J; Lange Heike; Gutierrez Ryan; Erhardt Mathieu; Stern David B; Gagliardi Dominique
RNR1, a 3'-5' exoribonuclease belonging to the RNR superfamily, catalyzes 3' maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.
Nucleic acids research 2005;33(8):2751-63.
2004: Nishimura Yoshiki; Kikis Elise A; Zimmer Sara L; Komine Yutaka; Stern David B
Antisense transcript and RNA processing alterations suppress instability of polyadenylated mRNA in chlamydomonas chloroplasts.
The Plant cell 2004;16(11):2849-69.
2004: Cahoon A Bruce; Harris Faith M; Stern David B
Analysis of developing maize plastids reveals two mRNA stability classes correlating with RNA polymerase type.
EMBO reports 2004;5(8):801-6.
2004: Stern David B; Hanson Maureen R; Barkan Alice
Genetics and genomics of chloroplast biogenesis: maize as a model system.
Trends in plant science 2004;9(6):293-301.
2004: Jiao Henry S; Hicks Amanda; Simpson Clare; Stern David B
Short dispersed repeats in the Chlamydomonas chloroplast genome are collocated with sites for mRNA 3' end formation.
Current genetics 2004;45(5):311-22.
2004: Bollenbach Thomas J; Schuster Gadi; Stern David B
Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover.
Progress in nucleic acid research and molecular biology 2004;78():305-37.
2003: Bollenbach Thomas J; Tatman Dana A; Stern David B
CSP41a, a multifunctional RNA-binding protein, initiates mRNA turnover in tobacco chloroplasts.
The Plant journal : for cell and molecular biology 2003;36(6):842-52.
2003: Cahoon A Bruce; Cunningham Katherine A; Bollenbach Thomas J; Stern David B
Maize BMS cultured cell lines survive with massive plastid gene loss.
Current genetics 2003;44(2):104-13.
2003: Bollenbach Thomas J; Stern David B
Divalent metal-dependent catalysis and cleavage specificity of CSP41, a chloroplast endoribonuclease belonging to the short chain dehydrogenase/reductase superfamily.
Nucleic acids research 2003;31(15):4317-25.
2003: Bollenbach Thomas J; Stern David B
Secondary structures common to chloroplast mRNA 3'-untranslated regions direct cleavage by CSP41, an endoribonuclease belonging to the short chain dehydrogenase/reductase superfamily.
The Journal of biological chemistry 2003;278(28):25832-8.
2003: Esposito Donna; Fey Julien P; Eberhard Stephan; Hicks Amanda J; Stern David B
In vivo evidence for the prokaryotic model of extended codon-anticodon interaction in translation initiation.
The EMBO journal 2003;22(3):651-6.
2003: Cahoon A Bruce; Cunningham Katherine A; Stern David B
The plastid clpP gene may not be essential for plant cell viability.
Plant & cell physiology 2003;44(1):93-5.
2002: Lilly Jason W; Maul Jude E; Stern David B
The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli.
The Plant cell 2002;14(11):2681-706.
2002: Maul Jude E; Lilly Jason W; Cui Liying; dePamphilis Claude W; Miller Webb; Harris Elizabeth H; Stern David B
The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats.
The Plant cell 2002;14(11):2659-79.
2002: Drapier Dominique; Girard-Bascou Jacqueline; Stern David B; Wollman Francis-André
A dominant nuclear mutation in Chlamydomonas identifies a factor controlling chloroplast mRNA stability by acting on the coding region of the atpA transcript.
The Plant journal : for cell and molecular biology 2002;31(6):687-97.
2002: Beardslee Thomas A; Roy-Chowdhury Sanchita; Jaiswal Pankaj; Buhot Laurence; Lerbs-Mache Silva; Stern David B; Allison Lori A
A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts.
The Plant journal : for cell and molecular biology 2002;31(2):199-209.
2002: Simpson Clare L; Stern David B
The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications.
Plant physiology 2002;129(3):957-66.
2002: Hicks Amanda; Drager Robert G; Higgs David C; Stern David B
An mRNA 3' processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts.
The Journal of biological chemistry 2002;277(5):3325-33.
2001: Esposito D; Hicks A J; Stern D B
A role for initiation codon context in chloroplast translation.
The Plant cell 2001;13(10):2373-84.
2001: Swiatek M; Kuras R; Sokolenko A; Higgs D; Olive J; Cinque G; Müller B; Eichacker L A; Stern D B; Bassi R; Herrmann R G; Wollman F A
The chloroplast gene ycf9 encodes a photosystem II (PSII) core subunit, PsbZ, that participates in PSII supramolecular architecture.
The Plant cell 2001;13(6):1347-67.
2001: Esposito D; Higgs D C; Drager R G; Stern D B; Girard-Bascou J
A nucleus-encoded suppressor defines a new factor which can promote petD mRNA stability in the chloroplast of Chlamydomonas reinhardtii.
Current genetics 2001;39(1):40-8.
2000: Monde R A; Greene J C; Stern D B
The sequence and secondary structure of the 3'-UTR affect 3'-end maturation, RNA accumulation, and translation in tobacco chloroplasts.
Plant molecular biology 2000;44(4):529-42.
2000: Monde R A; Schuster G; Stern D B
Processing and degradation of chloroplast mRNA.
Biochimie 2000;82(6-7):573-82.
2000: Monde R A; Greene J C; Stern D B
Disruption of the petB-petD intergenic region in tobacco chloroplasts affects petD RNA accumulation and translation.
Molecular & general genetics : MGG 2000;263(4):610-8.
2000: Komine Y; Kwong L; Anguera M C; Schuster G; Stern D B
Polyadenylation of three classes of chloroplast RNA in Chlamydomonas reinhadtii.
RNA (New York, N.Y.) 2000;6(4):598-607.
2000: Monde R A; Zito F; Olive J; Wollman F A; Stern D B
Post-transcriptional defects in tobacco chloroplast mutants lacking the cytochrome b6/f complex.
The Plant journal : for cell and molecular biology 2000;21(1):61-72.
1999: Levy H; Kindle K L; Stern D B
Target and specificity of a nuclear gene product that participates in mRNA 3'-end formation in Chlamydomonas chloroplasts.
The Journal of biological chemistry 1999;274(50):35955-62.
1999: Higgs D C; Shapiro R S; Kindle K L; Stern D B
Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation.
Molecular and cellular biology 1999;19(12):8479-91.
1999: Drager R G; Higgs D C; Kindle K L; Stern D B
5' to 3' exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways.
The Plant journal : for cell and molecular biology 1999;19(5):521-31.
1999: Lupold D S; Caoile A G; Stern D B
Genomic context influences the activity of maize mitochondrial cox2 promoters.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(20):11670-5.
1999: Lupold D S; Caoile A G; Stern D B
Polyadenylation occurs at multiple sites in maize mitochondrial cox2 mRNA and is independent of editing status.
The Plant cell 1999;11(8):1565-78.
1999: Rott R; Liveanu V; Drager R G; Higgs D; Stern D B; Schuster G
Altering the 3 UTR endonucleolytic cleavage site of a Chlamydomonas chloroplast mRNA affects 3-end maturation in vitro but not in vivo.
Plant molecular biology 1999;40(4):679-86.
1999: Chang C C; Stern D B
DNA-binding factors assemble in a sequence-specific manner on the maize mitochondrial atpA promoter.
Current genetics 1999;35(5):506-11.
1999: Chang C C; Sheen J; Bligny M; Niwa Y; Lerbs-Mache S; Stern D B
Functional analysis of two maize cDNAs encoding T7-like RNA polymerases.
The Plant cell 1999;11(5):911-26.
1999: Lupold D S; Caoile A G; Stern D B
The maize mitochondrial cox2 gene has five promoters in two genomic regions, including a complex promoter consisting of seven overlapping units.
The Journal of biological chemistry 1999;274(6):3897-903.
1998: Rott R; Levy H; Drager R G; Stern D B; Schuster G
3'-Processed mRNA is preferentially translated in Chlamydomonas reinhardtii chloroplasts.
Molecular and cellular biology 1998;18(8):4605-11.
1998: Higgs D C; Kuras R; Kindle K L; Wollman F A; Stern D B
Inversions in the Chlamydomonas chloroplast genome suppress a petD 5' untranslated region deletion by creating functional chimeric mRNAs.
The Plant journal : for cell and molecular biology 1998;14(6):663-71.
1998: Drapier D; Suzuki H; Levy H; Rimbault B; Kindle K L; Stern D B; Wollman F A
The chloroplast atpA gene cluster in Chlamydomonas reinhardtii. Functional analysis of a polycistronic transcription unit.
Plant physiology 1998;117(2):629-41.
1998: Choquet Y; Stern D B; Wostrikoff K; Kuras R; Girard-Bascou J; Wollman F A
Translation of cytochrome f is autoregulated through the 5' untranslated region of petA mRNA in Chlamydomonas chloroplasts.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(8):4380-5.
1998: Drager R G; Girard-Bascou J; Choquet Y; Kindle K L; Stern D B
In vivo evidence for 5'-->3' exoribonuclease degradation of an unstable chloroplast mRNA.
The Plant journal : for cell and molecular biology 1998;13(1):85-96.
1998: Rott R; Liveanu V; Drager R G; Stern D B; Schuster G
The sequence and structure of the 3'-untranslated regions of chloroplast transcripts are important determinants of mRNA accumulation and stability.
Plant molecular biology 1998;36(2):307-14.
1997: Inoue K; Dreyfuss B W; Kindle K L; Stern D B; Merchant S; Sodeinde O A
Ccs1, a nuclear gene required for the post-translational assembly of chloroplast c-type cytochromes.
The Journal of biological chemistry 1997;272(50):31747-54.
1997: Caoile A G; Stern D B
A conserved core element is functionally important for maize mitochondrial promoter activity in vitro.
Nucleic acids research 1997;25(20):4055-60.
1997: Suzuki H; Ingersoll J; Stern D B; Kindle K L
Generation and maintenance of tandemly repeated extrachromosomal plasmid DNA in Chlamydomonas chloroplasts.
The Plant journal : for cell and molecular biology 1997;11(4):635-48.
1997: Chen X; Simpson C L; Kindle K L; Stern D B
A dominant mutation in the Chlamydomonas reinhardtii nuclear gene SIM30 suppresses translational defects caused by initiation codon mutations in chloroplast genes.
Genetics 1997;145(4):935-43.
1996: Rott R; Drager R G; Stern D B; Schuster G
The 3' untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators.
Molecular & general genetics : MGG 1996;252(6):676-83.
1996: Yang J; Schuster G; Stern D B
CSP41, a sequence-specific chloroplast mRNA binding protein, is an endoribonuclease.
The Plant cell 1996;8(8):1409-20.
1996: Drager R G; Zeidler M; Simpson C L; Stern D B
A chloroplast transcript lacking the 3' inverted repeat is degraded by 3'-->5' exoribonuclease activity.
RNA (New York, N.Y.) 1996;2(7):652-63.
1995: Tracy R L; Stern D B
Mitochondrial transcription initiation: promoter structures and RNA polymerases.
Current genetics 1995;28(3):205-16.
1995: Chen X; Kindle K L; Stern D B
The initiation codon determines the efficiency but not the site of translation initiation in Chlamydomonas chloroplasts.
The Plant cell 1995;7(8):1295-305.
1995: Chen Q; Adams C C; Usack L; Yang J; Monde R A; Stern D B
An AU-rich element in the 3' untranslated region of the spinach chloroplast petD gene participates in sequence-specific RNA-protein complex formation.
Molecular and cellular biology 1995;15(4):2010-18.
1995: Yang J; Usack L; Monde R A; Stern D B
The 41 kDa protein component of the spinach chloroplast petD mRNA 3' stem-loop:protein complex is a nuclear encoded chloroplast RNA-binding protein.
Nucleic acids symposium series 1995;(33):237-9.
1994: Sakamoto W; Chen X; Kindle K L; Stern D B
Function of the Chlamydomonas reinhardtii petd 5' untranslated region in regulating the accumulation of subunit IV of the cytochrome b6/f complex.
The Plant journal : for cell and molecular biology 1994;6(4):503-12.
1994: Sakamoto W; Sturm N R; Kindle K L; Stern D B
petD mRNA maturation in Chlamydomonas reinhardtii chloroplasts: role of 5' endonucleolytic processing.
Molecular and cellular biology 1994;14(9):6180-6.
1994: Sturm N R; Kuras R; Büschlen S; Sakamoto W; Kindle K L; Stern D B; Wollman F A
The petD gene is transcribed by functionally redundant promoters in Chlamydomonas reinhardtii chloroplasts.
Molecular and cellular biology 1994;14(9):6171-9.
1993: Rapp W D; Lupold D S; Mack S; Stern D B
Architecture of the maize mitochondrial atp1 promoter as determined by linker-scanning and point mutagenesis.
Molecular and cellular biology 1993;13(12):7232-8.
1993: Stern D B; Kindle K L
3'end maturation of the Chlamydomonas reinhardtii chloroplast atpB mRNA is a two-step process.
Molecular and cellular biology 1993;13(4):2277-85.
1993: Sakamoto W; Kindle K L; Stern D B
In vivo analysis of Chlamydomonas chloroplast petD gene expression using stable transformation of beta-glucuronidase translational fusions.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(2):497-501.
1992: Rapp W D; Stern D B
A conserved 11 nucleotide sequence contains an essential promoter element of the maize mitochondrial atp1 gene.
The EMBO journal 1992;11(3):1065-73.
1991: Chen H C; Stern D B
Specific ribonuclease activities in spinach chloroplasts promote mRNA maturation and degradation.
The Journal of biological chemistry 1991;266(35):24205-11.
1991: Chen H C; Stern D B
Specific binding of chloroplast proteins in vitro to the 3' untranslated region of spinach chloroplast petD mRNA.
Molecular and cellular biology 1991;11(9):4380-8.
1991: Kindle K L; Richards K L; Stern D B
Engineering the chloroplast genome: techniques and capabilities for chloroplast transformation in Chlamydomonas reinhardtii.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(5):1721-5.
1991: Stern D B; Radwanski E R; Kindle K L
A 3' stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo.
The Plant cell 1991;3(3):285-97.
1990: Adams C C; Stern D B
Control of mRNA stability in chloroplasts by 3' inverted repeats: effects of stem and loop mutations on degradation of psbA mRNA in vitro.
Nucleic acids research 1990;18(20):6003-10.

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