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Christian Stoeckert

Research Profile

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Oligonucleotide Array Sequence Analysis

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Gene Expression Profiling

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Mouse

Activities & Behaviors

Genes & Molecular Sequences

Genome, Protozoan

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RNA, Messenger

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Publications

TOP 3
Paul D Kingsley; Jeffrey Malik; Kathleen E McGrath; Timothy Bushnell; Jenna M Frame; Emily Greenfest-Allen; Christian J Stoeckert; James Palis
Ontogeny of erythroid gene expression.
Cristina Aurrecoechea; Ana Barreto; John E Brestelli; Brian P Brunk; Shon Cade; Ryan Doherty; Steve Fischer; Bindu Gajria; Xin Gao; Alan Gingle; Greg Grant; Omar S Harb; Mark Heiges; Sufen Hu; John Iodice; Jessica Kissinger; Eileen Kraemer; Wei Li; Deborah F Pinney; Brian Pitts; David S Roos; Ganesh Srinivasamoorthy; Christian J Stoeckert; Haiming Wang; Susanne Warrenfeltz
EuPathDB: the eukaryotic pathogen database.
Eunyoung Choi; Anne Grapin-Botton; Marine R C Kraus; Laurence A Lemaire; Elisabetta Manduchi; Leah A Potter; Christian J Stoeckert; Sasidhar Vemula; Momoko Yoshimoto; Mark A Magnuson
Dual lineage-specific expression of Sox17 during mouse embryogenesis.

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All Publications

2013: Paul D Kingsley; Jeffrey Malik; Kathleen E McGrath; Timothy Bushnell; Jenna M Frame; Emily Greenfest-Allen; Christian J Stoeckert; James Palis
Ontogeny of erythroid gene expression.
Blood 2013;121(6):e5-e13.
2013: Cristina Aurrecoechea; Ana Barreto; John E Brestelli; Brian P Brunk; Shon Cade; Ryan Doherty; Steve Fischer; Bindu Gajria; Xin Gao; Alan Gingle; Greg Grant; Omar S Harb; Mark Heiges; Sufen Hu; John Iodice; Jessica Kissinger; Eileen Kraemer; Wei Li; Deborah F Pinney; Brian Pitts; David S Roos; Ganesh Srinivasamoorthy; Christian J Stoeckert; Haiming Wang; Susanne Warrenfeltz
EuPathDB: the eukaryotic pathogen database.
Nucleic acids research 2013;41(Database issue):D684-91.
2012: Eunyoung Choi; Anne Grapin-Botton; Marine R C Kraus; Laurence A Lemaire; Elisabetta Manduchi; Leah A Potter; Christian J Stoeckert; Sasidhar Vemula; Momoko Yoshimoto; Mark A Magnuson
Dual lineage-specific expression of Sox17 during mouse embryogenesis.
Stem cells (Dayton, Ohio) 2012;30(10):2297-308.
2012: Priti P Parikh; Anna V Protasio; Matthew Berriman; Mark Carrington; Flora Logan-Klumpler; Christos Louis; Amit P Sheth; Christian J Stoeckert; Pantelis Topalis; Jie Zheng; Satya S Sahoo
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms.
Journal of biomedical semantics 2012;3(1):5.
2011: Gregory R Grant; John B Hogenesch; Nicholas F Lahens; Brian P Brunk; Michael H Farkas; Angel D Pizarro; Jonathan Schug; Christian J Stoeckert; Eric A Pierce
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Bioinformatics (Oxford, England) 2011;27(18):2518-28.
2011: Steve Fischer; Xin Gao; Omar S Harb; John B Iodice; David S Roos; Dhanasekaran Shanmugam; Brian P Brunk; Feng Chen; Christian J Stoeckert
Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2011;Chapter 6():Unit 6.12.1-19.
2011: Mete Civelek; Elisabetta Manduchi; Rebecca J Riley; Christian J Stoeckert; Peter F Davies
Coronary artery endothelial transcriptome in vivo: identification of endoplasmic reticulum stress and enhanced reactive oxygen species by gene connectivity network analysis.
Circulation. Cardiovascular genetics 2011;4(3):243-52.
2011: Steve Fischer; Xin Gao; Omar S Harb; Jessica Kissinger; Eileen T Kraemer; Cary Pennington; David S Roos; Cristina Aurrecoechea; Brian P Brunk; Charles Treatman; Christian J Stoeckert
The Strategies WDK: a graphical search interface and web development kit for functional genomics databases.
Database : the journal of biological databases and curation 2011;2011():bar027.
2011: Stephen A Chervitz; Eric W Deutsch; Dawn Field; Helen Parkinson; John Quackenbush; Phillipe Rocca-Serra; Susanna-Assunta Sansone; Christian J Stoeckert; Chris F Taylor; Ronald Taylor; Catherine A Ball
Data standards for Omics data: the basis of data sharing and reuse.
Methods in molecular biology (Clifton, N.J.) 2011;719():31-69.
2011: Mete Civelek; Elisabetta Manduchi; Gregory R Grant; Christian J Stoeckert; Peter F Davies
Discovery approaches to UPR in athero-susceptible endothelium in vivo.
Methods in enzymology 2011;489():109-26.
2011: Cristina Aurrecoechea; Ana Barreto; John E Brestelli; Brian P Brunk; Elisabet V Caler; Steve Fischer; Bindu Gajria; Xin Gao; Alan Gingle; Greg Grant; Omar S Harb; Mark Heiges; John Iodice; Jessica Kissinger; Eileen Kraemer; Wei Li; Vishal Nayak; Cary Pennington; Deborah F Pinney; Brian Pitts; David S Roos; Ganesh Srinivasamoorthy; Christian J Stoeckert; Charles Treatman; Haiming Wang
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.
Nucleic acids research 2011;39(Database issue):D612-9.
2010: Ravi Shankar; Helen Parkinson; Tony Burdett; Emma Hastings; Junmin Liu; Michael Miller; Rashmi Srinivasa; Joseph White; Alvis Brazma; Gavin Sherlock; Christian J Stoeckert; Catherine A Ball
Annotare--a tool for annotating high-throughput biomedical investigations and resulting data.
Bioinformatics (Oxford, England) 2010;26(19):2470-1.
2010: David J Steger; Gregory R Grant; Michael Schupp; Takuya Tomaru; Martina I Lefterova; Jonathan Schug; Elisabetta Manduchi; Christian J Stoeckert; Mitchell Lazar
Propagation of adipogenic signals through an epigenomic transition state.
Genes & development 2010;24(10):1035-44.
2010: Ryan R Brinkman; Mélanie Courtot; Dirk Derom; Jennifer M Fostel; Yongqun He; Phillip Lord; James Malone; Helen Parkinson; Bjoern Peters; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Larisa N Soldatova; Christian J Stoeckert; Jessica Turner; Jie Zheng
Modeling biomedical experimental processes with OBI.
Journal of biomedical semantics 2010;1 Suppl 1():S7.
2010: Kobby Essien; Christian J Stoeckert
Conservation and divergence of known apicomplexan transcriptional regulons.
BMC genomics 2010;11():147.
2010: Cristina Aurrecoechea; John E Brestelli; Brian P Brunk; Steve Fischer; Bindu Gajria; Xin Gao; Alan Gingle; Greg Grant; Omar S Harb; Mark Heiges; Frank Innamorato; John Iodice; Jessica Kissinger; Eileen Kraemer; Wei Li; John A Miller; Vishal Nayak; Cary Pennington; Deborah F Pinney; David S Roos; Chris Ross; Ganesh Srinivasamoorthy; Christian J Stoeckert; Ryan Thibodeau; Charles Treatman; Haiming Wang
EuPathDB: a portal to eukaryotic pathogen databases.
Nucleic acids research 2010;38(Database issue):D415-9.
2010: Mete Civelek; Gregory R Grant; Chrysta R Irolla; Congzhu Shi; Rebecca J Riley; Oscar A Chiesa; Christian J Stoeckert; John W Karanian; William F Pritchard; Peter F Davies
Prelesional arterial endothelial phenotypes in hypercholesterolemia: universal ABCA1 upregulation contrasts with region-specific gene expression in vivo.
American journal of physiology. Heart and circulatory physiology 2010;298(1):H163-70.
2009: Zvi Granot; Avital Swisa; Judith Magenheim; Miri Stolovich-Rain; Wakako Fujimoto; Elisabetta Manduchi; Takashi Miki; Jochen K Lennerz; Christian J Stoeckert; Oded Meyuhas; Susumu Seino; M Alan Permutt; Helen Piwnica-Worms; Nabeel Bardeesy; Yuval Dor
LKB1 regulates pancreatic beta cell size, polarity, and function.
Cell metabolism 2009;10(4):296-308.
2009: Mete Civelek; Elisabetta Manduchi; Rebecca J Riley; Christian J Stoeckert; Peter F Davies
Chronic endoplasmic reticulum stress activates unfolded protein response in arterial endothelium in regions of susceptibility to atherosclerosis.
Circulation research 2009;105(5):453-61.
2009: Wenjun Ju; Felix Eichinger; Markus Bitzer; Jun Oh; Shannon McWeeney; Celine C Berthier; Kerby Shedden; Clemens D Cohen; Anna Henger; Stefanie Krick; Jeffrey B Kopp; Christian J Stoeckert; Steven Dikman; Bernd Schroppel; David B Thomas; Detlef Schlondorff; Matthias Kretzler; Erwin P Böttinger
Renal gene and protein expression signatures for prediction of kidney disease progression.
The American journal of pathology 2009;174(6):2073-85.
2009: Ghislain Bidaut; Christian J Stoeckert
Large scale transcriptome data integration across multiple tissues to decipher stem cell signatures.
Methods in enzymology 2009;467():229-45.
2009: G Bidaut; Christian J Stoeckert
Characterization of unknown adult stem cell samples by large scale data integration and artificial neural networks.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2009;():356-67.
2008: Scott A Ochsner; David L Steffen; Christian J Stoeckert; Neil J McKenna
Much room for improvement in deposition rates of expression microarray datasets.
Nature methods 2008;5(12):991.
2008: Martina I Lefterova; Yong Zhang; David J Steger; Michael Schupp; Jonathan Schug; Ana Cristancho; Dan Feng; David Zhuo; Christian J Stoeckert; X Shirley Liu; Mitchell Lazar
PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale.
Genes & development 2008;22(21):2941-52.
2008: Kobby Essien; Sridhar Hannenhalli; Christian J Stoeckert
Computational analysis of constraints on noncoding regions, coding regions and gene expression in relation to Plasmodium phenotypic diversity.
PloS one 2008;3(9):e3122.
2008: Bin Yan; Guang Chen; Kunal Saigal; Xinping Yang; Shane T Jensen; Carter Van Waes; Christian J Stoeckert; Zhong Chen
Systems biology-defined NF-kappaB regulons, interacting signal pathways and networks are implicated in the malignant phenotype of head and neck cancer cell lines differing in p53 status.
Genome biology 2008;9(3):R53.
2008: Bindu Gajria; Amit Bahl; John E Brestelli; Jennifer Dommer; Steve Fischer; Xin Gao; Mark Heiges; John Iodice; Jessica Kissinger; Aaron J Mackey; Deborah F Pinney; David S Roos; Christian J Stoeckert; Haiming Wang; Brian P Brunk
ToxoDB: an integrated Toxoplasma gondii database resource.
Nucleic acids research 2008;36(Database issue):D553-6.
2007: Andrew R Jones; Michael Miller; Ruedi Aebersold; Rolf Apweiler; Catherine A Ball; Alvis Brazma; James Degreef; Nigel Hardy; Henning Hermjakob; Simon Hubbard; Peter Hussey; Mark Igra; Helen Jenkins; Randall K Julian; Kent Laursen; Stephen G Oliver; Norman W Paton; Susanna-Assunta Sansone; Ugis Sarkans; Christian J Stoeckert; Christopher Taylor; Patricia L Whetzel; Joseph A White; Paul Spellman; Angel Pizarro
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Nature biotechnology 2007;25(10):1127-33.
2007: Mitchell Guttman; Carolyn Mies; Katarzyna Dudycz-Sulicz; Sharon J Diskin; Don A Baldwin; Christian J Stoeckert; Gregory R Grant
Assessing the significance of conserved genomic aberrations using high resolution genomic microarrays.
PLoS genetics 2007;3(8):e143.
2007: Rana K Gupta; Nan Gao; Regina K Gorski; Peter White; Olga T Hardy; Kiran Rafiq; John E Brestelli; Guang Chen; Christian J Stoeckert; Klaus kaestner
Expansion of adult beta-cell mass in response to increased metabolic demand is dependent on HNF-4alpha.
Genes & development 2007;21(7):756-69.
2007: Olga T Hardy; Hans E Hohmeier; Thomas C Becker; Elisabetta Manduchi; Nicolai M Doliba; Rana K Gupta; Peter White; Christian J Stoeckert; Franz M Matschinsky; Christopher B Newgard; Klaus kaestner
Functional genomics of the beta-cell: short-chain 3-hydroxyacyl-coenzyme A dehydrogenase regulates insulin secretion independent of K+ currents.
Molecular endocrinology (Baltimore, Md.) 2007;21(3):765-73.
2007: Gregory R Grant; Elisabetta Manduchi; Christian J Stoeckert
Analysis and management of microarray gene expression data.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2007;Chapter 19():Unit 19.6.
2007: Guang Chen; Shane T Jensen; Christian J Stoeckert
Clustering of genes into regulons using integrated modeling-COGRIM.
Genome biology 2007;8(1):R4.
2007: Cristina Aurrecoechea; Mark Heiges; Haiming Wang; Zhiming Wang; Steve Fischer; Philippa Rhodes; John Miller; Eileen Kraemer; Christian J Stoeckert; David S Roos; Jessica Kissinger
ApiDB: integrated resources for the apicomplexan bioinformatics resource center.
Nucleic acids research 2007;35(Database issue):D427-30.
2007: Joan Mazzarelli; John E Brestelli; Regina K Gorski; Junmin Liu; Elisabetta Manduchi; Deborah F Pinney; Jonathan Schug; Peter White; Klaus kaestner; Christian J Stoeckert
EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.
Nucleic acids research 2007;35(Database issue):D751-5.
2006: Christian J Stoeckert; Steve Fischer; Jessica Kissinger; Mark Heiges; Cristina Aurrecoechea; Bindu Gajria; David S Roos
PlasmoDB v5: new looks, new genomes.
Trends in parasitology 2006;22(12):543-6.
2006: Joan Mazzarelli; Peter White; Regina K Gorski; John E Brestelli; Deborah F Pinney; Athanasios Arsenlis; Alexey Katokhin; Olga Belova; Vera Bogdanova; Eugenij Elisafenko; Marina Gubina; Lilia Nizolenko; Polina Perelman; Mikhail Puzakov; Alexandre Shilov; Vladimir Trifonoff; Nadezhda Vorobjeva; Nikolay A Kolchanov; Klaus kaestner; Christian J Stoeckert
Novel genes identified by manual annotation and microarray expression analysis in the pancreas.
Genomics 2006;88(6):752-61.
2006: Sharon J Diskin; Tom Eck; Joel Greshock; Yael Mosse; Tara L Naylor; Christian J Stoeckert; Barbara L Weber; John M Maris; Gregory R Grant
STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments.
Genome research 2006;16(9):1149-58.
2006: Shailesh V Date; Christian J Stoeckert
Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale.
Genome research 2006;16(4):542-9.
2006: Patricia L Whetzel; Helen Parkinson; Helen C Causton; Liju Fan; Jennifer Fostel; Gilberto Fragoso; Laurence Game; Mervi Heiskanen; Norman Morrison; Philippe Rocca-Serra; Susanna-Assunta Sansone; Chris Taylor; Joseph White; Christian J Stoeckert
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Bioinformatics (Oxford, England) 2006;22(7):866-73.
2006: John Quackenbush; Christian J Stoeckert; Catherine Ball; Alvis Brazma; Robert Gentleman; Wolfgang Huber; Rafael A Irizarry; Marc Salit; Gavin Sherlock; Paul Spellman; Neil Winegarden
Top-down standards will not serve systems biology.
Nature 2006;440(7080):24.
2006: Qiang Sun; Guang Chen; Jeffrey W Streb; Xiaochun Long; Yumei Yang; Christian J Stoeckert; Joseph M Miano
Defining the mammalian CArGome.
Genome research 2006;16(2):197-207.
2006: Tim Rayner; Philippe Rocca-Serra; Paul Spellman; Helen C Causton; Anna Farne; Ele Holloway; Rafael A Irizarry; Junmin Liu; Donald S Maier; Michael Miller; Kjell Petersen; John Quackenbush; Gavin Sherlock; Christian J Stoeckert; Joseph White; Patricia L Whetzel; Farrell Wymore; Helen Parkinson; Ugis Sarkans; Catherine A Ball; Alvis Brazma
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
BMC bioinformatics 2006;7():489.
2006: Patricia L Whetzel; Helen Parkinson; Christian J Stoeckert
Using ontologies to annotate microarray experiments.
Methods in enzymology 2006;411():325-39.
2006: Patricia L Whetzel; Ryan R Brinkman; Helen C Causton; Liju Fan; Dawn Field; Jennifer Fostel; Gilberto Fragoso; Tanya Gray; Mervi Heiskanen; Tina Hernandez-Boussard; Norman Morrison; Helen Parkinson; Philippe Rocca-Serra; Susanna-Assunta Sansone; Daniel Schober; Barry Smith; Robert Stevens; Christian J Stoeckert; Chris Taylor; Joe White; Andrew Wood
Development of FuGO: an ontology for functional genomics investigations.
Omics : a journal of integrative biology 2006;10(2):199-204.
2006: Christian J Stoeckert; Catherine Ball; Alvis Brazma; Ryan Brinkman; Helen C Causton; Liju Fan; Jennifer Fostel; Gilberto Fragoso; Mervi Heiskanen; Frank C P Holstege; Norman Morrison; Helen Parkinson; John Quackenbush; Philippe Rocca-Serra; Susanna-Assunta Sansone; Ugis Sarkans; Gavin Sherlock; Robert Stevens; Chris Taylor; Ronald Taylor; Patricia L Whetzel; Joseph White
Wrestling with SUMO and bio-ontologies.
Nature biotechnology 2006;24(1):21-2; author reply 23.
2006: Feng Chen; Aaron J Mackey; Christian J Stoeckert; David S Roos
OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.
Nucleic acids research 2006;34(Database issue):D363-8.
2006: Manoj T Duraisingh; Michael T Ferdig; Christian J Stoeckert; Sarah K Volkman; Victoria McGovern
Plasmodium research in the postgenomic era.
Trends in parasitology 2006;22(1):1-4.
2005: Christian J Stoeckert
Functional genomics databases on the web.
Cellular microbiology 2005;7(8):1053-9.
2005: Anthony G Passerini; Congzhu Shi; Nadeene M Francesco; Peiying Chuan; Elisabetta Manduchi; Gregory R Grant; Christian J Stoeckert; John W Karanian; Diane Wray-Cahen; William F Pritchard; Peter F Davies
Regional determinants of arterial endothelial phenotype dominate the impact of gender or short-term exposure to a high-fat diet.
Biochemical and biophysical research communications 2005;332(1):142-8.
2005: Gregory R Grant; Junmin Liu; Christian J Stoeckert
A practical false discovery rate approach to identifying patterns of differential expression in microarray data.
Bioinformatics (Oxford, England) 2005;21(11):2684-90.
2005: Jonathan Schug; Winfried-Paul Schuller; Claudia Kappen; J Michael Salbaum; Maja Bucan; Christian J Stoeckert
Promoter features related to tissue specificity as measured by Shannon entropy.
Genome biology 2005;6(4):R33.
2004: Catherine Ball; Alvis Brazma; Helen C Causton; Steve Chervitz; Ron Edgar; Pascal Hingamp; John Matese; Carl Icahn; Helen Parkinson; John Quackenbush; Martin Ringwald; Susanna-Assunta Sansone; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; Yoshio Tateno; Ronald Taylor; Joseph White; Neil Winegarden
An open letter on microarray data from the MGED Society.
Microbiology (Reading, England) 2004;150(Pt 11):3522-4.
2004: Catherine A Ball; Alvis Brazma; Helen C Causton; Steve Chervitz; Ron Edgar; Pascal Hingamp; John Matese; Helen Parkinson; John Quackenbush; Martin Ringwald; Susanna-Assunta Sansone; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; Yoshio Tateno; Ronald Taylor; Joseph White; Neil Winegarden
Submission of microarray data to public repositories.
PLoS biology 2004;2(9):E317.
2004: Catherine Ball; Alvis Brazma; Helen C Causton; Steve Chervitz; Ron Edgar; Pascal Hingamp; John Matese; Helen Parkinson; John Quackenbush; Martin Ringwald; Susanna-Assunta Sansone; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; Yoshio Tateno; Ronald Taylor; Joseph White; Neil Winegarden
Standards for microarray data: an open letter.
Environmental health perspectives 2004;112(12):A666-7.
2004: Andrew Jones; Ela Hunt; Jonathan Wastling; Angel Pizarro; Christian J Stoeckert
An object model and database for functional genomics.
Bioinformatics (Oxford, England) 2004;20(10):1583-90.
2004: Paolo G Marciano; Julia Brettschneider; Elisabetta Manduchi; Jason E Davis; Scott Eastman; Ramesh Raghupathi; Kathryn E Saatman; Terence P Speed; Christian J Stoeckert; james eberwine; Tracy K McIntosh
Neuron-specific mRNA complexity responses during hippocampal apoptosis after traumatic brain injury.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(12):2866-76.
2004: Elisabetta Manduchi; Gregory R Grant; H He; Junmin Liu; Matthew D Mailman; Angel Pizarro; Patricia L Whetzel; Christian J Stoeckert
RAD and the RAD Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies.
Bioinformatics (Oxford, England) 2004;20(4):452-9.
2004: Anthony G Passerini; Denise C Polacek; Congzhu Shi; Nadeene M Francesco; Elisabetta Manduchi; Gregory R Grant; William F Pritchard; Steven Powell; Gary Y Chang; Christian J Stoeckert; Peter F Davies
Coexisting proinflammatory and antioxidative endothelial transcription profiles in a disturbed flow region of the adult porcine aorta.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(8):2482-7.
2004: Helen Parkinson; Stuart Aitken; Richard A Baldock; Jonathan B L Bard; Albert Burger; Terry Hayamizu; Alan Rector; Martin Ringwald; Jeremy Rogers; Cornelius Rosse; Christian J Stoeckert; Duncan Davidson
The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data.
Comparative and functional genomics 2004;5(6-7):521-7.
2004: Li Li; Jonathan Crabtree; Steve Fischer; Deborah F Pinney; Christian J Stoeckert; L David Sibley; David S Roos
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.
Nucleic acids research 2004;32(Database issue):D326-8.
2003: Gregory R Grant; Elisabetta Manduchi; Angel Pizarro; Christian J Stoeckert
Maintaining data integrity in microarray data management.
Biotechnology and bioengineering 2003;84(7):795-800.
2003: Li Li; Christian J Stoeckert; David S Roos
OrthoMCL: identification of ortholog groups for eukaryotic genomes.
Genome research 2003;13(9):2178-89.
2003: Klaus kaestner; Catherine S Lee; L Marie Scearce; John E Brestelli; Athanasios Arsenlis; Phillip Phuc Le; Kristen A Lantz; Jonathan Crabtree; Angel Pizarro; Joan Mazzarelli; Deborah F Pinney; Steve Fischer; Elisabetta Manduchi; Christian J Stoeckert; Gérard Gradwohl; Sandra W Clifton; Juliana R Brown; Hiroshi Inoue; Corentin Cras-Méneur; M Alan Permutt
Transcriptional program of the endocrine pancreas in mice and humans.
Diabetes 2003;52(7):1604-10.
2003: Denise C Polacek; Anthony G Passerini; Congzhu Shi; Nadeene M Francesco; Elisabetta Manduchi; Gregory R Grant; Steven Powell; Helen Bischof; Hans Winkler; Christian J Stoeckert; Peter F Davies
Fidelity and enhanced sensitivity of differential transcription profiles following linear amplification of nanogram amounts of endothelial mRNA.
Physiological genomics 2003;13(2):147-56.
2003: Li Li; Brian P Brunk; Jessica Kissinger; Deana Pape; Keliang Tang; Robert H Cole; John Martin; Todd Wylie; Mike Dante; Steven J Fogarty; Daniel K Howe; Paul A Liberator; Carmen Diaz; Jennifer Anderson; Michael White; Maria E Jerome; Emily A Johnson; Jay A Radke; Christian J Stoeckert; Robert H Waterston; Sandra W Clifton; David S Roos; L David Sibley
Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database.
Genome research 2003;13(3):443-54.
2003: Christian J Stoeckert; Helen Parkinson
The MGED ontology: a framework for describing functional genomics experiments.
Comparative and functional genomics 2003;4(1):127-32.
2003: Christian J Stoeckert
Common objects: think global, act local.
Omics : a journal of integrative biology 2003;7(1):103-4.
2003: Yunxia Zhu; Benjamin L King; Babak Parvizi; Brian P Brunk; Christian J Stoeckert; John Quackenbush; Joel Richardson; Carol Bult
Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database.
Genome biology 2003;4(2):R16.
2003: Amit Bahl; Brian P Brunk; Jonathan Crabtree; Martin J Fraunholz; Bindu Gajria; Gregory R Grant; Hagai Ginsburg; Dinesh Gupta; Jessica Kissinger; Philip Labo; Li Li; Matthew D Mailman; Arthur J Milgram; David S Pearson; David S Roos; Jonathan Schug; Christian J Stoeckert; Patricia L Whetzel
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic acids research 2003;31(1):212-5.
2002: Christian J Stoeckert; Helen C Causton; Catherine A Ball
Microarray databases: standards and ontologies.
Nature genetics 2002;32 Suppl():469-73.
2002: Catherine A Ball; Gavin Sherlock; Helen Parkinson; Philippe Rocca-Sera; Catherine Brooksbank; Helen C Causton; Duccio Cavalieri; Terry Gaasterland; Pascal Hingamp; Frank C P Holstege; Martin Ringwald; Paul Spellman; Christian J Stoeckert; Jason E Stewart; Ronald Taylor; Alvis Brazma; John Quackenbush
The underlying principles of scientific publication.
Bioinformatics (Oxford, England) 2002;18(11):1409.
2002: Catherine A Ball; Gavin Sherlock; Helen Parkinson; Philippe Rocca-Sera; Catherine Brooksbank; Helen C Causton; Duccio Cavalieri; Terry Gaasterland; Pascal Hingamp; Frank C P Holstege; Martin Ringwald; Paul Spellman; Christian J Stoeckert; Jason E Stewart; Ronald Taylor; Alvis Brazma; John Quackenbush
Standards for microarray data.
Science (New York, N.Y.) 2002;298(5593):539.
2002: Jessica Kissinger; Brian P Brunk; Jonathan Crabtree; Martin J Fraunholz; Bindu Gajria; Arthur J Milgram; David S Pearson; Jonathan Schug; Amit Bahl; Sharon J Diskin; Hagai Ginsburg; Gregory R Grant; Dinesh Gupta; Philip Labo; Li Li; Matthew D Mailman; Shannon McWeeney; Patricia L Whetzel; Christian J Stoeckert; David S Roos
The Plasmodium genome database.
Nature 2002;419(6906):490-2.
2002: Jason A Hackney; Pierre Charbord; Brian P Brunk; Christian J Stoeckert; Ihor R Lemischka; Kateri A Moore
A molecular profile of a hematopoietic stem cell niche.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(20):13061-6.
2002: Elisabetta Manduchi; L Marie Scearce; John E Brestelli; Gregory R Grant; Klaus kaestner; Christian J Stoeckert
Comparison of different labeling methods for two-channel high-density microarray experiments.
Physiological genomics 2002;10(3):169-79.
2002: Paul Spellman; Michael Miller; Jason Stewart; Charles Troup; Ugis Sarkans; Steve Chervitz; Derek Bernhart; Gavin Sherlock; Catherine Ball; Marc Lepage; Marcin Swiatek; W L Marks; Jason Goncalves; Scott Markel; Daniel Iordan; Mohammadreza Shojatalab; Angel Pizarro; Joe White; Robert Hubley; Eric Deutsch; Martin Senger; Bruce Aronow; Alan Robinson; Doug Bassett; Christian J Stoeckert; Alvis Brazma
Design and implementation of microarray gene expression markup language (MAGE-ML).
Genome biology 2002;3(9):RESEARCH0046.
2002: L Marie Scearce; John E Brestelli; Shannon McWeeney; Catherine S Lee; Joan Mazzarelli; Deborah F Pinney; Angel Pizarro; Christian J Stoeckert; Sandra W Clifton; M Alan Permutt; Juliana Brown; Douglas A Melton; Klaus kaestner
Functional genomics of the endocrine pancreas: the pancreas clone set and PancChip, new resources for diabetes research.
Diabetes 2002;51(7):1997-2004.
2002: Jonathan Schug; Sharon J Diskin; Joan Mazzarelli; Brian P Brunk; Christian J Stoeckert
Predicting gene ontology functions from ProDom and CDD protein domains.
Genome research 2002;12(4):648-55.
2002: Amit Bahl; Brian P Brunk; Ross Coppel; Jonathan Crabtree; Sharon J Diskin; Martin J Fraunholz; Gregory R Grant; Dinesh Gupta; Robert L Huestis; Jessica Kissinger; Philip Labo; Li Li; Shannon McWeeney; Arthur J Milgram; David S Roos; Jonathan Schug; Christian J Stoeckert
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic acids research 2002;30(1):87-90.
2001: Alvis Brazma; Pascal Hingamp; John Quackenbush; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; J Aach; W Ansorge; Catherine A Ball; Helen C Causton; Terry Gaasterland; P Glenisson; Frank C P Holstege; I F Kim; V Markowitz; John Matese; Helen Parkinson; Alan Robinson; Ugis Sarkans; S Schulze-Kremer; J Stewart; R Taylor; Jaak Vilo; Martin Vingron
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Nature genetics 2001;29(4):365-71.
2001: Jonathan Crabtree; Timothy Wiltshire; Brian P Brunk; Shaying Zhao; Jonathan Schug; Christian J Stoeckert; Maja Bucan
High-resolution BAC-based map of the central portion of mouse chromosome 5.
Genome research 2001;11(10):1746-57.
2001: Christian J Stoeckert; Angel Pizarro; Elisabetta Manduchi; M Gibson; Brian P Brunk; Jonathan Crabtree; Jonathan Schug; shai Shen-Orr; GC Overton
A relational schema for both array-based and SAGE gene expression experiments.
Bioinformatics (Oxford, England) 2001;17(4):300-8.
2000: Elisabetta Manduchi; Gregory R Grant; Steven E McKenzie; GC Overton; Saul Surrey; Christian J Stoeckert
Generation of patterns from gene expression data by assigning confidence to differentially expressed genes.
Bioinformatics (Oxford, England) 2000;16(8):685-98.
1999: H Ni; X D Yang; Christian J Stoeckert
Maturation and developmental stage-related changes in fetal globin gene expression are reproduced in transiently transfected primary adult human erythroblasts.
Experimental hematology 1999;27(1):46-53.
1999: Christian J Stoeckert; F Salas; Brian P Brunk; GC Overton
EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis.
Nucleic acids research 1999;27(1):200-3.
1998: F Salas; J Haas; Brian P Brunk; Christian J Stoeckert; GC Overton
EpoDB: a database of genes expressed during vertebrate erythropoiesis.
Nucleic acids research 1998;26(1):288-9.
1997: HENRY LAU; Christian J Stoeckert
FasL--too much of a good thing? Transplanted grafts of pancreatic islet cells engineered to express Fas ligand are destroyed not protected by the immune system.
Nature medicine 1997;3(7):727-8.
1996: P K Chowrashi; S M Pemrick; S Li; P Yi; T Clarke; B Maguire; G Ader; P Saintigny; B Mittal; M Tewari; Christian J Stoeckert; H H Stedman; J E Sylvester; F A Pepe
The myosin filament XV assembly: contributions of 195 residue segments of the myosin rod and the eight C-terminal residues.
Journal of muscle research and cell motility 1996;17(5):555-73.
1996: HENRY LAU; M Yu; A Fontana; Christian J Stoeckert
Prevention of islet allograft rejection with engineered myoblasts expressing FasL in mice.
Science (New York, N.Y.) 1996;273(5271):109-12.
1996: Christian J Stoeckert; H Cheng
Partial repression of human gamma-globin genes by LCR element HS3 when linked to beta-globin genes and LCR element HS2 in MEL cells.
American journal of hematology 1996;51(3):220-8.
1995: A A Chahine; Christian J Stoeckert; HENRY LAU
Local immunomodulation to promote co-stimulatory blockade.
Clinical transplantation 1995;9(3 Pt 2):215-8.
1995: A A Chahine; M Yu; M M McKernan; Christian J Stoeckert; HENRY LAU
Immunomodulation of pancreatic islet allografts in mice with CTLA4Ig secreting muscle cells.
Transplantation 1995;59(9):1313-8.
1994: A A Chahine; M Yu; M McKernan; Christian J Stoeckert; Peter Linsley; HENRY LAU
Local CTLA4Ig synergizes with one-dose anti-LFA-1 to achieve long-term acceptance of pancreatic islet allografts.
Transplantation proceedings 1994;26(6):3296.
1994: T B West; Kwaku Ohene-Frempong; Christian J Stoeckert; Saul Surrey
Erythroid progenitors in the peripheral blood of children with sickle cell disease.
The American journal of pediatric hematology/oncology 1994;16(2):116-9.
1994: Christian J Stoeckert; M B Green
Erythropoietin and hydroxyurea can act on early erythroid progenitors from adult human peripheral blood to modulate fetal globin mRNA levels.
Experimental hematology 1994;22(3):278-82.
1991: T Schultheiss; ZX Lin; H Ishikawa; I Zamir; Christian J Stoeckert; H Holtzer
Desmin/vimentin intermediate filaments are dispensable for many aspects of myogenesis.
The Journal of cell biology 1991;114(5):953-66.
1991: Christian J Stoeckert
Retroviral transfer of a human fetal globin gene carrying the -202 G gamma beta (+)-HPFH mutation into the human erythroleukemia line, KMOE.
Hemoglobin 1991;15(4):257-68.
1990: Christian J Stoeckert; N C Nicolaides; K M Haines; Saul Surrey; E Bayever
Retroviral transfer of genes into erythroid progenitors derived from human peripheral blood.
Experimental hematology 1990;18(11):1164-70.
1990: N C Nicolaides; Christian J Stoeckert
A simple, efficient method for the separate isolation of RNA and DNA from the same cells.
BioTechniques 1990;8(2):154-6.
1989: Christian J Stoeckert; N C Nicolaides; K M Haines
Cytosine arabinoside plus hemin treatment of a human erythroid cell line, KMOE, strongly induces embryonic, fetal, and adult beta-like globin genes.
Hemoglobin 1989;13(6):605-17.