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Matthew Stone

Research Profile

Occupations

Proteomics

Concepts & Ideas

Databases, Protein

Procedures

Anatomy

Saliva

Chemicals & Drugs

Co-author Network

Publications

TOP 3
Pratik Jagtap; Thomas McGowan; Rongxiao Sa; Sean L Seymour; Matthew D Stone; Edgar A Arriaga; Sricharan Bandhakavi; John Chilton; LeeAnn Higgins; Timothy J Griffin
Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.
Johanna R Reed; Yungil Ryu; Thomas C Beadnell; Timothy J Griffin; Matthew D Stone; Kathryn L Schwertfeger
Fibroblast growth factor receptor 1 activation in mammary tumor cells promotes macrophage recruitment in a CX3CL1-dependent manner.
Matthew D Stone; X Chen; Thomas McGowan; Sricharan Bandhakavi; Bin Cheng; Nelson L Rhodus; Timothy J Griffin
Large-scale phosphoproteomics analysis of whole saliva reveals a distinct phosphorylation pattern.

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All Publications

2012: Pratik Jagtap; Thomas McGowan; Rongxiao Sa; Sean L Seymour; Matthew D Stone; Edgar A Arriaga; Sricharan Bandhakavi; John Chilton; LeeAnn Higgins; Timothy J Griffin
Workflow for analysis of high mass accuracy salivary data set using MaxQuant and ProteinPilot search algorithm.
Proteomics 2012;12(11):1726-30.
2012: Johanna R Reed; Yungil Ryu; Thomas C Beadnell; Timothy J Griffin; Matthew D Stone; Kathryn L Schwertfeger
Fibroblast growth factor receptor 1 activation in mammary tumor cells promotes macrophage recruitment in a CX3CL1-dependent manner.
PloS one 2012;7(9):e45877.
2011: Matthew D Stone; X Chen; Thomas McGowan; Sricharan Bandhakavi; Bin Cheng; Nelson L Rhodus; Timothy J Griffin
Large-scale phosphoproteomics analysis of whole saliva reveals a distinct phosphorylation pattern.
Journal of proteome research 2011;10(4):1728-36.
2011: Sricharan Bandhakavi; Susan K Van Riper; Pierre N Tawfik; Matthew D Stone; Tufia Haddad; Nelson L Rhodus; John V Carlis; Timothy J Griffin
Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.
Journal of proteome research 2011;10(3):1052-61.
2010: Getiria Onsongo; Matthew D Stone; Susan K Van Riper; John Chilton; Baolin Wu; LeeAnn Higgins; Troy Lund; John V Carlis; Timothy J Griffin
LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments.
Proteomics 2010;10(19):3533-8.
2010: Ebbing P de Jong; Hongwei Xie; Getiria Onsongo; Matthew D Stone; Xiao-Bing Chen; Joel A Kooren; Eric W Refsland; Robert J Griffin; Frank G Ondrey; Baolin Wu; Chap T Le; Nelson L Rhodus; John V Carlis; Timothy J Griffin
Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions.
PloS one 2010;5(6):e11148.
2009: Sricharan Bandhakavi; Matthew D Stone; Getiria Onsongo; Susan K Van Riper; Timothy J Griffin
A dynamic range compression and three-dimensional peptide fractionation analysis platform expands proteome coverage and the diagnostic potential of whole saliva.
Journal of proteome research 2009;8(12):5590-600.
2009: Yan Zhang; William S Oetting; Stephen B Harvey; Matthew D Stone; Teresa Monkkonen; Arthur J Matas; Fernando G Cosio; Gary L Nelsestuen
Urinary Peptide patterns in native kidneys and kidney allografts.
Transplantation 2009;87(12):1807-13.
2005: Matthew D Stone; Stephen B Harvey; Michael B Martinez; Ronald R Bach; Gary L Nelsestuen
Large enhancement of functional activity of active site-inhibited factor VIIa due to protein dimerization: insights into mechanism of assembly/disassembly from tissue factor.
Biochemistry 2005;44(16):6321-30.
2005: Matthew D Stone; Gary L Nelsestuen
Efficacy of soluble phospholipids in the prothrombinase reaction.
Biochemistry 2005;44(10):4037-41.
2003: Stephen B Harvey; Matthew D Stone; Michael B Martinez; Gary L Nelsestuen
Mutagenesis of the gamma-carboxyglutamic acid domain of human factor VII to generate maximum enhancement of the membrane contact site.
The Journal of biological chemistry 2003;278(10):8363-9.