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Milton Stubbs

Research Profile

Procedures

X Ray Crystallography

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Chemicals & Drugs

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Andreas Funkner; Natalya Gyrych; Hauke Lilie; Christoph Parthier; Mike Schutkowski; Milton T Stubbs; Johnny Zerweck; Gunter Fischer; David M Ferrari
Peptide binding by catalytic domains of the protein disulfide isomerase-related protein ERp46.
Birgit Koch; Petr Kolenko; Christoph Parthier; Jens-Ulrich Rahfeld; Gunter Reuter; Stephan Schilling; Milton T Stubbs; Michael Wermann; David Ruiz Carrillo; Mirko Buchholz; Hans-Ulrich Demuth
Crystal structures of glutaminyl cyclases (QCs) from Drosophila melanogaster reveal active site conservation between insect and mammalian QCs.
Isabel Morgado; Christoph Parthier; Klaus G Reymann; Raik Rönicke; Cordelia Schiene-Fischer; Milton T Stubbs; Jessica Wacker; Karin Wieligmann; Miroslav Malesevic; Karthikeyan Annamalai; Jochen Balbach; Monika Baumann; Magdalena Bereza; Matthias Görlach; Uwe Horn; Peter Hortschansky; Christian Mawrin; Katrin Meinhardt; Marcus Fändrich
Molecular basis of β-amyloid oligomer recognition with a conformational antibody fragment.

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All Publications

2013: Andreas Funkner; Natalya Gyrych; Hauke Lilie; Christoph Parthier; Mike Schutkowski; Milton T Stubbs; Johnny Zerweck; Gunter Fischer; David M Ferrari
Peptide binding by catalytic domains of the protein disulfide isomerase-related protein ERp46.
Journal of molecular biology 2013;425(8):1340-62.
2012: Birgit Koch; Petr Kolenko; Christoph Parthier; Jens-Ulrich Rahfeld; Gunter Reuter; Stephan Schilling; Milton T Stubbs; Michael Wermann; David Ruiz Carrillo; Mirko Buchholz; Hans-Ulrich Demuth
Crystal structures of glutaminyl cyclases (QCs) from Drosophila melanogaster reveal active site conservation between insect and mammalian QCs.
Biochemistry 2012;51(37):7383-92.
2012: Isabel Morgado; Christoph Parthier; Klaus G Reymann; Raik Rönicke; Cordelia Schiene-Fischer; Milton T Stubbs; Jessica Wacker; Karin Wieligmann; Miroslav Malesevic; Karthikeyan Annamalai; Jochen Balbach; Monika Baumann; Magdalena Bereza; Matthias Görlach; Uwe Horn; Peter Hortschansky; Christian Mawrin; Katrin Meinhardt; Marcus Fändrich
Molecular basis of β-amyloid oligomer recognition with a conformational antibody fragment.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(31):12503-8.
2012: Christoph Parthier; Dierk Scheel; Udo F Wehmeier; Christoph Böttcher; Ulrike Bräuer; Constanze Breithaupt; Diana Clausnitzer; Uwe Fandrich; Stefan Görlich; Frank Jaenecke; Milton T Stubbs
The O-carbamoyltransferase TobZ catalyzes an ancient enzymatic reaction.
Angewandte Chemie (International ed. in English) 2012;51(17):4046-52.
2012: Sabrina Pfennig; Milton T Stubbs
Flexing and stretching in nonribosomal Peptide synthetases.
Chemistry & biology 2012;19(2):167-9.
2011: David Ruiz-Carrillo; Stephan Schilling; Milton T Stubbs; Michael Wermann; Ulrich Heiser; Birgit Koch; Hans-Henning Ludwig; Christoph Parthier; Jens-Ulrich Rahfeld; Mirko Buchholz; Tresfore Dambe; Hans-Ulrich Demuth
Structures of glycosylated mammalian glutaminyl cyclases reveal conformational variability near the active center.
Biochemistry 2011;50(28):6280-8.
2011: Michael Schöpfel; Ulrich Arnold; Anastasia Tziridis; Milton T Stubbs
Towards a restriction proteinase: construction of a self-activating enzyme.
Chembiochem : a European journal of chemical biology 2011;12(10):1523-7.
2010: Christian Löw; Piotr Neumann; Henning Tidow; Ulrich Weininger; Caroline Haupt; Beatrice Friedrich-Epler; Christian Scholz; Milton T Stubbs; Jochen Balbach
Crystal structure determination and functional characterization of the metallochaperone SlyD from Thermus thermophilus.
Journal of molecular biology 2010;398(3):375-90.
2010: Cindy Schulenburg; Ulrich Weininger; Piotr Neumann; Heike Meiselbach; Milton T Stubbs; Heinrich Sticht; Jochen Balbach; Renate Ulbrich-Hofmann; Ulrich Arnold
Impact of the C-terminal disulfide bond on the folding and stability of onconase.
Chembiochem : a European journal of chemical biology 2010;11(7):978-86.
2009: Ulrich Weininger; Markus Zeeb; Piotr Neumann; Christian Löw; Milton T Stubbs; Georg Lipps; Jochen Balbach
Structure-based stability analysis of an extremely stable dimeric DNA binding protein from Sulfolobus islandicus.
Biochemistry 2009;48(42):10030-7.
2009: Felix Stehle; Wolfgang Brandt; Milton T Stubbs; Carsten Milkowski; Dieter Strack
Sinapoyltransferases in the light of molecular evolution.
Phytochemistry 2009;70(15-16):1652-62.
2009: Christoph Parthier; Steffen Reedtz-Runge; Rainer Rudolph; Milton T Stubbs
Passing the baton in class B GPCRs: peptide hormone activation via helix induction?
Trends in biochemical sciences 2009;34(6):303-10.
2009: Piotr Neumann; Diana Lieber; Sylke Meyer; Philipp Dautel; Andreas Kerth; Ina Kraus; Wolfgang Garten; Milton T Stubbs
Crystal structure of the Borna disease virus matrix protein (BDV-M) reveals ssRNA binding properties.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(10):3710-5.
2008: Anita Hoffmann; Andreas Funkner; Piotr Neumann; Susanne Juhnke; Matthias Walther; Angelika Schierhorn; Ulrich Weininger; Jochen Balbach; Gunter Reuter; Milton T Stubbs
Biophysical characterization of refolded Drosophila Spätzle, a cystine knot protein, reveals distinct properties of three isoforms.
The Journal of biological chemistry 2008;283(47):32598-609.
2008: Huma Yonus; Piotr Neumann; Stephan Zimmermann; Jürgen J May; Mohamed A Marahiel; Milton T Stubbs
Crystal structure of DltA. Implications for the reaction mechanism of non-ribosomal peptide synthetase adenylation domains.
The Journal of biological chemistry 2008;283(47):32484-91.
2008: Piotr Neumann; Annett Weidner; Andreas Pech; Milton T Stubbs; Kai Tittmann
Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(45):17390-5.
2008: Anita Hoffmann; Piotr Neumann; Angelika Schierhorn; Milton T Stubbs
Crystallization of Spätzle, a cystine-knot protein involved in embryonic development and innate immunity in Drosophila melanogaster.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 8):707-10.
2008: Jakub Grzegorz Kopycki; Milton T Stubbs; Wolfgang Brandt; Martin Hagemann; Andrea Porzel; Jürgen Schmidt; Willibald Schliemann; Meinhart H Zenk; Thomas Vogt
Functional and structural characterization of a cation-dependent O-methyltransferase from the cyanobacterium Synechocystis sp. strain PCC 6803.
The Journal of biological chemistry 2008;283(30):20888-96.
2008: Jakub G Kopycki; Daniel Rauh; Alexander A Chumanevich; Piotr Neumann; Thomas Vogt; Milton T Stubbs
Biochemical and structural analysis of substrate promiscuity in plant Mg2+-dependent O-methyltransferases.
Journal of molecular biology 2008;378(1):154-64.
2008: Christian Löw; Ulrich Weininger; Piotr Neumann; Mirjam Klepsch; Hauke Lilie; Milton T Stubbs; Jochen Balbach
Structural insights into an equilibrium folding intermediate of an archaeal ankyrin repeat protein.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(10):3779-84.
2008: Felix Stehle; Milton T Stubbs; Dieter Strack; Carsten Milkowski
Heterologous expression of a serine carboxypeptidase-like acyltransferase and characterization of the kinetic mechanism.
The FEBS journal 2008;275(4):775-87.
2007: Hilmar Ebersbach; Erik Fiedler; Tanja Scheuermann; Markus Fiedler; Milton T Stubbs; Carola Reimann; Gabriele Proetzel; Rainer Rudolph; Ulrike Fiedler
Affilin-novel binding molecules based on human gamma-B-crystallin, an all beta-sheet protein.
Journal of molecular biology 2007;372(1):172-85.
2007: Christoph Parthier; Martin Kleinschmidt; Piotr Neumann; Rainer Rudolph; Susanne Manhart; Dagmar Schlenzig; Jörg Fanghänel; Jens-Ulrich Rahfeld; Hans-Ulrich Demuth; Milton T Stubbs
Crystal structure of the incretin-bound extracellular domain of a G protein-coupled receptor.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(35):13942-7.
2007: Uwe Linne; Antje Schäfer; Milton T Stubbs; Mohamed A Marahiel
Aminoacyl-coenzyme A synthesis catalyzed by adenylation domains.
FEBS letters 2007;581(5):905-10.
2005: Christof Werner; Milton T Stubbs; R Luise Krauth-Siegel; Gerhard Klebe
The crystal structure of Plasmodium falciparum glutamate dehydrogenase, a putative target for novel antimalarial drugs.
Journal of molecular biology 2005;349(3):597-607.
2004: Ruth Brenk; Emmanuel A Meyer; Klaus Reuter; Milton T Stubbs; George A Garcia; François Diederich; Gerhard Klebe
Crystallographic study of inhibitors of tRNA-guanine transglycosylase suggests a new structure-based pharmacophore for virtual screening.
Journal of molecular biology 2004;338(1):55-75.
2004: Daniel Rauh; Gerhard Klebe; Milton T Stubbs
Understanding protein-ligand interactions: the price of protein flexibility.
Journal of molecular biology 2004;335(5):1325-41.
2003: Ruth Brenk; Milton T Stubbs; Andreas Heine; Klaus Reuter; Gerhard Klebe
Flexible adaptations in the structure of the tRNA-modifying enzyme tRNA-guanine transglycosylase and their implications for substrate selectivity, reaction mechanism and structure-based drug design.
Chembiochem : a European journal of chemical biology 2003;4(10):1066-77.
2003: Daniel Rauh; Gerhard Klebe; Jörg Stürzebecher; Milton T Stubbs
ZZ made EZ: influence of inhibitor configuration on enzyme selectivity.
Journal of molecular biology 2003;330(4):761-70.
2003: Lutz Schmitt; Houssain Benabdelhak; Mark A Blight; I Barry Holland; Milton T Stubbs
Crystal structure of the nucleotide-binding domain of the ABC-transporter haemolysin B: identification of a variable region within ABC helical domains.
Journal of molecular biology 2003;330(2):333-42.
2003: M Bocola; Milton T Stubbs; Christoph A Sotriffer; B Hauer; T Friedrich; K Dittrich; Gerhard Klebe
Structural and energetic determinants for enantiopreferences in kinetic resolution of lipases.
Protein engineering 2003;16(5):319-22.
2003: Silke Bergemann; René Brecht; Frank Büttner; Daniel Guénard; Ronald Gust; Gunther Seitz; Milton T Stubbs; Sylviane Thoret
Novel B-ring modified allocolchicinoids of the NCME series: design, synthesis, antimicrotubule activity and cytotoxicity.
Bioorganic & medicinal chemistry 2003;11(7):1269-81.
2003: Ruth Brenk; Lars Naerum; Ulrich Grädler; Hans-Dieter Gerber; George A Garcia; Klaus Reuter; Milton T Stubbs; Gerhard Klebe
Virtual screening for submicromolar leads of tRNA-guanine transglycosylase based on a new unexpected binding mode detected by crystal structure analysis.
Journal of medicinal chemistry 2003;46(7):1133-43.
2003: Sabine Reyda; Christian Sohn; Gerhard Klebe; Kathrin Rall; Dirk Ullmann; Hans Dieter Jakubke; Milton T Stubbs
Reconstructing the binding site of factor Xa in trypsin reveals ligand-induced structural plasticity.
Journal of molecular biology 2003;325(5):963-77.
2002: Milton T Stubbs
Anthrax X-rayed: new opportunities for biodefence.
Trends in pharmacological sciences 2002;23(12):539-41.
2002: Jurgen J May; Nadine Kessler; Mohamed A Marahiel; Milton T Stubbs
Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(19):12120-5.
2002: Sven Grüneberg; Milton T Stubbs; Gerhard Klebe
Successful virtual screening for novel inhibitors of human carbonic anhydrase: strategy and experimental confirmation.
Journal of medicinal chemistry 2002;45(17):3588-602.
2002: Francesco Abbate; Claudiu T Supuran; Andrea Scozzafava; Pierluigi Orioli; Milton T Stubbs; Gerhard Klebe
Nonaromatic sulfonamide group as an ideal anchor for potent human carbonic anhydrase inhibitors: role of hydrogen-bonding networks in ligand binding and drug design.
Journal of medicinal chemistry 2002;45(17):3583-7.
2002: Ina Kraus; Hanno Scheffczik; Markus Eickmann; Simone Kiermayer; Milton T Stubbs; Wolfgang Garten
Crystallization and preliminary X-ray analysis of the matrix protein of Borna disease virus.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 8):1371-3.
2002: Daniel Rauh; Sabine Reyda; Gerhard Klebe; Milton T Stubbs
Trypsin mutants for structure-based drug design: expression, refolding and crystallisation.
Biological chemistry 2002;383(7-8):1309-14.
2002: Steven D Bruner; Thomas Weber; Rahul Kohli; Dirk Schwarzer; Mohamed A Marahiel; Christopher T Walsh; Milton T Stubbs
Structural basis for the cyclization of the lipopeptide antibiotic surfactin by the thioesterase domain SrfTE.
Structure (London, England : 1993) 2002;10(3):301-10.
2002: Milton T Stubbs; Sabine Reyda; Frank Dullweber; Maren Möller; Gerhard Klebe; Dieter Dorsch; Werner W K R Mederski; Hanns Wurziger
pH-dependent binding modes observed in trypsin crystals: lessons for structure-based drug design.
Chembiochem : a European journal of chemical biology 2002;3(2-3):246-9.
2002: Klaus Reuter; Silke Sanderbrand; Hassan Jomaa; Jochen Wiesner; Irina Steinbrecher; Ewald Beck; Martin Hintz; Gerhard Klebe; Milton T Stubbs
Crystal structure of 1-deoxy-D-xylulose-5-phosphate reductoisomerase, a crucial enzyme in the non-mevalonate pathway of isoprenoid biosynthesis.
The Journal of biological chemistry 2002;277(7):5378-84.
2001: Frank Dullweber; Milton T Stubbs; D Musil; Jörg Stürzebecher; Gerhard Klebe
Factorising ligand affinity: a combined thermodynamic and crystallographic study of trypsin and thrombin inhibition.
Journal of molecular biology 2001;313(3):593-614.
2001: Ulrich Grädler; Hans-Dieter Gerber; D M Goodenough-Lashua; George A Garcia; Ralf Ficner; Klaus Reuter; Milton T Stubbs; Gerhard Klebe
A new target for shigellosis: rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase.
Journal of molecular biology 2001;306(3):455-67.
2001: B G Díaz; S Gross; Irmgard Assfalg-Machleidt; Dietmar Pfeiler; N Gollmitzer; Dusica Gabrijelcic-Geiger; Milton T Stubbs; Hans Fritz; Ennes A Auerswald; Werner Machleidt
Cystatins as calpain inhibitors: engineered chicken cystatin- and stefin B-kininogen domain 2 hybrids support a cystatin-like mode of interaction with the catalytic subunit of mu-calpain.
Biological chemistry 2001;382(1):97-107.
1999: Sandra Macedo-Ribeiro; Wolfram Bode; Robert Huber; Mary Ann Quinn-Allen; Suhng Wook Kim; Thomas L Ortel; Gleb P Bourenkov; Hans D Bartunik; Milton T Stubbs; William H Kane; Pablo Fuentes-Prior
Crystal structures of the membrane-binding C2 domain of human coagulation factor V.
Nature 1999;402(6760):434-9.
1999: Jörg Stürzebecher; Helmut Vieweg; Torsten Steinmetzer; Andrea Schweinitz; Milton T Stubbs; Martin Renatus; Peter Wikström
3-Amidinophenylalanine-based inhibitors of urokinase.
Bioorganic & medicinal chemistry letters 1999;9(21):3147-52.
1999: Christian P Sommerhoff; Wolfram Bode; Pedro J B Pereira; Milton T Stubbs; Jörg Stürzebecher; G P Piechottka; Gabriele Matschiner; Albrecht Bergner
The structure of the human betaII-tryptase tetramer: fo(u)r better or worse.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(20):10984-91.
1999: Ulrich Grädler; Ralf Ficner; George A Garcia; Milton T Stubbs; Gerhard Klebe; Klaus Reuter
Mutagenesis and crystallographic studies of Zymomonas mobilis tRNA-guanine transglycosylase to elucidate the role of serine 103 for enzymatic activity.
FEBS letters 1999;454(1-2):142-6.
1998: Martin Renatus; Wolfram Bode; Robert Huber; Jörg Stürzebecher; Milton T Stubbs
Structural and functional analyses of benzamidine-based inhibitors in complex with trypsin: implications for the inhibition of factor Xa, tPA, and urokinase.
Journal of medicinal chemistry 1998;41(27):5445-56.
1998: B Gabriel; Milton T Stubbs; Albrecht Bergner; Jörg Hauptmann; Wolfram Bode; Jörg Stürzebecher; Luis Moroder
Design of benzamidine-type inhibitors of factor Xa.
Journal of medicinal chemistry 1998;41(22):4240-50.
1998: M Becker; Milton T Stubbs; Robert Huber
Crystallization of phycoerythrin 545 of Rhodomonas lens using detergents and unusual additives.
Protein science : a publication of the Protein Society 1998;7(3):580-6.
1998: Milton T Stubbs; Martin Renatus; Wolfram Bode
An active zymogen: unravelling the mystery of tissue-type plasminogen activator.
Biological chemistry 1998;379(2):95-103.
1997: Martin Renatus; Milton T Stubbs; Robert Huber; P Bringmann; Peter Donner; WD Schleuning; Wolfram Bode
Catalytic domain structure of vampire bat plasminogen activator: a molecular paradigm for proteolysis without activation cleavage.
Biochemistry 1997;36(44):13483-93.
1997: Martin Renatus; Wolfram Bode; Robert Huber; Jörg Stürzebecher; Dagmar Prasa; S Fischer; U Kohnert; Milton T Stubbs
Structural mapping of the active site specificity determinants of human tissue-type plasminogen activator. Implications for the design of low molecular weight substrates and inhibitors.
The Journal of biological chemistry 1997;272(35):21713-9.
1997: Martin Renatus; Richard A Engh; Milton T Stubbs; Robert Huber; S Fischer; U Kohnert; Wolfram Bode
Lysine 156 promotes the anomalous proenzyme activity of tPA: X-ray crystal structure of single-chain human tPA.
The EMBO journal 1997;16(16):4797-805.
1997: R Morenweiser; Ennes A Auerswald; A van de Locht; Hans Fritz; Jörg Stürzebecher; Milton T Stubbs
Structure-based design of a potent chimeric thrombin inhibitor.
The Journal of biological chemistry 1997;272(32):19938-42.
1997: Milton T Stubbs; R Morenweiser; Jörg Stürzebecher; M Bauer; Wolfram Bode; Robert Huber; G P Piechottka; Gabriele Matschiner; Christian P Sommerhoff; Hans Fritz; Ennes A Auerswald
The three-dimensional structure of recombinant leech-derived tryptase inhibitor in complex with trypsin. Implications for the structure of human mast cell tryptase and its inhibition.
The Journal of biological chemistry 1997;272(32):19931-7.
1997: Wolfram Bode; Hans Brandstetter; T Mather; Milton T Stubbs
Comparative analysis of haemostatic proteinases: structural aspects of thrombin, factor Xa, factor IXa and protein C.
Thrombosis and haemostasis 1997;78(1):501-11.
1997: A van de Locht; Wolfram Bode; Robert Huber; BF Le Bonniec; SR Stone; C T Esmon; Milton T Stubbs
The thrombin E192Q-BPTI complex reveals gross structural rearrangements: implications for the interaction with antithrombin and thrombomodulin.
The EMBO journal 1997;16(11):2977-84.
1996: A van de Locht; Milton T Stubbs; Wolfram Bode; T Friedrich; C Bollschweiler; W Höffken; Robert Huber
The ornithodorin-thrombin crystal structure, a key to the TAP enigma?
The EMBO journal 1996;15(22):6011-7.
1996: A van de Locht; Milton T Stubbs; M Bauer; Wolfram Bode
Crystallographic evidence that the F2 kringle catalytic domain linker of prothrombin does not cover the fibrinogen recognition exosite.
The Journal of biological chemistry 1996;271(7):3413-6.
1996: Ennes A Auerswald; Dorit Nägler; S Gross; Irmgard Assfalg-Machleidt; Milton T Stubbs; Christoph Eckerskorn; Werner Machleidt; Hans Fritz
Hybrids of chicken cystatin with human kininogen domain 2 sequences exhibit novel inhibition of calpain, improved inhibition of actinidin and impaired inhibition of papain, cathepsin L and cathepsin B.
European journal of biochemistry / FEBS 1996;235(3):534-42.
1995: Milton T Stubbs; Robert Huber; Wolfram Bode
Crystal structures of factor Xa specific inhibitors in complex with trypsin: structural grounds for inhibition of factor Xa and selectivity against thrombin.
FEBS letters 1995;375(1-2):103-7.
1995: Werner Machleidt; Dorit Nägler; Irmgard Assfalg-Machleidt; Milton T Stubbs; Hans Fritz; Ennes A Auerswald
Temporary inhibition of papain by hairpin loop mutants of chicken cystatin. Distorted binding of the loops results in cleavage of the Gly(9)-Ala10 bond.
FEBS letters 1995;361(2-3):185-90.
1995: Ennes A Auerswald; Dorit Nägler; Irmgard Assfalg-Machleidt; Milton T Stubbs; Werner Machleidt; Hans Fritz
Hairpin loop mutations of chicken cystatin have different effects on the inhibition of cathepsin B, cathepsin L and papain.
FEBS letters 1995;361(2-3):179-84.
1992: Milton T Stubbs; Hartmut Oschkinat; I Mayr; Robert Huber; H Angliker; S R Stone; Wolfram Bode
The interaction of thrombin with fibrinogen. A structural basis for its specificity.
European journal of biochemistry / FEBS 1992;206(1):187-95.
1990: Milton T Stubbs; Bernd Laber; Wolfram Bode; Robert Huber; Roman Jerala; Brigita Lenarcic; V Turk
The refined 2.4 A X-ray crystal structure of recombinant human stefin B in complex with the cysteine proteinase papain: a novel type of proteinase inhibitor interaction.
The EMBO journal 1990;9(6):1939-47.
1990: Wolfram Bode; Richard A Engh; D Musil; Bernd Laber; Milton T Stubbs; Robert Huber; V Turk
Mechanism of interaction of cysteine proteinases and their protein inhibitors as compared to the serine proteinase-inhibitor interaction.
Biological chemistry Hoppe-Seyler 1990;371 Suppl():111-8.
1990: Milton T Stubbs; L Summers; I Mayr; M Schneider; Wolfram Bode; Robert Huber; A Ries; K Kühn
Crystals of the NC1 domain of human type IV collagen.
Journal of molecular biology 1990;211(4):683-4.