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Hendrik Stunnenberg

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David Castel; Philippos Mourikis; Stefanie J J Bartels; Arie B Brinkman; Shahragim Tajbakhsh; Hendrik G Stunnenberg
Dynamic binding of RBPJ is determined by Notch signaling status.
Peter Burghout; Kees-Jan Françoijs; Eva M Janssen-Megens; Hendrik G Stunnenberg; Christa E van der Gaast-de Jongh; Aldert Zomer; Peter W M Hermans
Streptococcus pneumoniae folate biosynthesis responds to environmental CO2 levels.
Wieteke A M Hoeijmakers; Adriana M Salcedo-Amaya; Arne H Smits; Hendrik G Stunnenberg; Moritz Treeck; Kees-Jan Françoijs; Tim-Wolf Gilberger; Richárd Bártfai
H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome.

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2013: David Castel; Philippos Mourikis; Stefanie J J Bartels; Arie B Brinkman; Shahragim Tajbakhsh; Hendrik G Stunnenberg
Dynamic binding of RBPJ is determined by Notch signaling status.
Genes & development 2013;27(9):1059-71.
2013: Peter Burghout; Kees-Jan Françoijs; Eva M Janssen-Megens; Hendrik G Stunnenberg; Christa E van der Gaast-de Jongh; Aldert Zomer; Peter W M Hermans
Streptococcus pneumoniae folate biosynthesis responds to environmental CO2 levels.
Journal of bacteriology 2013;195(7):1573-82.
2013: Wieteke A M Hoeijmakers; Adriana M Salcedo-Amaya; Arne H Smits; Hendrik G Stunnenberg; Moritz Treeck; Kees-Jan Françoijs; Tim-Wolf Gilberger; Richárd Bártfai
H2A.Z/H2B.Z double-variant nucleosomes inhabit the AT-rich promoter regions of the Plasmodium falciparum genome.
Molecular microbiology 2013;87(5):1061-73.
2013: Wieteke A M Hoeijmakers; Richárd Bártfai; Hendrik G Stunnenberg
Transcriptome analysis using RNA-Seq.
Methods in molecular biology (Clifton, N.J.) 2013;923():221-39.
2012: Femke Simmer; Alberto Villanueva; Lucia Altucci; Yassen Assenov; Christoph Bock; Arie B Brinkman; Vittorio Colantuoni; Manel Esteller; Dori Huertas; Anita Kaan; Thomas Lengauer; Filomena Matarese; Lina Sabatino; Hendrik G Stunnenberg
Comparative genome-wide DNA methylation analysis of colorectal tumor and matched normal tissues.
Epigenetics : official journal of the DNA Methylation Society 2012;7(12):1355-67.
2012: Raquel Pereira; Santiago Pérez-Rodríguez; Fátima Rodríguez-Barrios; Mayra Stuhldreier; Hendrik G Stunnenberg; Lucia Altucci; Rosaria Benedetti; Vincenzo Carafa; Mariarosaria Conte; José García-Rodríguez; Hinrich Gronemeyer; Angela Nebbioso; Angel R de Lera
Indole-derived psammaplin A analogues as epigenetic modulators with multiple inhibitory activities.
Journal of medicinal chemistry 2012;55(22):9467-91.
2012: Christof Grüring; Arlett Heiber; Florian Kruse; Jude M Przyborski; Hanno Schoeler; Nica Borgese; Sara F Colombo; Elisa Fasana; Sven Flemming; Gianluigi Franci; Tim-Wolf Gilberger; Hendrik G Stunnenberg; Tobias Spielmann
Uncovering common principles in protein export of malaria parasites.
Cell host & microbe 2012;12(5):717-29.
2012: Joost H A Martens; Sadia Saeed; Femke Simmer; Abhishek A Singh; Lucia Altucci; Amit Mandoli; Edo Vellenga; Bart-Jan Wierenga; Hendrik G Stunnenberg
ERG and FLI1 binding sites demarcate targets for aberrant epigenetic regulation by AML1-ETO in acute myeloid leukemia.
Blood 2012;120(19):4038-48.
2012: Wieteke A M Hoeijmakers; Hendrik G Stunnenberg; Richárd Bártfai
Placing the Plasmodium falciparum epigenome on the map.
Trends in parasitology 2012;28(11):486-95.
2012: Johanneke Kleinnijenhuis; Dirk de Jong; Daniela C Ifrim; Cor Jacobs; Leo A B Joosten; Frank Preijers; Jessica Quintin; Sadia Saeed; Hendrik G Stunnenberg; Reinout van Crevel; Jos W M van der Meer; Joke van Loenhout; Ramnik J Xavier; Mihai G Netea
Bacille Calmette-Guerin induces NOD2-dependent nonspecific protection from reinfection via epigenetic reprogramming of monocytes.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(43):17537-42.
2012: Sadia Saeed; Maryam Shahhoseini; Lucia Altucci; Kees-Jan Francoijs; Gianmaria Frigè; Martijn Huynen; Colin Logie; Joost H A Martens; Saverio Minucci; Fiona G Nielsen; Lianne Raats; Mauro Romanenghi; Hendrik G Stunnenberg
Chromatin accessibility, p300, and histone acetylation define PML-RARα and AML1-ETO binding sites in acute myeloid leukemia.
Blood 2012;120(15):3058-68.
2012: Wieteke A M Hoeijmakers; Arne H Smits; Hendrik G Stunnenberg; Jennifer C Volz; Till Voss; Johanna Wetzel; Alan F Cowman; Christian Flueck; Kees-Jan Françoijs; Richárd Bártfai
Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony.
Cellular microbiology 2012;14(9):1391-401.
2012: Jessica Quintin; Sadia Saeed; Hendrik G Stunnenberg; Jos W M van der Meer; Cisca Wijmenga; Ramnik J Xavier; Evangelos J Giamarellos-Bourboulis; Daniela C Ifrim; Liesbeth Jacobs; Trees Jansen; Leo A B Joosten; Bart Jan Kullberg; Colin Logie; Joost H A Martens; Mihai G Netea
Candida albicans infection affords protection against reinfection via functional reprogramming of monocytes.
Cell host & microbe 2012;12(2):223-32.
2012: Arie B Brinkman; Andreas Gnirke; Hongcang Gu; Hendrik Marks; Filomena Matarese; Alexander Meissner; Femke Simmer; Stefanie J J Bartels; Christoph Bock; Yingying Zhang; Hendrik G Stunnenberg
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.
Genome research 2012;22(6):1128-38.
2012: Hendrik Marks; Roberta Menafra; Jennifer Nichols; Austin Smith; Sergey Denissov; Helmut Hofemeister; Kenneth Jones; Tüzer Kalkan; Andrea Kranz; A Francis Stewart; Hendrik G Stunnenberg
The transcriptional and epigenomic foundations of ground state pluripotency.
Cell 2012;149(3):590-604.
2012: Michael Boergesen; Sandrine Caron; Barbara Gross; Jan-Åke Gustafsson; Dik Hagenbeek; Fanny Lalloyer; Hilde I Nebb; Thomas Åskov Pedersen; Bart Staels; Knut R Steffensen; Hendrik G Stunnenberg; Simon J van Heeringen; Christian Bindesbøll; Susanne Mandrup
Genome-wide profiling of liver X receptor, retinoid X receptor, and peroxisome proliferator-activated receptor α in mouse liver reveals extensive sharing of binding sites.
Molecular and cellular biology 2012;32(4):852-67.
2012: Adalberto Costessi; Nawel Mahrour; Vikram Sharma; Marieke A Stoel; Joan W Conaway; Ronald C Conaway; Rieka Stunnenberg; Esther Tijchon; Hendrik G Stunnenberg
The human EKC/KEOPS complex is recruited to Cullin2 ubiquitin ligases by the human tumour antigen PRAME.
PloS one 2012;7(8):e42822.
2012: Evelien Middeljans; Vikram Sharma; Hendrik G Stunnenberg; Xi Wan; Pascal W Jansen; Colin Logie
SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes.
PloS one 2012;7(3):e33834.
2011: Boran Kartal; Jan T Keltjens; Wouter J Maalcke; Huub J M Op den Camp; Hendrik G Stunnenberg; Irina Cirpus; Naomi M de Almeida; Kees-Jan Francoijs; Wim Geerts; Jolein Gloerich; Harry R Harhangi; Eva M Janssen-Megens; Mike S.M. Jetten; Marc Strous
Molecular mechanism of anaerobic ammonium oxidation.
Nature 2011;479(7371):127-30.
2011: Adalberto Costessi; Laurence Florens; Pascal W Jansen; Nawel Mahrour; Skylar Martin-Brown; Dotan Sela; Marieke A Stoel; Joan W Conaway; Ronald C Conaway; Rieka Stunnenberg; Esther Tijchon; Michael P Washburn; Hendrik G Stunnenberg
The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters.
The EMBO journal 2011;30(18):3786-98.
2011: Nagesha A S Rao; Michael N Alexis; Aristotelis Chatziioannou; Kees-Jan Francoijs; Fragiskos N Kolisis; Melysia T McCalman; Dimitra J Mitsiou; Panagiotis Moulos; Hendrik G Stunnenberg
Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes.
Genome research 2011;21(9):1404-16.
2011: Max Koeppel; Daniela Kramer; Marianne Hartmann; Eva Janssen-Megens; Leonie Smeenk; Hendrik G Stunnenberg; Simon J van Heeringen; Marion Lohrum
Crosstalk between c-Jun and TAp73alpha/beta contributes to the apoptosis-survival balance.
Nucleic acids research 2011;39(14):6069-85.
2011: Bas E Dutilh; Kees-Jan Françoijs; Harry R Harhangi; Bart de Wild; Mike S.M. Jetten; Rasa Jurgelenaite; Huub J M Op den Camp; Markus Schmid; Marc Strous; Hendrik G Stunnenberg; Radek Szklarczyk; Sacha A F T van Hijum; Martijn A Huynen
FACIL: Fast and Accurate Genetic Code Inference and Logo.
Bioinformatics (Oxford, England) 2011;27(14):1929-33.
2011: Wieteke A M Hoeijmakers; Richárd Bártfai; Kees-Jan Françoijs; Hendrik G Stunnenberg
Linear amplification for deep sequencing.
Nature protocols 2011;6(7):1026-36.
2011: Hendrik G Stunnenberg; Michiel Vermeulen
Towards cracking the epigenetic code using a combination of high-throughput epigenomics and quantitative mass spectrometry-based proteomics.
BioEssays : news and reviews in molecular, cellular and developmental biology 2011;33(7):547-51.
2011: Joost H A Martens; Hendrik G Stunnenberg; Colin Logie
The decade of the epigenomes?
Genes & cancer 2011;2(6):680-7.
2011: Dave Richard; Richard Bartfai; Jennifer Volz; Stuart A Ralph; Sylke Muller; Hendrik G Stunnenberg; Alan F Cowman
A genome-wide chromatin-associated nuclear peroxiredoxin from the malaria parasite Plasmodium falciparum.
The Journal of biological chemistry 2011;286(13):11746-55.
2011: Serguei Denissov; Frédéric Lessard; Christine Mayer; Victor Stefanovsky; Marc van Driel; Ingrid Grummt; Tom Moss; Hendrik G Stunnenberg
A model for the topology of active ribosomal RNA genes.
EMBO reports 2011;12(3):231-7.
2011: S Saeed; Colin Logie; Hendrik G Stunnenberg; Joost H A Martens
Genome-wide functions of PML-RARα in acute promyelocytic leukaemia.
British journal of cancer 2011;104(4):554-8.
2011: Ru Huang; Markus Jaritz; Thorsten Klampfl; Robert Kralovics; Hendrik Marks; Andreas Sommer; Hendrik G Stunnenberg; Ido M Tamir; Irena Vlatkovic; Denise P Barlow; Philipp Guenzl; Florian M Pauler
An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs.
PloS one 2011;6(11):e27288.
2011: Stefanie J J Bartels; Arie B Brinkman; Pascal W T C Jansen; Cornelia G Spruijt; Michiel Vermeulen; Hendrik G Stunnenberg
A SILAC-based screen for Methyl-CpG binding proteins identifies RBP-J as a DNA methylation and sequence-specific binding protein.
PloS one 2011;6(10):e25884.
2011: Anja Nitzsche; Maciej Paszkowski-Rogacz; Filomena Matarese; Eva M Janssen-Megens; Nina C Hubner; Herbert Schulz; Ingrid de Vries; Li Ding; Norbert Huebner; Matthias Mann; Hendrik G Stunnenberg; Frank Buchholz
RAD21 cooperates with pluripotency transcription factors in the maintenance of embryonic stem cell identity.
PloS one 2011;6(5):e19470.
2011: Leonie Smeenk; Simon J van Heeringen; Max Koeppel; Bianca Gilbert; Eva Janssen-Megens; Hendrik G Stunnenberg; Marion Lohrum
Role of p53 serine 46 in p53 target gene regulation.
PloS one 2011;6(3):e17574.
2011: Jamie M Kramer; Korinna Kochinke; Merel A W Oortveld; Hendrik Marks; Daniela Kramer; Eiko K de Jong; Zoltan Asztalos; J Timothy Westwood; Hendrik G Stunnenberg; Marla B Sokolowski; Krystyna Keleman; Huiqing Zhou; Hans van Bokhoven; Annette Schenck
Epigenetic regulation of learning and memory by Drosophila EHMT/G9a.
PLoS biology 2011;9(1):e1000569.
2010: Maryam Shahhoseini; Raha Favaedi; Hossein Baharvand; Vikram Sharma; Hendrik G Stunnenberg
Evidence for a dynamic role of the linker histone variant H1x during retinoic acid-induced differentiation of NT2 cells.
FEBS letters 2010;584(22):4661-4.
2010: Arie B Brinkman; Femke Simmer; Kelong Ma; Anita Kaan; Jingde Zhu; Hendrik G Stunnenberg
Whole-genome DNA methylation profiling using MethylCap-seq.
Methods (San Diego, Calif.) 2010;52(3):232-6.
2010: Christoph Bock; Eleni M Tomazou; Arie B Brinkman; Fabian Müller; Femke Simmer; Hongcang Gu; Natalie Jäger; Andreas Gnirke; Hendrik G Stunnenberg; Alexander Meissner
Quantitative comparison of genome-wide DNA methylation mapping technologies.
Nature biotechnology 2010;28(10):1106-14.
2010: Cornelia G Spruijt; Stefanie J J Bartels; Arie B Brinkman; Jorrit V Tjeertes; Ina Poser; Hendrik G Stunnenberg; Michiel Vermeulen
CDK2AP1/DOC-1 is a bona fide subunit of the Mi-2/NuRD complex.
Molecular bioSystems 2010;6(9):1700-6.
2010: Evelyn N Kouwenhoven; Simon J van Heeringen; Juan J Tena; Martin Oti; Bas E Dutilh; M Eva Alonso; Elisa de la Calle-Mustienes; Leonie Smeenk; Tuula Rinne; Lilian Parsaulian; Emine Bolat; Rasa Jurgelenaite; Martijn A Huynen; Alexander Hoischen; Joris Veltman; Han G Brunner; Tony Roscioli; Emily Oates; Meredith Wilson; Miguel Manzanares; José Luis Gómez-Skarmeta; Hendrik G Stunnenberg; Marion Lohrum; Hans van Bokhoven; Huiqing Zhou
Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus.
PLoS genetics 2010;6(8):e1001065.
2010: Gong-Hong Wei; Gwenael Badis; Michael Berger; Teemu Kivioja; Kimmo Palin; Martin Enge; Martin Bonke; Arttu Jolma; Markku Varjosalo; Andrew R Gehrke; Jian Yan; Shaheynoor Talukder; Mikko Turunen; Mikko Taipale; Hendrik G Stunnenberg; Esko Ukkonen; Timothy R Hughes; Martha L Bulyk; Jussi Taipale
Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo.
The EMBO journal 2010;29(13):2147-60.
2010: Adriana M Salcedo-Amaya; Wieteke A M Hoeijmakers; Richard Bártfai; Hendrik G Stunnenberg
Malaria: could its unusual epigenome be the weak spot?
The international journal of biochemistry & cell biology 2010;42(6):781-4.
2010: Hendrik Marks; Gert Jan C Veenstra; Hendrik G Stunnenberg
Insightful tales from single embryonic cells.
Cell stem cell 2010;6(5):397-8.
2010: Melissa R van Dijk; Ben C L van Schaijk; Shahid M Khan; Maaike W van Dooren; Jai Ramesar; Szymon Kaczanowski; Geert-Jan van Gemert; Hans Kroeze; Hendrik G Stunnenberg; Wijnand Eling; Robert W Sauerwein; Andrew P Waters; Chris J Janse
Three members of the 6-cys protein family of Plasmodium play a role in gamete fertility.
PLoS pathogens 2010;6(4):e1000853.
2010: Joost H A Martens; Arie B Brinkman; Femke Simmer; Kees-Jan Francoijs; Angela Nebbioso; Felicetto Ferrara; Lucia Altucci; Hendrik G Stunnenberg
PML-RARalpha/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia.
Cancer cell 2010;17(2):173-85.
2010: Christian Flueck; Richard Bartfai; Igor Niederwieser; Kathrin Witmer; Blaise T F Alako; Suzette Moes; Zbynek Bozdech; Paul Jenoe; Hendrik G Stunnenberg; Till S Voss
A major role for the Plasmodium falciparum ApiAP2 protein PfSIP2 in chromosome end biology.
PLoS pathogens 2010;6(2):e1000784.
2010: Richárd Bártfai; Wieteke A M Hoeijmakers; Adriana M Salcedo-Amaya; Arne H Smits; Eva Janssen-Megens; Anita M Kaan; Moritz Treeck; Tim-Wolf Gilberger; Kees-Jan Françoijs; Hendrik G Stunnenberg
H2A.Z demarcates intergenic regions of the plasmodium falciparum epigenome that are dynamically marked by H3K9ac and H3K4me3.
PLoS pathogens 2010;6(12):e1001223.
2010: Robert C Akkers; Simon J van Heeringen; J Robert Manak; Roland D Green; Hendrik G Stunnenberg; Gert Jan C Veenstra
ChIP-chip designs to interrogate the genome of Xenopus embryos for transcription factor binding and epigenetic regulation.
PloS one 2010;5(1):e8820.
2009: Willem-Jan Welboren; Fred C G J Sweep; Paul N Span; Hendrik G Stunnenberg
Genomic actions of estrogen receptor alpha: what are the targets and how are they regulated?
Endocrine-related cancer 2009;16(4):1073-89.
2009: Ellen H Jeninga; Anne Bugge; Ronni Nielsen; Sander Kersten; Nicole Hamers; Christian Dani; Martin Wabitsch; Ruud Berger; Hendrik G Stunnenberg; Susanne Mandrup; Eric Kalkhoven
Peroxisome proliferator-activated receptor gamma regulates expression of the anti-lipolytic G-protein-coupled receptor 81 (GPR81/Gpr81).
The Journal of biological chemistry 2009;284(39):26385-93.
2009: Robert C Akkers; Simon J van Heeringen; Ulrike G Jacobi; Eva M Janssen-Megens; Kees-Jan Françoijs; Hendrik G Stunnenberg; Gert Jan C Veenstra
A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos.
Developmental cell 2009;17(3):425-34.
2009: Christian Flueck; Richard Bartfai; Jennifer Volz; Igor Niederwieser; Adriana M Salcedo-Amaya; Blaise T F Alako; Florian Ehlgen; Stuart A Ralph; Alan F Cowman; Zbynek Bozdech; Hendrik G Stunnenberg; Till S Voss
Plasmodium falciparum heterochromatin protein 1 marks genomic loci linked to phenotypic variation of exported virulence factors.
PLoS pathogens 2009;5(9):e1000569.
2009: Hendrik Marks; Jennifer C Chow; Sergei Denissov; Kees-Jan Françoijs; Neil Brockdorff; Edith Heard; Hendrik G Stunnenberg
High-resolution analysis of epigenetic changes associated with X inactivation.
Genome research 2009;19(8):1361-73.
2009: Morten Beck Trelle; Adriana M Salcedo-Amaya; Adrian M Cohen; Hendrik G Stunnenberg; Ole N Jensen
Global histone analysis by mass spectrometry reveals a high content of acetylated lysine residues in the malaria parasite Plasmodium falciparum.
Journal of proteome research 2009;8(7):3439-50.
2009: Adriana M Salcedo-Amaya; Marc A van Driel; Blaise T Alako; Morten B Trelle; Antonia M G van den Elzen; Adrian M Cohen; Eva M Janssen-Megens; Marga van de Vegte-Bolmer; Rebecca R Selzer; A Leonardo Iniguez; Roland D Green; Robert W Sauerwein; Ole N Jensen; Hendrik G Stunnenberg
Dynamic histone H3 epigenome marking during the intraerythrocytic cycle of Plasmodium falciparum.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(24):9655-60.
2009: Willem-Jan Welboren; Marc A van Driel; Eva M Janssen-Megens; Simon J van Heeringen; Fred Cgj Sweep; Paul N Span; Hendrik G Stunnenberg
ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands.
The EMBO journal 2009;28(10):1418-28.
2009: Zita Nagy; Anne Riss; Christophe Romier; Xavier Le Guezennec; Ashok R Dongre; Meritxell Orpinell; Jiahuai Han; Hendrik G Stunnenberg; Làszlò Tora
The human SPT20-containing SAGA complex plays a direct role in the regulation of endoplasmic reticulum stress-induced genes.
Molecular and cellular biology 2009;29(6):1649-60.
2009: Silvia Haase; Susann Herrmann; Christof Grüring; Arlett Heiber; Pascal W Jansen; Christine Langer; Moritz Treeck; Ana Cabrera; Caroline Bruns; Nicole S Struck; Maya Kono; Klemens Engelberg; Ulrike Ruch; Hendrik G Stunnenberg; Tim-Wolf Gilberger; Tobias Spielmann
Sequence requirements for the export of the Plasmodium falciparum Maurer's clefts protein REX2.
Molecular microbiology 2009;71(4):1003-17.
2009: Lucia Altucci; Hendrik G Stunnenberg
Time for epigenetics.
The international journal of biochemistry & cell biology 2009;41(1):2-3.
2008: Ronni Nielsen; Thomas Askov Pedersen; Dik Hagenbeek; Panagiotis Moulos; Rasmus Siersbaek; Eva Megens; Sergei Denissov; Michael Børgesen; Kees-Jan Francoijs; Susanne Mandrup; Hendrik G Stunnenberg
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis.
Genes & development 2008;22(21):2953-67.
2008: Edwin Lasonder; Chris J Janse; Geert-Jan van Gemert; Gunnar R Mair; Adriaan M W Vermunt; Bruno Douradinha; Vera van Noort; Martijn A Huynen; Adrian J F Luty; Hans Kroeze; Shahid M Khan; Robert W Sauerwein; Andrew P Waters; Matthias Mann; Hendrik G Stunnenberg
Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivity.
PLoS pathogens 2008;4(10):e1000195.
2008: Leonie Smeenk; Simon J van Heeringen; Max Koeppel; Marc A van Driel; Stefanie J J Bartels; Robert C Akkers; Sergei Denissov; Hendrik G Stunnenberg; Marion Lohrum
Characterization of genome-wide p53-binding sites upon stress response.
Nucleic acids research 2008;36(11):3639-54.
2008: Markku Varjosalo; Mikael Björklund; Fang Cheng; Heidi Syvänen; Teemu Kivioja; Sami Kilpinen; Zairen Sun; Olli Kallioniemi; Hendrik G Stunnenberg; Wei-Wu He; Päivi Ojala; Jussi Taipale
Application of active and kinase-deficient kinome collection for identification of kinases regulating hedgehog signaling.
Cell 2008;133(3):537-48.
2008: Pantelis Hatzis; Laurens G van der Flier; Marc A van Driel; Victor Guryev; Fiona Nielsen; Sergei Denissov; Isaäc J Nijman; Jan Koster; Evan E Santo; Willem Welboren; Rogier Versteeg; Edwin Cuppen; Marc van de Wetering; Hans Clevers; Hendrik G Stunnenberg
Genome-wide pattern of TCF7L2/TCF4 chromatin occupancy in colorectal cancer cells.
Molecular and cellular biology 2008;28(8):2732-44.
2008: Nikolay S Outchkourov; Will Roeffen; Anita Kaan; Josephine Jansen; Adrian Luty; Danielle Schuiffel; Geert-Jan van Gemert; Marga van de Vegte-Bolmer; Robert W Sauerwein; Hendrik G Stunnenberg
Correctly folded Pfs48/45 protein of Plasmodium falciparum elicits malaria transmission-blocking immunity in mice.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(11):4301-5.
2008: Silvia Haase; Ana Cabrera; Christine Langer; Moritz Treeck; Nicole Struck; Susann Herrmann; Pascal W Jansen; Iris Bruchhaus; Anna Bachmann; Suzana Dias; Alan F Cowman; Hendrik G Stunnenberg; Tobias Spielmann; Tim-Wolf Gilberger
Characterization of a conserved rhoptry-associated leucine zipper-like protein in the malaria parasite Plasmodium falciparum.
Infection and immunity 2008;76(3):879-87.
2008: Yue Zhao; Guillaume Lang; Saya Ito; Jacques Bonnet; Eric Metzger; Shun Sawatsubashi; Eriko Suzuki; Xavier Le Guezennec; Hendrik G Stunnenberg; Aleksey N Krasnov; Sofia Georgieva; Roland Schüle; Ken-Ichi Takeyama; Shigeaki Kato; Làszlò Tora; Didier Devys
A TFTC/STAGA module mediates histone H2A and H2B deubiquitination, coactivates nuclear receptors, and counteracts heterochromatin silencing.
Molecular cell 2008;29(1):92-101.
2007: Michiel Vermeulen; Klaas Willem Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Hendrik G Stunnenberg; Matthias Mann; H Th Marc Timmers
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.
Cell 2007;131(1):58-69.
2007: Maxim Nekrasov; Tetyana Klymenko; Sven Fraterman; Bernadett Papp; Katarzyna Oktaba; Thomas Köcher; Adrian Cohen; Hendrik G Stunnenberg; Matthias Wilm; Jürg Müller
Pcl-PRC2 is needed to generate high levels of H3-K27 trimethylation at Polycomb target genes.
The EMBO journal 2007;26(18):4078-88.
2007: Torill Høiby; Huiqing Zhou; Dimitra J Mitsiou; Hendrik G Stunnenberg
A facelift for the general transcription factor TFIIA.
Biochimica et biophysica acta 2007;1769(7-8):429-36.
2007: Nikolay S Outchkourov; Adriaan Vermunt; Josephine Jansen; Anita M Kaan; Will Roeffen; Karina Teelen; Edwin Lasonder; Anneke Braks; Marga van de Vegte-Bolmer; Li Yan Qiu; Robert W Sauerwein; Hendrik G Stunnenberg
Epitope analysis of the malaria surface antigen pfs48/45 identifies a subdomain that elicits transmission blocking antibodies.
The Journal of biological chemistry 2007;282(23):17148-56.
2007: Sergey Denissov; Marc van Driel; Renate Voit; Maarten Hekkelman; Tim Hulsen; Nouria Hernandez; Ingrid Grummt; Ron Wehrens; Hendrik G Stunnenberg
Identification of novel functional TBP-binding sites and general factor repertoires.
The EMBO journal 2007;26(4):944-54.
2007: Marion Lohrum; Hendrik G Stunnenberg; Colin Logie
The new frontier in cancer research: deciphering cancer epigenetics.
The international journal of biochemistry & cell biology 2007;39(7-8):1450-61.
2007: Arie B Brinkman; Sebastiaan W C Pennings; Georgia G Braliou; Luc E G Rietveld; Hendrik G Stunnenberg
DNA methylation immediately adjacent to active histone marking does not silence transcription.
Nucleic acids research 2007;35(3):801-11.
2006: Ronni Nielsen; Lars Grøntved; Hendrik G Stunnenberg; Susanne Mandrup
Peroxisome proliferator-activated receptor subtype- and cell-type-specific activation of genomic target genes upon adenoviral transgene delivery.
Molecular and cellular biology 2006;26(15):5698-714.
2006: Michiel Vermeulen; Wendy Walter; Xavier Le Guezennec; Jaehoon Kim; Rajeswari S Edayathumangalam; Edwin Lasonder; Karolin Luger; Robert G Roeder; Colin Logie; Shelley L Berger; Hendrik G Stunnenberg
A feed-forward repression mechanism anchors the Sin3/histone deacetylase and N-CoR/SMRT corepressors on chromatin.
Molecular and cellular biology 2006;26(14):5226-36.
2006: Arie B Brinkman; Thijs Roelofsen; Sebastiaan W C Pennings; Joost H A Martens; Thomas Jenuwein; Hendrik G Stunnenberg
Histone modification patterns associated with the human X chromosome.
EMBO reports 2006;7(6):628-34.
2006: Huiqing Zhou; Salvatore Spicuglia; James Hsieh; Dimitra J Mitsiou; Torill Høiby; Gert Jan C Veenstra; Stanley J Korsmeyer; Hendrik G Stunnenberg
Uncleaved TFIIA is a substrate for taspase 1 and active in transcription.
Molecular and cellular biology 2006;26(7):2728-35.
2006: Sascha Mendjan; Mikko Taipale; Jop Kind; Herbert Holz; Philipp Gebhardt; Malgorzata Schelder; Michiel Vermeulen; Alessia Buscaino; Kent Duncan; Juerg Mueller; Matthias Wilm; Hendrik G Stunnenberg; Harald Saumweber; Asifa Akhtar
Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila.
Molecular cell 2006;21(6):811-23.
2006: Xavier Le Guezennec; Michiel Vermeulen; Arie B Brinkman; Wieteke A M Hoeijmakers; Adrian Cohen; Edwin Lasonder; Hendrik G Stunnenberg
MBD2/NuRD and MBD3/NuRD, two distinct complexes with different biochemical and functional properties.
Molecular and cellular biology 2006;26(3):843-51.
2006: Xavier Le Guezennec; Michiel Vermeulen; Hendrik G Stunnenberg
Molecular characterization of Sin3 PAH-domain interactor specificity and identification of PAH partners.
Nucleic acids research 2006;34(14):3929-37.
2005: Xavier Le Guezennec; Arie B Brinkman; Michiel Vermeulen; Sergeï G Denissov; Cinzia Gazziola; Marion E Lohrum; Hendrik G Stunnenberg
Targeted discovery tools: proteomics and chromatin immunoprecipitation-on-chip.
BJU international 2005;96 Suppl 2():16-22.
2005: Anil Ozdemir; Salvatore Spicuglia; Edwin Lasonder; Michiel Vermeulen; Coen Campsteijn; Hendrik G Stunnenberg; Colin Logie
Characterization of lysine 56 of histone H3 as an acetylation site in Saccharomyces cerevisiae.
The Journal of biological chemistry 2005;280(28):25949-52.
2005: Jurgen M Smeenk; Matthijs B J Otten; Jens Thies; David A Tirrell; Hendrik G Stunnenberg; Jan C M van Hest
Controlled assembly of macromolecular beta-sheet fibrils.
Angewandte Chemie (International ed. in English) 2005;44(13):1968-71.
2004: Torill Høiby; Dimitra J Mitsiou; Huiqing Zhou; Hediye Erdjument-Bromage; Paul Tempst; Hendrik G Stunnenberg
Cleavage and proteasome-mediated degradation of the basal transcription factor TFIIA.
The EMBO journal 2004;23(15):3083-91.
2004: Xavier Le Guezennec; Gert Vriend; Hendrik G Stunnenberg
Molecular determinants of the interaction of Mad with the PAH2 domain of mSin3.
The Journal of biological chemistry 2004;279(24):25823-9.
2004: Michiel Vermeulen; Michael J Carrozza; Edwin Lasonder; Jerry L Workman; Colin Logie; Hendrik G Stunnenberg
In vitro targeting reveals intrinsic histone tail specificity of the Sin3/histone deacetylase and N-CoR/SMRT corepressor complexes.
Molecular and cellular biology 2004;24(6):2364-72.
2004: Hugo van Ingen; Edwin Lasonder; Jacobus F A Jansen; Anita M Kaan; Chris A E M Spronk; Hendrik G Stunnenberg; Geerten W Vuister
Extension of the binding motif of the Sin3 interacting domain of the Mad family proteins.
Biochemistry 2004;43(1):46-54.
2003: Dimitra J Mitsiou; Hendrik G Stunnenberg
p300 is involved in formation of the TBP-TFIIA-containing basal transcription complex, TAC.
The EMBO journal 2003;22(17):4501-11.
2002: Edwin Lasonder; Yasushi Ishihama; Jens S Andersen; Adriaan M W Vermunt; Arnab Pain; Robert W Sauerwein; Wijnand Eling; Neil Hall; Andrew P Waters; Hendrik G Stunnenberg; Matthias Mann
Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry.
Nature 2002;419(6906):537-42.
2002: Torben Helledie; Lars Grøntved; Søren S Jensen; Pia Kiilerich; Luc Rietveld; Tatjana Albrektsen; Maria Sandberg Boysen; Jane Nøhr; Leif K Larsen; Jan Fleckner; Hendrik G Stunnenberg; Karsten Kristiansen; Susanne Mandrup
The gene encoding the Acyl-CoA-binding protein is activated by peroxisome proliferator-activated receptor gamma through an intronic response element functionally conserved between humans and rodents.
The Journal of biological chemistry 2002;277(30):26821-30.
2002: Benjamin Rowland; Serguei G Denissov; Sirith Douma; Hendrik G Stunnenberg; René Bernards; Daniel S Peeper
E2F transcriptional repressor complexes are critical downstream targets of p19(ARF)/p53-induced proliferative arrest.
Cancer cell 2002;2(1):55-65.
2002: Luc E G Rietveld; Eric Caldenhoven; Hendrik G Stunnenberg
In vivo repression of an erythroid-specific gene by distinct corepressor complexes.
The EMBO journal 2002;21(6):1389-97.
2001: K Gawlas; Hendrik G Stunnenberg
Differential transcription of the orphan receptor RORbeta in nuclear extracts derived from Neuro2A and HeLa cells.
Nucleic acids research 2001;29(16):3424-32.
2001: Luc E G Rietveld; Eric Caldenhoven; Hendrik G Stunnenberg
Avian erythroleukemia: a model for corepressor function in cancer.
Oncogene 2001;20(24):3100-9.
2001: Chris A E M Spronk; Jacobus F A Jansen; Marco Tessari; Anita M Kaan; Jan Aelen; Edwin Lasonder; Hendrik G Stunnenberg; Geerten W Vuister
Sequence-specific assignment of the PAH2 domain of Sin3B free and bound to Mad1.
Journal of biomolecular NMR 2001;19(4):377-8.
2001: Georgia G Braliou; P Ciana; W Klaassen; O Gandrillon; Hendrik G Stunnenberg
The v-ErbA oncoprotein quenches the activity of an erythroid-specific enhancer.
Oncogene 2001;20(7):775-87.
2001: Melissa R van Dijk; Chris J Janse; J Thompson; Andrew P Waters; Joanna A M Braks; H J Dodemont; Hendrik G Stunnenberg; Geert-Jan van Gemert; Robert W Sauerwein; Wijnand Eling
A central role for P48/45 in malaria parasite male gamete fertility.
Cell 2001;104(1):153-64.
2000: K Gawlas; Hendrik G Stunnenberg
Differential binding and transcriptional behaviour of two highly related orphan receptors, ROR alpha(4) and ROR beta(1).
Biochimica et biophysica acta 2000;1494(3):236-41.
2000: Chris A E M Spronk; Marco Tessari; Anita M Kaan; Jacobus F A Jansen; M Vermeulen; Hendrik G Stunnenberg; Geerten W Vuister
The Mad1-Sin3B interaction involves a novel helical fold.
Nature structural biology 2000;7(12):1100-4.
2000: Dimitra J Mitsiou; Hendrik G Stunnenberg
TAC, a TBP-sans-TAFs complex containing the unprocessed TFIIAalphabeta precursor and the TFIIAgamma subunit.
Molecular cell 2000;6(3):527-37.
2000: RL Milek; Hendrik G Stunnenberg; RN Konings
Assembly and expression of a synthetic gene encoding the antigen Pfs48/45 of the human malaria parasite Plasmodium falciparum in yeast.
Vaccine 2000;18(14):1402-11.
1999: Koen J Dechering; Anita M Kaan; WF Mbacham; Dyann F Wirth; Wijnand Eling; RN Konings; Hendrik G Stunnenberg
Isolation and functional characterization of two distinct sexual-stage-specific promoters of the human malaria parasite Plasmodium falciparum.
Molecular and cellular biology 1999;19(2):967-78.
1999: Hendrik G Stunnenberg; C Garcia-Jimenez; Joan L Betz
Leukemia: the sophisticated subversion of hematopoiesis by nuclear receptor oncoproteins.
Biochimica et biophysica acta 1999;1423(1):F15-33.
1998: P Ciana; Georgia G Braliou; F G Demay; M von Lindern; D Barettino; H Beug; Hendrik G Stunnenberg
Leukemic transformation by the v-ErbA oncoprotein entails constitutive binding to and repression of an erythroid enhancer in vivo.
The EMBO journal 1998;17(24):7382-94.
1998: RL Milek; A A DeVries; Will Roeffen; Hendrik G Stunnenberg; P J Rottier; RN Konings
Plasmodium falciparum: heterologous synthesis of the transmission-blocking vaccine candidate Pfs48/45 in recombinant vaccinia virus-infected cells.
Experimental parasitology 1998;90(2):165-74.
1997: M V Sanguedolce; B P Leblanc; Joan L Betz; Hendrik G Stunnenberg
The promoter context is a decisive factor in establishing selective responsiveness to nuclear class II receptors.
The EMBO journal 1997;16(10):2861-73.
1997: R Valcárcel; M Meyer; M Meisterernst; Hendrik G Stunnenberg
Requirement of cofactors for RXR/RAR-mediated transcriptional activation in vitro.
Biochimica et biophysica acta 1997;1350(3):229-34.
1996: M Meyer; V Sonntag-Buck; M Keaveney; Hendrik G Stunnenberg
Retinoid-dependent transcription: the RAR/RXR-TBP-EIA/EIA-LA connection.
Biochemical Society symposium 1996;62():97-109.
1996: R Valcárcel; Hendrik G Stunnenberg
Retinoid-dependent in vitro transcription.
Methods in enzymology 1996;274():149-61.
1995: B P Leblanc; Hendrik G Stunnenberg
9-cis retinoic acid signaling: changing partners causes some excitement.
Genes & development 1995;9(15):1811-6.
1995: A Reikerstorfer; H Holz; Hendrik G Stunnenberg; Meinrad Busslinger
Low affinity binding of interleukin-1 beta and intracellular signaling via NF-kappa B identify Fit-1 as a distant member of the interleukin-1 receptor family.
The Journal of biological chemistry 1995;270(30):17645-8.
1995: G Hateboer; A Gennissen; Y F Ramos; Ron Kerkhoven; V Sonntag-Buck; Hendrik G Stunnenberg; René Bernards
BS69, a novel adenovirus E1A-associated protein that inhibits E1A transactivation.
The EMBO journal 1995;14(13):3159-69.
1994: R Valcárcel; H Holz; C G Jiménez; D Barettino; Hendrik G Stunnenberg
Retinoid-dependent in vitro transcription mediated by the RXR/RAR heterodimer.
Genes & development 1994;8(24):3068-79.
1994: U Rudloff; Hendrik G Stunnenberg; M Keaveney; Ingrid Grummt
Yeast TBP can replace its human homologue in the RNA polymerase I-specific multisubunit factor SL1.
Journal of molecular biology 1994;243(5):840-5.
1994: D Barettino; M M Vivanco Ruiz; Hendrik G Stunnenberg
Characterization of the ligand-dependent transactivation domain of thyroid hormone receptor.
The EMBO journal 1994;13(13):3039-49.
1994: U Rudloff; D Eberhard; Làszlò Tora; Hendrik G Stunnenberg; Ingrid Grummt
TBP-associated factors interact with DNA and govern species specificity of RNA polymerase I transcription.
The EMBO journal 1994;13(11):2611-6.
1994: D Barettino; M Feigenbutz; R Valcárcel; Hendrik G Stunnenberg
Improved method for PCR-mediated site-directed mutagenesis.
Nucleic acids research 1994;22(3):541-2.
1993: M Keaveney; A Berkenstam; M Feigenbutz; G Vriend; Hendrik G Stunnenberg
Residues in the TATA-binding protein required to mediate a transcriptional response to retinoic acid in EC cells.
Nature 1993;365(6446):562-6.
1993: J Schmitt; Hendrik G Stunnenberg
The glucocorticoid receptor hormone binding domain mediates transcriptional activation in vitro in the absence of ligand.
Nucleic acids research 1993;21(11):2673-81.
1993: H E Thomas; Hendrik G Stunnenberg; A F Stewart
Heterodimerization of the Drosophila ecdysone receptor with retinoid X receptor and ultraspiracle.
Nature 1993;362(6419):471-5.
1993: D Barettino; T H Bugge; Petr Bartunek; M D Vivanco Ruiz; V Sonntag-Buck; Hartmut Beug; Martin Zenke; Hendrik G Stunnenberg
Unliganded T3R, but not its oncogenic variant, v-erbA, suppresses RAR-dependent transactivation by titrating out RXR.
The EMBO journal 1993;12(4):1343-54.
1992: C Bucci; Robert Parton; Ian H. Mather; Hendrik G Stunnenberg; Kai Simons; Bernard Hoflack; Marino Zerial
The small GTPase rab5 functions as a regulatory factor in the early endocytic pathway.
Cell 1992;70(5):715-28.
1992: Renate Voit; Andreas Schnapp; A Kuhn; H Rosenbauer; P Hirschmann; Hendrik G Stunnenberg; Ingrid Grummt
The nucleolar transcription factor mUBF is phosphorylated by casein kinase II in the C-terminal hyperacidic tail which is essential for transactivation.
The EMBO journal 1992;11(6):2211-8.
1992: A Berkenstam; M M Ruiz; D Barettino; M Horikoshi; Hendrik G Stunnenberg
Cooperativity in transactivation between retinoic acid receptor and TFIID requires an activity analogous to E1A.
Cell 1992;69(3):401-12.
1992: T H Bugge; J Pohl; O Lonnoy; Hendrik G Stunnenberg
RXR alpha, a promiscuous partner of retinoic acid and thyroid hormone receptors.
The EMBO journal 1992;11(4):1409-18.
1991: M M Vivanco Ruiz; T H Bugge; P Hirschmann; Hendrik G Stunnenberg
Functional characterization of a natural retinoic acid responsive element.
The EMBO journal 1991;10(12):3829-38.
1991: C Disela; C Glineur; T Bugge; J Sap; G Stengl; J Dodgson; Hendrik G Stunnenberg; Hartmut Beug; Martin Zenke
v-erbA overexpression is required to extinguish c-erbA function in erythroid cell differentiation and regulation of the erbA target gene CAII.
Genes & development 1991;5(11):2033-47.
1991: J C Vos; M Sasker; Hendrik G Stunnenberg
Vaccinia virus capping enzyme is a transcription initiation factor.
The EMBO journal 1991;10(9):2553-8.
1991: K A Simmen; J Bernués; H D Parry; Hendrik G Stunnenberg; A Berkenstam; B Cavallini; J M Egly; Iain W Mattaj
TFIID is required for in vitro transcription of the human U6 gene by RNA polymerase III.
The EMBO journal 1991;10(7):1853-62.
1991: J C Vos; M Sasker; Hendrik G Stunnenberg
Promoter melting by a stage-specific vaccinia virus transcription factor is independent of the presence of RNA polymerase.
Cell 1991;65(1):105-13.
1990: P Hirschmann; J C Vos; Hendrik G Stunnenberg
Mutational analysis of a vaccinia virus intermediate promoter in vivo and in vitro.
Journal of virology 1990;64(12):6063-9.
1990: Alfredo Nicosia; Paolo MONACI; Licia tomei; Raffaele De Francesco; M Nuzzo; Hendrik G Stunnenberg; Riccardo Cortese
A myosin-like dimerization helix and an extra-large homeodomain are essential elements of the tripartite DNA binding structure of LFB1.
Cell 1990;61(7):1225-36.
1990: J Sap; L de Magistris; Hendrik G Stunnenberg; Björn Vennström
A major thyroid hormone response element in the third intron of the rat growth hormone gene.
The EMBO journal 1990;9(3):887-96.
1990: Fotini Gounari; Raffaele De Francesco; J Schmitt; Peter C van der Vliet; Riccardo Cortese; Hendrik G Stunnenberg
Amino-terminal domain of NF1 binds to DNA as a dimer and activates adenovirus DNA replication.
The EMBO journal 1990;9(2):559-66.
1990: H de Thé; M M Vivanco-Ruiz; Pierre Tiollais; Hendrik G Stunnenberg; Anne Dejean
Identification of a retinoic acid responsive element in the retinoic acid receptor beta gene.
Nature 1990;343(6254):177-80.
1989: Wolfgang Schmid; U Strähle; Günther Schütz; J Schmitt; Hendrik G Stunnenberg
Glucocorticoid receptor binds cooperatively to adjacent recognition sites.
The EMBO journal 1989;8(8):2257-63.
1989: J Sap; A Muñoz; J Schmitt; Hendrik G Stunnenberg; Björn Vennström
Repression of transcription mediated at a thyroid hormone response element by the v-erb-A oncogene product.
Nature 1989;340(6230):242-4.
1988: J C Vos; Hendrik G Stunnenberg
Derepression of a novel class of vaccinia virus genes upon DNA replication.
The EMBO journal 1988;7(11):3487-92.
1988: J F Schmitt; Hendrik G Stunnenberg
Sequence and transcriptional analysis of the vaccinia virus HindIII I fragment.
Journal of virology 1988;62(6):1889-97.
1988: L de Magistris; Hendrik G Stunnenberg
Cis-acting sequences affecting the length of the poly(A) head of vaccinia virus late transcripts.
Nucleic acids research 1988;16(8):3141-56.
1988: B Schwer; Hendrik G Stunnenberg
Vaccinia virus late transcripts generated in vitro have a poly(A) head.
The EMBO journal 1988;7(4):1183-90.
1988: Hendrik G Stunnenberg; H Lange; L Philipson; R T van Miltenburg; Peter C van der Vliet
High expression of functional adenovirus DNA polymerase and precursor terminal protein using recombinant vaccinia virus.
Nucleic acids research 1988;16(6):2431-44.
1987: B Schwer; P Visca; J C Vos; Hendrik G Stunnenberg
Discontinuous transcription or RNA processing of vaccinia virus late messengers results in a 5' poly(A) leader.
Cell 1987;50(2):163-9.