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Charles Sugnet

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Andy Pohl; Charles W Sugnet; Tyson A Clark; Kayla Smith; Pauline A Fujita; Melissa S Cline
Affy exon tissues: exon levels in normal tissues in human, mouse and rat.
Robert M Kuhn; Donna Karolchik; Ann S Zweig; Heather Trumbower; Daryl J Thomas; A Thakkapallayil; Charles W Sugnet; M Stanke; Kayla E Smith; Adam Siepel; Kate Rosenbloom; Brooke L Rhead; Brian J Raney; Andy Pohl; Jan Skov Pedersen; Fan Hsu; Angie S Hinrichs; Rachel A Harte; Mark Diekhans; Hiram Clawson; Gill Bejerano; Galt P Barber; Robert Baertsch; David Haussler; W James Kent
The UCSC genome browser database: update 2007.
Charles W Sugnet; Karpagam Srinivasan; Tyson A Clark; Georgeann O'Brien; Melissa Cline; Hui Wang; Alan Williams; David Kulp; John E Blume; David Haussler; Manuel Ares
Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

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All Publications

2009: Andy Pohl; Charles W Sugnet; Tyson A Clark; Kayla Smith; Pauline A Fujita; Melissa S Cline
Affy exon tissues: exon levels in normal tissues in human, mouse and rat.
Bioinformatics (Oxford, England) 2009;25(18):2442-3.
2007: Robert M Kuhn; Donna Karolchik; Ann S Zweig; Heather Trumbower; Daryl J Thomas; A Thakkapallayil; Charles W Sugnet; M Stanke; Kayla E Smith; Adam Siepel; Kate Rosenbloom; Brooke L Rhead; Brian J Raney; Andy Pohl; Jan Skov Pedersen; Fan Hsu; Angie S Hinrichs; Rachel A Harte; Mark Diekhans; Hiram Clawson; Gill Bejerano; Galt P Barber; Robert Baertsch; David Haussler; W James Kent
The UCSC genome browser database: update 2007.
Nucleic acids research 2007;35(Database issue):D668-73.
2006: Charles W Sugnet; Karpagam Srinivasan; Tyson A Clark; Georgeann O'Brien; Melissa Cline; Hui Wang; Alan Williams; David Kulp; John E Blume; David Haussler; Manuel Ares
Unusual intron conservation near tissue-regulated exons found by splicing microarrays.
PLoS computational biology 2006;2(1):e4.
2006: Angie S Hinrichs; Donna Karolchik; Robert Baertsch; Galt P Barber; Gill Bejerano; Hiram Clawson; Mark Diekhans; Terrence S Furey; Rachel A Harte; Fan Hsu; J Hillman-Jackson; Robert M Kuhn; Jan Skov Pedersen; Andy Pohl; Brian J Raney; Kate Rosenbloom; Adam Siepel; Kayla E Smith; Charles W Sugnet; A Sultan-Qurraie; Daryl J Thomas; Heather Trumbower; RJ Weber; M Weirauch; Ann S Zweig; David Haussler; W James Kent
The UCSC Genome Browser Database: update 2006.
Nucleic acids research 2006;34(Database issue):D590-8.
2005: Karpagam Srinivasan; Lily Shiue; Justin D Hayes; Ross Centers; Sean Patrick Fitzwater; Rebecca Loewen; Lillian R Edmondson; Jessica Bryant; Michael Smith; Claire Rommelfanger; Valerie Welch; Tyson A Clark; Charles W Sugnet; Kenneth James Howe; Yael Mandel-Gutfreund; Manuel Ares
Detection and measurement of alternative splicing using splicing-sensitive microarrays.
Methods (San Diego, Calif.) 2005;37(4):345-59.
2004: Charles W Sugnet; W James Kent; Manuel Ares; David Haussler
Transcriptome and genome conservation of alternative splicing events in humans and mice.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2004;():66-77.
2004: Donna Karolchik; Angie S Hinrichs; Terrence S Furey; Krishna M Roskin; Charles W Sugnet; David Haussler; W James Kent
The UCSC Table Browser data retrieval tool.
Nucleic acids research 2004;32(Database issue):D493-6.
2003: Donna Karolchik; Robert Baertsch; Mark Diekhans; Terrence S Furey; Angie S Hinrichs; Y T Lu; Krishna M Roskin; M Schwartz; Charles W Sugnet; Daryl J Thomas; RJ Weber; David Haussler; W James Kent
The UCSC Genome Browser Database.
Nucleic acids research 2003;31(1):51-4.
2002: W James Kent; Charles W Sugnet; Terrence S Furey; Krishna M Roskin; Tom H Pringle; Alan M Zahler; David Haussler
The human genome browser at UCSC.
Genome research 2002;12(6):996-1006.
2002: Tyson A Clark; Charles W Sugnet; Manuel Ares
Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays.
Science (New York, N.Y.) 2002;296(5569):907-10.
2002: C Geoffrey Burns; Ryoma Ohi; Sapna Mehta; Eileen T O'Toole; Mark Winey; Tyson A Clark; Charles W Sugnet; Manuel Ares; Kathleen L Gould
Removal of a single alpha-tubulin gene intron suppresses cell cycle arrest phenotypes of splicing factor mutations in Saccharomyces cerevisiae.
Molecular and cellular biology 2002;22(3):801-15.
2001: Michael Lewis; S Ross; Phyllis Strickland; Charles W Sugnet; E Jimenez; C Hui; Charles W Daniel
The Gli2 transcription factor is required for normal mouse mammary gland development.
Developmental biology 2001;238(1):133-44.
2000: M P Brown; WN Grundy; D Lin; N Cristianini; Charles W Sugnet; Terrence S Furey; Manuel Ares; David Haussler
Knowledge-based analysis of microarray gene expression data by using support vector machines.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(1):262-7.
1999: Michael Lewis; S Ross; Phyllis Strickland; Charles W Sugnet; E Jimenez; Matthew P Scott; Charles W Daniel
Defects in mouse mammary gland development caused by conditional haploinsufficiency of Patched-1.
Development (Cambridge, England) 1999;126(22):5181-93.