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Qi Sun

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TOP 3
Pajau Vangay; Eric B Fugett; Qi Sun; Martin Wiedmann
Food microbe tracker: a web-based tool for storage and comparison of food-associated microbes.
Mingshu Huang; Wojciech Majeran; Kenji Nishimura; Paul Dominic B Olinares; Xian Qu; Qi Sun; Giulia Friso; Klaas J van Wijk
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
Changyou Lin; Lalit Ponnala; Michael J Stanhope; Qi Sun; Haruo Suzuki; Martin Wiedmann; Henk C den Bakker; Tristan Lefébure; Gérald E Duhamel
Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.).

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All Publications

2013: Pajau Vangay; Eric B Fugett; Qi Sun; Martin Wiedmann
Food microbe tracker: a web-based tool for storage and comparison of food-associated microbes.
Journal of food protection 2013;76(2):283-94.
2013: Mingshu Huang; Wojciech Majeran; Kenji Nishimura; Paul Dominic B Olinares; Xian Qu; Qi Sun; Giulia Friso; Klaas J van Wijk
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
Journal of proteome research 2013;12(1):491-504.
2013: Changyou Lin; Lalit Ponnala; Michael J Stanhope; Qi Sun; Haruo Suzuki; Martin Wiedmann; Henk C den Bakker; Tristan Lefébure; Gérald E Duhamel
Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78(T.).
Genome announcements 2013;1(1):.
2012: Elizabeth M Takacs; Marja C P Timmermans; Jianming Yu; Patrick S Schnable; Qi Sun; Chuanlong Du; Diane Janick-Buckner; Jie Li; Gary J Muehlbauer; Dan Nettleton; Lalit Ponnala; Michael J Scanlon
Ontogeny of the maize shoot apical meristem.
The Plant cell 2012;24(8):3219-34.
2012: Peter K Lundquist; Anton Poliakov; Qi Sun; Nazmul H Bhuiyan; Boris Zybailov; Klaas J van Wijk
The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
Plant physiology 2012;158(3):1172-92.
2011: Anna V Kukekova; Lewyn Li; Irina N Oskina; Ravee Padte; Lalit Ponnala; Darya V Shepeleva; Svetlana G Shikhevich; Qi Sun; Clotilde Teiling; Svetlana V Temnykh; Lyudmila N Trut; Anastasiya V Vladimirova; Michael M Dubreuil; RG Gulevich; Jennifer L Johnson; Anastasiya V Kharlamova; Gregory M Acland
Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes).
BMC genomics 2011;12():482.
2011: Robert J Elshire; Jeffrey C Glaubitz; Qi Sun; Jesse A Poland; Ken Kawamoto; Edward S Buckler; Sharon E Mitchell
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species.
PloS one 2011;6(5):e19379.
2010: Wojciech Majeran; Giulia Friso; Lalit Ponnala; Brian Connolly; Mingshu Huang; Edwin Reidel; Cankui Zhang; Yukari Asakura; Nazmul H Bhuiyan; Qi Sun; Robert Turgeon; Klaas J van Wijk
Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.
The Plant cell 2010;22(11):3509-42.
2010: Giulia Friso; Wojciech Majeran; Mingshu Huang; Qi Sun; Klaas J van Wijk
Reconstruction of metabolic pathways, protein expression, and homeostasis machineries across maize bundle sheath and mesophyll chloroplasts: large-scale quantitative proteomics using the first maize genome assembly.
Plant physiology 2010;152(3):1219-50.
2009: Boris Zybailov; Qi Sun; Klaas J van Wijk
Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library.
Analytical chemistry 2009;81(19):8015-24.
2009: Alejandro Zamora; Qi Sun; Martha Hamblin; Charles F Aquadro; Stephen Kresovich
Positively selected disease response orthologous gene sets in the cereals identified using Sorghum bicolor L. Moench expression profiles and comparative genomics.
Molecular biology and evolution 2009;26(9):2015-30.
2009: Boris Zybailov; Giulia Friso; Jitae Kim; Andrea Rudella; Verenice Ramírez Rodríguez; Yukari Asakura; Qi Sun; Klaas J van Wijk
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.
Molecular & cellular proteomics : MCP 2009;8(8):1789-1810.
2009: Haley F Oliver; Renato H Orsi; Lalit Ponnala; Uri Keich; Wei Wang; Qi Sun; Samuel W Cartinhour; Melanie J Filiatrault; Martin Wiedmann; Kathryn J Boor
Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs.
BMC genomics 2009;10():641.
2009: Yeşim Soyer; Renato H Orsi; Lorraine D Rodriguez-Rivera; Qi Sun; Martin Wiedmann
Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes.
BMC evolutionary biology 2009;9():264.
2008: Jian-Hong Zhu; Xiaomei Zhang; Carol A Roneker; James P McClung; Sheng Zhang; TW Thannhauser; Daniel R Ripoll; Qi Sun; Xin Gen Lei
Role of copper,zinc-superoxide dismutase in catalyzing nitrotyrosine formation in murine liver.
Free radical biology & medicine 2008;45(5):611-8.
2008: Wojciech Majeran; Boris Zybailov; A Jimmy Ytterberg; Jason Dunsmore; Qi Sun; Klaas J van Wijk
Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.
Molecular & cellular proteomics : MCP 2008;7(9):1609-38.
2008: Renato H Orsi; Mark L Borowsky; Peter Lauer; Sarah K Young; Chad Nusbaum; James E Galagan; Bruce W Birren; Reid A Ivy; Qi Sun; Lewis M Graves; Bala Swaminathan; Martin Wiedmann
Short-term genome evolution of Listeria monocytogenes in a non-controlled environment.
BMC genomics 2008;9():539.
2008: Renato H Orsi; Qi Sun; Martin Wiedmann
Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes.
BMC evolutionary biology 2008;8():233.
2008: Boris Zybailov; Heidi Rutschow; Giulia Friso; Andrea Rudella; Olof Emanuelsson; Qi Sun; Klaas J van Wijk
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
PloS one 2008;3(4):e1994.
2008: Tae-Sung Kim; James G Booth; Hugh G Gauch; Qi Sun; Jongsun Park; Yong-Hwan Lee; Kwangwon Lee
Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference.
BMC genomics 2008;9():31.
2006: Ju-Kyung Yu; Qi Sun; Mauricio La Rota; Hugh Edwards; Hailu Tefera; Mark E Sorrells
Expressed sequence tag analysis in tef (Eragrostis tef (Zucc) Trotter).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2006;49(4):365-72.
2006: Shuhua Yang; Huijun Yang; Paula Grisafi; Siraprapha Sanchatjate; Gerald R Fink; Qi Sun; Jian Hua
The BON/CPN gene family represses cell death and promotes cell growth in Arabidopsis.
The Plant journal : for cell and molecular biology 2006;45(2):166-79.
2006: Jean-Benoit Peltier; Yang Cai; Qi Sun; Vlad Zabrouskov; Lisa Giacomelli; Andrea Rudella; A Jimmy Ytterberg; Heidi Rutschow; Klaas J van Wijk
The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.
Molecular & cellular proteomics : MCP 2006;5(1):114-33.
2005: Wojciech Majeran; Yang Cai; Qi Sun; Klaas J van Wijk
Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics.
The Plant cell 2005;17(11):3111-40.
2005: Hong-Bo Xin; Ke-Yu Deng; Bo Shui; Shimian Qu; Qi Sun; Jane Lee; Kai Su Greene; Jason Wilson; Ying Yu; Morris Feldman; Michael I Kotlikoff
Gene trap and gene inversion methods for conditional gene inactivation in the mouse.
Nucleic acids research 2005;33(2):e14.
2004: Jean-Benoit Peltier; A Jimmy Ytterberg; Qi Sun; Klaas J van Wijk
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.
The Journal of biological chemistry 2004;279(47):49367-83.
2004: Giulia Friso; Lisa Giacomelli; A Jimmy Ytterberg; Jean-Benoit Peltier; Andrea Rudella; Qi Sun; Klaas J van Wijk
In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database.
The Plant cell 2004;16(2):478-99.