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Mikita Suyama

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Evolution, Molecular

Genes & Molecular Sequences

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Chanavee Ratanajaraya; Ryoichi Saito; Mikita Suyama; Meiko Takahashi; Ryo Yamada; Takahisa Kawaguchi; Mark Lathrop; Yoshiki Mikami; Hiroyuki Nishiyama; Osamu Ogawa; Fumihiko MATSUDA
A polymorphism of the POLG2 gene is genetically associated with the invasiveness of urinary bladder cancer in Japanese males.
Mikita Suyama; Eoghan D Harrington; Svetlana Vinokourova; Magnus von Knebel Doeberitz; Osamu Ohara; Peer Bork
A network of conserved co-occurring motifs for the regulation of alternative splicing.
Marc Güell; Vera van Noort; Eva Yus; Wei-Hua Chen; Justine Leigh-Bell; Konstantinos Michalodimitrakis; Takuji Yamada; Manimozhiyan Arumugam; Tobias Doerks; Sebastian Kühner; Michaela Rode; Mikita Suyama; Sabine Schmidt; Anne-Claude Gavin; Peer Bork; Luis Serrano
Transcriptome complexity in a genome-reduced bacterium.

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All Publications

2011: Chanavee Ratanajaraya; Ryoichi Saito; Mikita Suyama; Meiko Takahashi; Ryo Yamada; Takahisa Kawaguchi; Mark Lathrop; Yoshiki Mikami; Hiroyuki Nishiyama; Osamu Ogawa; Fumihiko MATSUDA
A polymorphism of the POLG2 gene is genetically associated with the invasiveness of urinary bladder cancer in Japanese males.
Journal of human genetics 2011;56(8):572-6.
2010: Mikita Suyama; Eoghan D Harrington; Svetlana Vinokourova; Magnus von Knebel Doeberitz; Osamu Ohara; Peer Bork
A network of conserved co-occurring motifs for the regulation of alternative splicing.
Nucleic acids research 2010;38(22):7916-26.
2009: Marc Güell; Vera van Noort; Eva Yus; Wei-Hua Chen; Justine Leigh-Bell; Konstantinos Michalodimitrakis; Takuji Yamada; Manimozhiyan Arumugam; Tobias Doerks; Sebastian Kühner; Michaela Rode; Mikita Suyama; Sabine Schmidt; Anne-Claude Gavin; Peer Bork; Luis Serrano
Transcriptome complexity in a genome-reduced bacterium.
Science (New York, N.Y.) 2009;326(5957):1268-71.
2009: Junji Itou; Mikita Suyama; Yukio Imamura; Tomonori Deguchi; Kazuhiro Fujimori; Shunsuke Yuba; Yutaka Kawarabayasi; Takashi Kawasaki
Functional and comparative genomics analyses of pmp22 in medaka fish.
BMC neuroscience 2009;10():60.
2008: Carlos Quijano; Pavel Tomancak; Jesus Lopez-Marti; Mikita Suyama; Peer Bork; Marco Milan; David Torrents; Miguel Manzanares
Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution.
Genome biology 2008;9(12):R176.
2008: Giulia Soldà; Mikita Suyama; Paride Pelucchi; Silvia Boi; Alessandro Guffanti; Ermanno Rizzi; Peer Bork; Maria Luisa Tenchini; Francesca D Ciccarelli
Non-random retention of protein-coding overlapping genes in Metazoa.
BMC genomics 2008;9():174.
2006: Mikita Suyama; David Torrents; Peer Bork
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
Nucleic acids research 2006;34(Web Server issue):W609-12.
2006: Mikita Suyama; Eoghan D Harrington; Peer Bork; David Torrents
Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.
PLoS computational biology 2006;2(6):e76.
2006: Atsushi Kobayashi; Takashi Tonozuka; Kimihiko Sato; Mikita Suyama; Jun Sasaki; Batbold Nyamdawaa; Masayoshi Sakaguchi; Yoshiyuki Sakano
Molecular cloning and characterization of an enzyme hydrolyzing p-nitrophenyl alpha-D-glucoside from Bacillus stearothermophilus SA0301.
Bioscience, biotechnology, and biochemistry 2006;70(2):495-9.
2005: Mikita Suyama; warren lathe; Peer Bork
Palindromic repetitive DNA elements with coding potential in Methanocaldococcus jannaschii.
FEBS letters 2005;579(24):5281-6.
2005: Francesca D Ciccarelli; Christian von Mering; Mikita Suyama; Eoghan D Harrington; Elisa Izaurralde; Peer Bork
Complex genomic rearrangements lead to novel primate gene function.
Genome research 2005;15(3):343-51.
2004: Mikita Suyama; David Torrents; Peer Bork
BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments.
Bioinformatics (Oxford, England) 2004;20(12):1968-70.
2004: Mikita Suyama
[Genome database].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(11 Suppl):1841-6.
2003: David Torrents; Mikita Suyama; Evgeny M Zdobnov; Peer Bork
A genome-wide survey of human pseudogenes.
Genome research 2003;13(12):2559-67.
2003: Mikita Suyama; Osamu Ohara
DomCut: prediction of inter-domain linker regions in amino acid sequences.
Bioinformatics (Oxford, England) 2003;19(5):673-4.
2003: Robert H Waterston; LaDeana W Hillier; Lucinda Fulton; Robert S Fulton; Tina Graves; Kymberlie H Pepin; Peer Bork; Mikita Suyama; David Torrents; Asif T Chinwalla; Elaine R Mardis; John D McPherson; Richard K Wilson
The human genome: genes, pseudogenes, and variation on chromosome 7.
Cold Spring Harbor symposia on quantitative biology 2003;68():13-22.
2000: Andrea Herold; Mikita Suyama; João Pedro Rodrigues; Isabelle C Braun; Ulrike Kutay; Maria Carmo-Fonseca; Peer Bork; Elisa Izaurralde
TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture.
Molecular and cellular biology 2000;20(23):8996-9008.
2000: Thomas Dandekar; M Huynen; JT Regula; Barbara Ueberle; C U Zimmermann; Miguel Andrade; Tobias Doerks; Luis Sánchez-Pulido; Berend Snel; Mikita Suyama; Y P Yuan; R Herrmann; Peer Bork
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.
Nucleic acids research 2000;28(17):3278-88.
2000: Mikita Suyama; Tobias Doerks; Isabelle C Braun; M Sattler; Elisa Izaurralde; Peer Bork
Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins.
EMBO reports 2000;1(1):53-8.