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Tsutomu Suzuki

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Escherichia coli

Anatomy

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Amino Acid Sequence

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Co-Publications
Name
28
Watanabe, Kimitsuna
11
Suzuki, Takeo
11
Ikeuchi, Yoshiho
7
Kirino, Yohei
7
Yasukawa, Takehiro
7
Nureki, Osamu
5
Ohtsuki, Takashi
5
Noma, Akiko
4
Miyauchi, Kenjyo
4
Fukai, Shuya
4
Sato, Neuza Satomi
4
Ueda, Takuya
4
SHIGI, Naoki
4
Ohta, Shigeo
3
Sawaguchi, Toshiko

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Publications

TOP 3
Nagao Asuteka; Suzuki Takeo; Katoh Takayuki; Sakaguchi Yuriko; Suzuki Tsutomu
Biogenesis of glutaminyl-mt tRNAGln in human mitochondria.
Umitsu Masataka; Nishimasu Hiroshi; Noma Akiko; Suzuki Tsutomu; Ishitani Ryuichiro; Nureki Osamu
Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2.
Kitahara Kei; Suzuki Tsutomu
The ordered transcription of RNA domains is not essential for ribosome biogenesis in Escherichia coli.

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All Publications

2009: Nagao Asuteka; Suzuki Takeo; Katoh Takayuki; Sakaguchi Yuriko; Suzuki Tsutomu
Biogenesis of glutaminyl-mt tRNAGln in human mitochondria.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(38):16209-14.
2009: Umitsu Masataka; Nishimasu Hiroshi; Noma Akiko; Suzuki Tsutomu; Ishitani Ryuichiro; Nureki Osamu
Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(37):15616-21.
2009: Kitahara Kei; Suzuki Tsutomu
The ordered transcription of RNA domains is not essential for ribosome biogenesis in Escherichia coli.
Molecular cell 2009;34(6):760-6.
2009: Chimnaronk Sarin; Suzuki Tateki; Manita Tetsuhiro; Ikeuchi Yoshiho; Yao Min; Suzuki Tsutomu; Tanaka Isao
RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon.
The EMBO journal 2009;28(9):1362-73.
2009: Suzuki Yoko; Noma Akiko; Suzuki Tsutomu; Ishitani Ryuichiro; Nureki Osamu
Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4.
Nucleic acids research 2009;37(9):2910-25.
2009: Noma Akiko; Sakaguchi Yuriko; Suzuki Tsutomu
Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.
Nucleic acids research 2009;37(4):1335-52.
2009: Katoh Takayuki; Sakaguchi Yuriko; Miyauchi Kenjyo; Suzuki Takeo; Kashiwabara Shin-Ichi; Baba Tadashi; Suzuki Tsutomu
Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.
Genes & development 2009;23(4):433-8.
2009: Ohira Takayuki; Miyauchi Kenjyo; Sakaguchi Yuriko; Suzuki Takeo; Suzuki Tsutomu
Precise analysis of modification status at various stage of tRNA maturation in Saccharomyces cerevisiae.
Nucleic acids symposium series (2004) 2009;(53):301-2.
2008: Ikeuchi Yoshiho; Kitahara Kei; Suzuki Tsutomu
The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon.
The EMBO journal 2008;27(16):2194-203.
2008: Kurata Shinya; Weixlbaumer Albert; Ohtsuki Takashi; Shimazaki Tomomi; Wada Takeshi; Kirino Yohei; Takai Kazuyuki; Watanabe Kimitsuna; Ramakrishnan V; Suzuki Tsutomu
Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.
The Journal of biological chemistry 2008;283(27):18801-11.
2008: Yokoyama Takeshi; Suzuki Tsutomu
Ribosomal RNAs are tolerant toward genetic insertions: evolutionary origin of the expansion segments.
Nucleic acids research 2008;36(11):3539-51.
2008: Nagao Asuteka; Hino-Shigi Narumi; Suzuki Tsutomu
Measuring mRNA decay in human mitochondria.
Methods in enzymology 2008;447():489-99.
2007: Suzuki Yoko; Noma Akiko; Suzuki Tsutomu; Senda Miki; Senda Toshiya; Ishitani Ryuichiro; Nureki Osamu
Crystal structure of the radical SAM enzyme catalyzing tricyclic modified base formation in tRNA.
Journal of molecular biology 2007;372(5):1204-14.
2007: Mori Tomohisa; Ito Shinobu; Kita Taizo; Narita Minoru; Suzuki Tsutomu; Matsubayashi Kenji; Sawaguchi Toshiko
Oxidative stress in methamphetamine-induced self-injurious behavior in mice.
Behavioural pharmacology 2007;18(3):239-49.
2007: Ohara Tomoya; Sakaguchi Yuriko; Suzuki Takeo; Ueda Hiroki; Miyauchi Kenjyo; Suzuki Tsutomu
The 3' termini of mouse Piwi-interacting RNAs are 2'-O-methylated.
Nature structural & molecular biology 2007;14(4):349-50.
2007: Yokoyama Takeshi; Suzuki Tsutomu
Ligand-induced translation by the allosteric ribosome bearing an aptamer-fused rRNA.
Nucleic acids symposium series (2004) 2007;(51):383-4.
2007: Nagao Asuteka; Suzuki Takeo; Suzuki Tsutomu
Aminoacyl-tRNA surveillance by EF-Tu in mammalian mitochondria.
Nucleic acids symposium series (2004) 2007;(51):41-2.
2007: Suzuki Takeo; Suzuki Tsutomu
Chaplet column chromatography: isolation of a large set of individual RNAs in a single step.
Methods in enzymology 2007;425():231-9.
2007: Suzuki Tsutomu; Ikeuchi Yoshiho; Noma Akiko; Suzuki Takeo; Sakaguchi Yuriko
Mass spectrometric identification and characterization of RNA-modifying enzymes.
Methods in enzymology 2007;425():211-29.
2007: Kitahara Kei; Kajiura Akimasa; Sato Neuza Satomi; Suzuki Tsutomu
Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2.
Nucleic acids research 2007;35(12):4018-29.
2007: Katoh Takayuki; Suzuki Tsutomu
Specific residues at every third position of siRNA shape its efficient RNAi activity.
Nucleic acids research 2007;35(4):e27.
2007: Miyauchi Kenjyo; Ohara Tomoya; Suzuki Tsutomu
Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method.
Nucleic acids research 2007;35(4):e24.
2006: Sato Neuza Satomi; Hirabayashi Naomi; Agmon Ilana; Yonath Ada; Suzuki Tsutomu
Comprehensive genetic selection revealed essential bases in the peptidyl-transferase center.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(42):15386-91.
2006: Komoda Taeko; Sato Neuza S; Phelps Steven S; Namba Naoki; Joseph Simpson; Suzuki Tsutomu
The A-site finger in 23 S rRNA acts as a functional attenuator for translocation.
The Journal of biological chemistry 2006;281(43):32303-9.
2006: Sato Aya; Watanabe Yoh-ichi; Suzuki Tsutomu; Komiyama Makoto; Watanabe Kimitsuna; Ohtsuki Takashi
Identification of the residues involved in the unique serine specificity of Caenorhabditis elegans mitochondrial EF-Tu2.
Biochemistry 2006;45(36):10920-7.
2006: Numata Tomoyuki; Ikeuchi Yoshiho; Fukai Shuya; Suzuki Tsutomu; Nureki Osamu
Snapshots of tRNA sulphuration via an adenylated intermediate.
Nature 2006;442(7101):419-24.
2006: Hirabayashi Naomi; Sato Neuza Satomi; Suzuki Tsutomu
Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity.
The Journal of biological chemistry 2006;281(25):17203-11.
2006: Noma Akiko; Kirino Yohei; Ikeuchi Yoshiho; Suzuki Tsutomu
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA.
The EMBO journal 2006;25(10):2142-54.
2006: Shigi Naoki; Sakaguchi Yuriko; Suzuki Tsutomu; Watanabe Kimitsuna
Identification of two tRNA thiolation genes required for cell growth at extremely high temperatures.
The Journal of biological chemistry 2006;281(20):14296-306.
2006: Numata Tomoyuki; Ikeuchi Yoshiho; Fukai Shuya; Adachi Hiroaki; Matsumura Hiroyoshi; Takano Kazufumi; Murakami Satoshi; Inoue Tsuyoshi; Mori Yusuke; Sasaki Takatomo; Suzuki Tsutomu; Nureki Osamu
Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu).
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 4):368-71.
2006: Kirino Yohei; Yasukawa Takehiro; Marjavaara Sanna K; Jacobs Howard T; Holt Ian J; Watanabe Kimitsuna; Suzuki Tsutomu
Acquisition of the wobble modification in mitochondrial tRNALeu(CUN) bearing the G12300A mutation suppresses the MELAS molecular defect.
Human molecular genetics 2006;15(6):897-904.
2006: Numata Tomoyuki; Fukai Shuya; Ikeuchi Yoshiho; Suzuki Tsutomu; Nureki Osamu
Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex.
Structure (London, England : 1993) 2006;14(2):357-66.
2006: Mori Tomohisa; Ito Shinobu; Kita Taizo; Narita Minoru; Suzuki Tsutomu; Sawaguchi Toshiko
Effects of mu-, delta- and kappa-opioid receptor agonists on methamphetamine-induced self-injurious behavior in mice.
European journal of pharmacology 2006;532(1-2):81-7.
2006: Ikeuchi Yoshiho; Shigi Naoki; Kato Jun-Ichi; Nishimura Akiko; Suzuki Tsutomu
Mechanistic insights into sulfur relay by multiple sulfur mediators involved in thiouridine biosynthesis at tRNA wobble positions.
Molecular cell 2006;21(1):97-108.
2006: Ote Tomotake; Hashimoto Masayuki; Ikeuchi Yoshiho; Su'etsugu Masayuki; Suzuki Tsutomu; Katayama Tsutomu; Kato Jun-ichi
Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation.
Molecular microbiology 2006;59(1):265-75.
2006: Shigi Naoki; Suzuki Tsutomu; Terada Takaho; Shirouzu Mikako; Yokoyama Shigeyuki; Watanabe Kimitsuna
Temperature-dependent biosynthesis of 2-thioribothymidine of Thermus thermophilus tRNA.
The Journal of biological chemistry 2006;281(4):2104-13.
2006: Kitahara Kei; Sato Neuza S; Namba Naoki; Yokota Takuya; Tsujimura Tarou; Suzuki Tsutomu
Systematic deletion of rRNAs for investigating ribosome architecture and function.
Nucleic acids symposium series (2004) 2006;(50):287-8.
2006: Noma Akiko; Suzuki Tsutomu
Ribonucleome analysis identified enzyme genes responsible for wybutosine synthesis.
Nucleic acids symposium series (2004) 2006;(50):65-6.
2005: Suzuki Tsutomu
[The world of RNA modifications; another topics of functional RNAs]
Seikagaku. The Journal of Japanese Biochemical Society 2005;77(12):1481-96.
2005: Shigi Narumi; Suzuki Tsutomu
[Unique translation system and mitochondrial genome evolution]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2005;50(14 Suppl):1732-6.
2005: Zhang Li; Ging Ng Ching; Komoda Taeko; Hanada Takao; Suzuki Tsutomu; Watanabe Kimitsuna
Antibiotic susceptibility of mammalian mitochondrial translation.
FEBS letters 2005;579(28):6423-7.
2005: Chimnaronk Sarin; Gravers Jeppesen Mads; Suzuki Tsutomu; Nyborg Jens; Watanabe Kimitsuna
Dual-mode recognition of noncanonical tRNAs(Ser) by seryl-tRNA synthetase in mammalian mitochondria.
The EMBO journal 2005;24(19):3369-79.
2005: Ikeuchi Yoshiho; Soma Akiko; Ote Tomotake; Kato Jun-ichi; Sekine Yasuhiko; Suzuki Tsutomu
molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition.
Molecular cell 2005;19(2):235-46.
2005: Sakurai Masayuki; Ohtsuki Takashi; Suzuki Tsutomu; Watanabe Kimitsuna
Unusual usage of wobble modifications in mitochondrial tRNAs of the nematode Ascaris suum.
FEBS letters 2005;579(13):2767-72.
2005: Nakanishi Kotaro; Fukai Shuya; Ikeuchi Yoshiho; Soma Akiko; Sekine Yasuhiko; Suzuki Tsutomu; Nureki Osamu
Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(21):7487-92.
2005: Yasukawa Takehiro; Kirino Yohei; Ishii Norie; Holt Ian J; Jacobs Howard T; Makifuchi Takao; Fukuhara Nobuyoshi; Ohta Shigeo; Suzuki Tsutomu; Watanabe Kimitsuna
Wobble modification deficiency in mutant tRNAs in patients with mitochondrial diseases.
FEBS letters 2005;579(13):2948-52.
2005: Kirino Yohei; Goto Yu-Ichi; Campos Yolanda; Arenas Joaquin; Suzuki Tsutomu
Specific correlation between the wobble modification deficiency in mutant tRNAs and the clinical features of a human mitochondrial disease.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(20):7127-32.
2005: Kirino Yohei; Suzuki Tsutomu
Human mitochondrial diseases associated with tRNA wobble modification deficiency.
RNA biology 2005;2(2):41-4.
2005: Umeda Noriko; Suzuki Takeo; Yukawa Masashi; Ohya Yoshikazu; Shindo Heisaburo; Watanabe Kimitsuna; Suzuki Tsutomu
Mitochondria-specific RNA-modifying enzymes responsible for the biosynthesis of the wobble base in mitochondrial tRNAs. Implications for the molecular pathogenesis of human mitochondrial diseases.
The Journal of biological chemistry 2005;280(2):1613-24.
2004: Mori Tomohisa; Ito Shinobu; Narita Minoru; Suzuki Tsutomu; Sawaguchi Toshiko
Combined effects of psychostimulants and morphine on locomotor activity in mice.
Journal of pharmacological sciences 2004;96(4):450-8.
2004: Kirino Yohei; Yasukawa Takehiro; Ohta Shigeo; Akira Shigeo; Ishihara Kaisuke; Watanabe Kimitsuna; Suzuki Tsutomu
Codon-specific translational defect caused by a wobble modification deficiency in mutant tRNA from a human mitochondrial disease.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(42):15070-5.
2004: Chimnaronk Sarin; Jeppesen Mads Gravers; Shimada Nobukazu; Suzuki Tsutomu; Nyborg Jens; Watanabe Kimitsuna
Crystallization and preliminary X-ray diffraction study of mammalian mitochondrial seryl-tRNA synthetase.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 7):1319-22.
2004: Hino Narumi; Suzuki Tsutomu; Yasukawa Takehiro; Seio Kohji; Watanabe Kimitsuna; Ueda Takuya
The pathogenic A4269G mutation in human mitochondrial tRNA(Ile) alters the T-stem structure and decreases the binding affinity for elongation factor Tu.
Genes to cells : devoted to molecular & cellular mechanisms 2004;9(3):243-52.
2004: Terasaki Maki; Suzuki Tsutomu; Hanada Takao; Watanabe Kimitsuna
Functional compatibility of elongation factors between mammalian mitochondrial and bacterial ribosomes: characterization of GTPase activity and translation elongation by hybrid ribosomes bearing heterologous L7/12 proteins.
Journal of molecular biology 2004;336(2):331-42.
2003: Kurata Shinya; Ohtsuki Takashi; Suzuki Tsutomu; Watanabe Kimitsuna
Quick two-step RNA ligation employing periodate oxidation.
Nucleic acids research 2003;31(22):e145.
2003: Soma Akiko; Ikeuchi Yoshiho; Kanemasa Satoru; Kobayashi Kazuo; Ogasawara Naotake; Ote Tomotake; Kato Jun-ichi; Watanabe Kimitsuna; Sekine Yasuhiko; Suzuki Tsutomu
An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA.
Molecular cell 2003;12(3):689-98.
2003: Tomari Yukihide; Hino Narumi; Nagaike Takashi; Suzuki Tsutomu; Ueda Takuya
Decreased CCA-addition in human mitochondrial tRNAs bearing a pathogenic A4317G or A10044G mutation.
The Journal of biological chemistry 2003;278(19):16828-33.
2003: Ying Bei-Wen; Suzuki Tsutomu; Shimizu Yoshihiro; Ueda Takuya
A novel screening system for self-mRNA targeting proteins.
Journal of biochemistry 2003;133(4):485-91.
2003: Kamiya Noriho; Tanaka Tsutomu; Suzuki Tsutomu; Takazawa Takeshi; Takeda Shuji; Watanabe Kimitsuna; Nagamune Teruyuki
S-peptide as a potent peptidyl linker for protein cross-linking by microbial transglutaminase from Streptomyces mobaraensis.
Bioconjugate chemistry 2003;14(2):351-7.
2003: Kaneko Tomonori; Suzuki Takeo; Kapushoc Stephen T; Rubio Mary Anne; Ghazvini Jafar; Watanabe Kimitsuna; Simpson Larry; Suzuki Tsutomu
Wobble modification differences and subcellular localization of tRNAs in Leishmania tarentolae: implication for tRNA sorting mechanism.
The EMBO journal 2003;22(3):657-67.
2003: Zhang Li; Sato Neuza Satomi; Watanabe Kimitsuna; Suzuki Tsutomu
Functional genetic selection of the decoding center in E. coli 16S rRNA.
Nucleic acids research. Supplement (2001) 2003;(3):319-20.
2003: Katoh Takayuki; Susa Motoki; Suzuki Takeo; Umeda Noriko; Watanabe Kimitsuna; Suzuki Tsutomu
Simple and rapid synthesis of siRNA derived from in vitro transcribed shRNA.
Nucleic acids research. Supplement (2001) 2003;(3):249-50.
2003: Kurata Shinya; Ohtsuki Takashi; Wada Takeshi; Kirino Yohei; Takai Kazuyuki; Saigo Kazuhiko; Watanabe Kimitsuna; Suzuki Tsutomu
Decoding property of C5 uridine modification at the wobble position of tRNA anticodon.
Nucleic acids research. Supplement (2001) 2003;(3):245-6.
2002: Suzuki Takeo; Suzuki Tsutomu; Wada Takeshi; Saigo Kazuhiko; Watanabe Kimitsuna
Taurine as a constituent of mitochondrial tRNAs: new insights into the functions of taurine and human mitochondrial diseases.
The EMBO journal 2002;21(23):6581-9.
2002: Yasukawa Takehiro; Suzuki Tsutomu; Ohta Shigeo; Watanabe Kimitsuna
Wobble modification defect suppresses translational activity of tRNAs with MERRF and MELAS mutations.
Mitochondrion 2002;2(1-2):129-41.
2002: Shigi Naoki; Suzuki Tsutomu; Tamakoshi Masatada; Oshima Tairo; Watanabe Kimitsuna
Conserved bases in the TPsi C loop of tRNA are determinants for thermophile-specific 2-thiouridylation at position 54.
The Journal of biological chemistry 2002;277(42):39128-35.
2002: Suzuki Tsutomu; Watanabe Kimitsuna
[Biosynthesis of rRNA and structure of the ribosome]
Nippon rinsho. Japanese journal of clinical medicine 2002;60 Suppl 4():41-5.
2002: Yasukawa Takehiro; Suzuki Tsutomu; Watanabe Kimitsuna; Yasukawa Takehiro; Ohta Shigeo
[Wobble modification defect suppresses translational activity of tRNAs with MERRF and MELAS mutations]
Nippon rinsho. Japanese journal of clinical medicine 2002;60 Suppl 4():197-201.
2002: Shimada Nobukazu; Matsuzaki Keiko; Suzuki Takeo; Suzuki Tsutomu; Watanabe Kimitsuna
Quality control of translation through the kinetic discrimination of tRNAs in the network of aminoacyl-tRNA synthetases.
Nucleic acids research. Supplement (2001) 2002;(2):79-80.
2002: Tomari Yukihide; Suzuki Tsutomu; Ueda Takuya
tRNA recognition by CCA-adding enzyme.
Nucleic acids research. Supplement (2001) 2002;(2):77-8.
2002: Wada Takeshi; Shimazaki Tomomi; Nakagawa Shingo; Otuki Takashi; Kurata Shinya; Suzuki Tsutomu; Watanabe Kimitsuna; Saigo Kazuhiko
Chemical synthesis of novel taurine-containing uridine derivatives.
Nucleic acids research. Supplement (2001) 2002;(2):11-2.
1997: Suzuki T
[Application of porous bioceramics for a hybrid type artificial liver system]
Nippon rinsho. Japanese journal of clinical medicine 1997;55(8):2140-7.

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