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Karel Svoboda

Research Profile

Anatomy

Living Beings

Physiology

Chemicals & Drugs

Procedures

Microscopy, Confocal

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Models, Neurological

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Publications

TOP 3
Lorenz Pammer; Nathan G Clack; S Andrew Hires; Daniel Huber; Eugene W Myers; Daniel H O'Connor; Karel Svoboda
The Mechanical Variables Underlying Object Localization along the Axis of the Whisker.
Bryan M Hooks; Tianyi Mao; Karel Svoboda; Naoki Yamawaki; Diego A Gutnisky; Gordon M G Shepherd
Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex.
Ning-long Xu; Mark T Harnett; Daniel Huber; Daniel H O'Connor; Karel Svoboda; Stephen R Williams; Jeffrey C Magee
Nonlinear dendritic integration of sensory and motor input during an active sensing task.

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All Publications

2013: Lorenz Pammer; Nathan G Clack; S Andrew Hires; Daniel Huber; Eugene W Myers; Daniel H O'Connor; Karel Svoboda
The Mechanical Variables Underlying Object Localization along the Axis of the Whisker.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2013;33(16):6726-41.
2013: Bryan M Hooks; Tianyi Mao; Karel Svoboda; Naoki Yamawaki; Diego A Gutnisky; Gordon M G Shepherd
Organization of cortical and thalamic input to pyramidal neurons in mouse motor cortex.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2013;33(2):748-60.
2012: Ning-long Xu; Mark T Harnett; Daniel Huber; Daniel H O'Connor; Karel Svoboda; Stephen R Williams; Jeffrey C Magee
Nonlinear dendritic integration of sensory and motor input during an active sensing task.
Nature 2012;492(7428):247-51.
2012: Leopoldo Petreanu; Lin Tian; Ning-long Xu; Diego A Gutnisky; Daniel Huber; Loren Looger; Dan H O'Connor; Karel Svoboda
Activity in motor-sensory projections reveals distributed coding in somatosensation.
Nature 2012;489(7415):299-303.
2012: Anthony Holtmaat; Karel Svoboda; Josh T Trachtenberg; Linda Wilbrecht; Vincenzo De Paola; Carlos Portera-Cailliau
Imaging neocortical neurons through a chronic cranial window.
Cold Spring Harbor protocols 2012;2012(6):694-701.
2012: D Huber; Loren L Looger; D H O'Connor; Thomas Oertner; S Peron; L Tian; J S Wiegert; D A Gutnisky; Karel Svoboda
Multiple dynamic representations in the motor cortex during sensorimotor learning.
Nature 2012;484(7395):473-8.
2012: Hatim A Zariwala; Hongkui Zeng; Bart G Borghuis; Chris I De Zeeuw; Tycho M Hoogland; Loren L Looger; Linda Madisen; Karel Svoboda; Lin Tian; Tsai-Wen Chen
A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2012;32(9):3131-41.
2012: Nathan G Clack; Andrew Hires; Daniel Huber; Daniel H O'Connor; Simon Peron; Leopoldo Petreanu; Karel Svoboda; Eugene W Myers
Automated tracking of whiskers in videos of head fixed rodents.
PLoS computational biology 2012;8(7):e1002591.
2011: Tianyi Mao; Leopoldo Petreanu; Bryan M Hooks; Daniel Huber; Deniz Kusefoglu; Karel Svoboda
Long-range neuronal circuits underlying the interaction between sensory and motor cortex.
Neuron 2011;72(1):111-23.
2011: Karel Svoboda
The past, present, and future of single neuron reconstruction.
Neuroinformatics 2011;9(2-3):97-8.
2011: Simon Peron; Karel Svoboda
From cudgel to scalpel: toward precise neural control with optogenetics.
Nature methods 2011;8(1):30-4.
2010: Hysell V Oviedo; Ingrid Bureau; Karel Svoboda; Anthony M Zador
The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits.
Nature neuroscience 2010;13(11):1413-20.
2010: Linda Wilbrecht; Anthony Holtmaat; Nick Wright; Kevin Fox; Karel Svoboda
Structural plasticity underlies experience-dependent functional plasticity of cortical circuits.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2010;30(14):4927-32.
2009: Lin Tian; S Andrew Hires; Tianyi Mao; Daniel Huber; M Eugenia Chiappe; Sreekanth H Chalasani; Leopoldo Petreanu; Jasper Akerboom; Sean A McKinney; Eric Schreiter; Cornelia I Bargmann; Vivek Jayaraman; Karel Svoboda; Loren L Looger
Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Nature methods 2009;6(12):875-81.
2009: Haining Zhong; Gek-Ming Sia; Takashi R Sato; Noah W Gray; Tianyi Mao; Zaza Khuchua; Richard Huganir; Karel Svoboda
Subcellular dynamics of type II PKA in neurons.
Neuron 2009;62(3):363-74.
2009: Karen Zito; Volker Scheuss; Graham W Knott; Travis Hill; Karel Svoboda
Rapid functional maturation of nascent dendritic spines.
Neuron 2009;61(2):247-58.
2009: Anthony J G D Holtmaat; Tobias Bonhoeffer; David K Chow; Jyoti Chuckowree; Vincenzo De Paola; Sonja B Hofer; Mark Hübener; Tara Keck; Graham W Knott; Wei-Chung A Lee; Ricardo Mostany; Tom D Mrsic-Flogel; Elly Nedivi; Carlos Portera-Cailliau; Karel Svoboda; Joshua T Trachtenberg; Linda Wilbrecht
Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window.
Nature protocols 2009;4(8):1128-44.
2008: Ingrid Bureau; Gordon M G Shepherd; Karel Svoboda
Circuit and plasticity defects in the developing somatosensory cortex of FMR1 knock-out mice.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2008;28(20):5178-88.
2008: Daniel Huber; Leopoldo Petreanu; Nima Ghitani; Sachin Ranade; Tomás Hromádka; Zachary F Mainen; Karel Svoboda
Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice.
Nature 2008;451(7174):61-4.
2008: Tianyi Mao; Daniel H O'Connor; Volker Scheuss; Junichi Nakai; Karel Svoboda
Characterization and subcellular targeting of GCaMP-type genetically-encoded calcium indicators.
PloS one 2008;3(3):e1796.
2007: Christopher D Harvey; Karel Svoboda
Locally dynamic synaptic learning rules in pyramidal neuron dendrites.
Nature 2007;450(7173):1195-200.
2007: Takashi R Sato; Noah W Gray; Zachary F Mainen; Karel Svoboda
The functional microarchitecture of the mouse barrel cortex.
PLoS biology 2007;5(7):e189.
2007: Leopoldo Petreanu; Daniel Huber; Aleksander Sobczyk; Karel Svoboda
Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections.
Nature neuroscience 2007;10(5):663-8.
2007: Aleksander Sobczyk; Karel Svoboda
Activity-dependent plasticity of the NMDA-receptor fractional Ca2+ current.
Neuron 2007;53(1):17-24.
2006: Ingrid Bureau; Francisca von Saint Paul; Karel Svoboda
Interdigitated paralemniscal and lemniscal pathways in the mouse barrel cortex.
PLoS biology 2006;4(12):e382.
2006: Noah W Gray; Robby M Weimer; Ingrid Bureau; Karel Svoboda
Rapid redistribution of synaptic PSD-95 in the neocortex in vivo.
PLoS biology 2006;4(11):e370.
2006: Graham W Knott; Anthony J G D Holtmaat; Linda Wilbrecht; Egbert Welker; Karel Svoboda
Spine growth precedes synapse formation in the adult neocortex in vivo.
Nature neuroscience 2006;9(9):1117-24.
2006: Volker Scheuss; Ryohei Yasuda; Aleksander Sobczyk; Karel Svoboda
Nonlinear [Ca2+] signaling in dendrites and spines caused by activity-dependent depression of Ca2+ extrusion.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2006;26(31):8183-94.
2006: Anthony J G D Holtmaat; Linda Wilbrecht; Graham W Knott; Egbert Welker; Karel Svoboda
Experience-dependent and cell-type-specific spine growth in the neocortex.
Nature 2006;441(7096):979-83.
2006: Karel Svoboda; Ryohei Yasuda
Principles of two-photon excitation microscopy and its applications to neuroscience.
Neuron 2006;50(6):823-39.
2006: Vincenzo De Paola; Anthony J G D Holtmaat; Graham W Knott; Sen Song; Linda Wilbrecht; Pico Caroni; Karel Svoboda
Cell type-specific structural plasticity of axonal branches and boutons in the adult neocortex.
Neuron 2006;49(6):861-75.
2006: Ryohei Yasuda; Christopher D Harvey; Haining Zhong; Aleksander Sobczyk; Linda van Aelst; Karel Svoboda
Supersensitive Ras activation in dendrites and spines revealed by two-photon fluorescence lifetime imaging.
Nature neuroscience 2006;9(2):283-91.
2005: Alla Y Karpova; Dougal G R Tervo; Noah W Gray; Karel Svoboda
Rapid and reversible chemical inactivation of synaptic transmission in genetically targeted neurons.
Neuron 2005;48(5):727-35.
2005: Corey Harwell; Barry Burbach; Karel Svoboda; Elly Nedivi
Regulation of cpg15 expression during single whisker experience in the barrel cortex of adult mice.
Journal of neurobiology 2005;65(1):85-96.
2005: Carlos Portera-Cailliau; Robby M Weimer; Vincenzo De Paola; Pico Caroni; Karel Svoboda
Diverse modes of axon elaboration in the developing neocortex.
PLoS biology 2005;3(8):e272.
2005: Aleksander Sobczyk; Volker Scheuss; Karel Svoboda
NMDA receptor subunit-dependent [Ca2+] signaling in individual hippocampal dendritic spines.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2005;25(26):6037-46.
2005: Gordon M G Shepherd; Karel Svoboda
Laminar and columnar organization of ascending excitatory projections to layer 2/3 pyramidal neurons in rat barrel cortex.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2005;25(24):5670-9.
2005: Gordon M G Shepherd; Armen Stepanyants; Ingrid Bureau; Dmitri B Chklovskii; Karel Svoboda
Geometric and functional organization of cortical circuits.
Nature neuroscience 2005;8(6):782-90.
2005: Veronica Egger; Karel Svoboda; Zachary F Mainen
Dendrodendritic synaptic signals in olfactory bulb granule cells: local spine boost and global low-threshold spike.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2005;25(14):3521-30.
2005: Anthony J G D Holtmaat; Joshua T Trachtenberg; Linda Wilbrecht; Gordon M G Shepherd; Xiaoqun Zhang; Graham W Knott; Karel Svoboda
Transient and persistent dendritic spines in the neocortex in vivo.
Neuron 2005;45(2):279-91.
2004: Graziella Di Cristo; Caizhi Wu; Bidisha Chattopadhyaya; Fabrice Ango; Graham W Knott; Egbert Welker; Karel Svoboda; Z Josh Huang
Subcellular domain-restricted GABAergic innervation in primary visual cortex in the absence of sensory and thalamic inputs.
Nature neuroscience 2004;7(11):1184-6.
2004: Thomas Pologruto; Ryohei Yasuda; Karel Svoboda
Monitoring neural activity and [Ca2+] with genetically encoded Ca2+ indicators.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(43):9572-9.
2004: Michael Brecht; Michale S Fee; Olga Garaschuk; Fritjof Helmchen; Troy W Margrie; Karel Svoboda; Pavel Osten
Novel approaches to monitor and manipulate single neurons in vivo.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(42):9223-7.
2004: Karen Zito; Graham W Knott; Gordon M G Shepherd; Shirish Shenolikar; Karel Svoboda
Induction of spine growth and synapse formation by regulation of the spine actin cytoskeleton.
Neuron 2004;44(2):321-34.
2004: Yalin Wang; Hui-Fu Guo; Thomas Pologruto; Frances Hannan; Inessa Hakker; Karel Svoboda; Yi Zhong
Stereotyped odor-evoked activity in the mushroom body of Drosophila revealed by green fluorescent protein-based Ca2+ imaging.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(29):6507-14.
2004: Miguel Maravall; Edward A Stern; Karel Svoboda
Development of intrinsic properties and excitability of layer 2/3 pyramidal neurons during a critical period for sensory maps in rat barrel cortex.
Journal of neurophysiology 2004;92(1):144-56.
2004: Ingrid Bureau; Gordon M G Shepherd; Karel Svoboda
Precise development of functional and anatomical columns in the neocortex.
Neuron 2004;42(5):789-801.
2004: Miguel Maravall; Ingrid Y Y Koh; W Brent Lindquist; Karel Svoboda
Experience-dependent changes in basal dendritic branching of layer 2/3 pyramidal neurons during a critical period for developmental plasticity in rat barrel cortex.
Cerebral cortex (New York, N.Y. : 1991) 2004;14(6):655-64.
2004: Esther A Nimchinsky; Ryohei Yasuda; Thomas Oertner; Karel Svoboda
The number of glutamate receptors opened by synaptic stimulation in single hippocampal spines.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(8):2054-64.
2004: Ryohei Yasuda; Esther A Nimchinsky; Volker Scheuss; Thomas Pologruto; Thomas Oertner; Bernardo L Sabatini; Karel Svoboda
Imaging calcium concentration dynamics in small neuronal compartments.
Science's STKE : signal transduction knowledge environment 2004;2004(219):pl5.
2003: Ryohei Yasuda; Bernardo L Sabatini; Karel Svoboda
Plasticity of calcium channels in dendritic spines.
Nature neuroscience 2003;6(9):948-55.
2003: Veronica Egger; Karel Svoboda; Zachary F Mainen
Mechanisms of lateral inhibition in the olfactory bulb: efficiency and modulation of spike-evoked calcium influx into granule cells.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2003;23(20):7551-8.
2003: Thomas Pologruto; Bernardo L Sabatini; Karel Svoboda
ScanImage: flexible software for operating laser scanning microscopes.
Biomedical engineering online 2003;2():13.
2003: Gordon M G Shepherd; Thomas Pologruto; Karel Svoboda
Circuit analysis of experience-dependent plasticity in the developing rat barrel cortex.
Neuron 2003;38(2):277-89.
2002: Joshua T Trachtenberg; Brian E Chen; Graham W Knott; Guoping Feng; Joshua R Sanes; Egbert Welker; Karel Svoboda
Long-term in vivo imaging of experience-dependent synaptic plasticity in adult cortex.
Nature 2002;420(6917):788-94.
2002: Karen Zito; Karel Svoboda
Activity-dependent synaptogenesis in the adult Mammalian cortex.
Neuron 2002;35(6):1015-7.
2002: Thomas Oertner; Karel Svoboda
Subliminal messages in hippocampal pyramidal cells.
The Journal of physiology 2002;543(Pt 2):397.
2002: Thomas Oertner; Bernardo L Sabatini; Esther A Nimchinsky; Karel Svoboda
Facilitation at single synapses probed with optical quantal analysis.
Nature neuroscience 2002;5(7):657-64.
2002: Ingrid Y Y Koh; W Brent Lindquist; Karen Zito; Esther A Nimchinsky; Karel Svoboda
An image analysis algorithm for dendritic spines.
Neural computation 2002;14(6):1283-310.
2002: Bernardo L Sabatini; Thomas Oertner; Karel Svoboda
The life cycle of Ca(2+) ions in dendritic spines.
Neuron 2002;33(3):439-52.
2002: Esther A Nimchinsky; Bernardo L Sabatini; Karel Svoboda
Structure and function of dendritic spines.
Annual review of physiology 2002;64():313-53.
2001: Edward A Stern; Miguel Maravall; Karel Svoboda
Rapid development and plasticity of layer 2/3 maps in rat barrel cortex in vivo.
Neuron 2001;31(2):305-15.
2001: Esther A Nimchinsky; A M Oberlander; Karel Svoboda
Abnormal development of dendritic spines in FMR1 knock-out mice.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2001;21(14):5139-46.
2001: Bernardo L Sabatini; Miguel Maravall; Karel Svoboda
Ca(2+) signaling in dendritic spines.
Current opinion in neurobiology 2001;11(3):349-56.
2000: Bernardo L Sabatini; Karel Svoboda
Analysis of calcium channels in single spines using optical fluctuation analysis.
Nature 2000;408(6812):589-93.
2000: B E Chen; B Lendvai; Esther A Nimchinsky; B Burbach; K Fox; Karel Svoboda
Imaging high-resolution structure of GFP-expressing neurons in neocortex in vivo.
Learning & memory (Cold Spring Harbor, N.Y.) 2000;7(6):433-41.
2000: Leroy Charles Cox; Winfried Denk; David W Tank; Karel Svoboda
Action potentials reliably invade axonal arbors of rat neocortical neurons.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(17):9724-8.
2000: Miguel Maravall; Zachary F Mainen; Bernardo L Sabatini; Karel Svoboda
Estimating intracellular calcium concentrations and buffering without wavelength ratioing.
Biophysical journal 2000;78(5):2655-67.
2000: B Lendvai; Edward A Stern; B Chen; Karel Svoboda
Experience-dependent plasticity of dendritic spines in the developing rat barrel cortex in vivo.
Nature 2000;404(6780):876-81.
1999: Fritjof Helmchen; Karel Svoboda; Winfried Denk; David W Tank
In vivo dendritic calcium dynamics in deep-layer cortical pyramidal neurons.
Nature neuroscience 1999;2(11):989-96.
1999: Song-Hai Shi; Y Hayashi; R S Petralia; S H Zaman; Robert Wenthold; Karel Svoboda; Roberto Malinow
Rapid spine delivery and redistribution of AMPA receptors after synaptic NMDA receptor activation.
Science (New York, N.Y.) 1999;284(5421):1811-6.
1999: Zachary F Mainen; Mirjana Maletic-Savatic; Song-Hai Shi; Y Hayashi; Roberto Malinow; Karel Svoboda
Two-photon imaging in living brain slices.
Methods (San Diego, Calif.) 1999;18(2):231-9, 181.
1999: Zachary F Mainen; Roberto Malinow; Karel Svoboda
Synaptic calcium transients in single spines indicate that NMDA receptors are not saturated.
Nature 1999;399(6732):151-5.
1999: Mirjana Maletic-Savatic; Roberto Malinow; Karel Svoboda
Rapid dendritic morphogenesis in CA1 hippocampal dendrites induced by synaptic activity.
Science (New York, N.Y.) 1999;283(5409):1923-7.
1999: Karel Svoboda; Zachary F Mainen
Synaptic [Ca2+]: intracellular stores spill their guts.
Neuron 1999;22(3):427-30.
1999: Karel Svoboda; Fritjof Helmchen; Winfried Denk; David W Tank
Spread of dendritic excitation in layer 2/3 pyramidal neurons in rat barrel cortex in vivo.
Nature neuroscience 1999;2(1):65-73.
1997: Winfried Denk; Karel Svoboda
Photon upmanship: why multiphoton imaging is more than a gimmick.
Neuron 1997;18(3):351-7.
1997: Karel Svoboda; Winfried Denk; David Kleinfeld; David W Tank
In vivo dendritic calcium dynamics in neocortical pyramidal neurons.
Nature 1997;385(6612):161-5.
1996: Winfried Denk; Rafael Yuste; Karel Svoboda; David W Tank
Imaging calcium dynamics in dendritic spines.
Current opinion in neurobiology 1996;6(3):372-8.
1996: Karel Svoboda; David W Tank; Winfried Denk
Direct measurement of coupling between dendritic spines and shafts.
Science (New York, N.Y.) 1996;272(5262):716-9.