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Selene Swanson

Research Profile

Chemicals & Drugs

Anatomy

Living Beings

Saccharomyces cerevisiae

Phenomena

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Proteomics

Physiology

Chromatin Assembly and Disassembly

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Amanda M Bonner; Jennifer A Chisholm; Kimberly A Collins; Laurence Florens; Jennifer M Friederichs; Stacie E Hughes; Sue L Jaspersen; Danny E Miller; Marissa C Pelot; Brian D Slaughter; S Kendall Smith; Selene K Swanson; Jay R Unruh; Michael P Washburn; R Scott Hawley
Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains.
Nadia Korfali; Poonam Malik; Dzmitry G Batrakou; Jose de Las Heras; Laurence Florens; Alastair R W Kerr; Vlastimil Srsen; Selene K Swanson; Gavin S Wilkie; Nikolaj Zuleger; Eric C Schirmer
The nuclear envelope proteome differs notably between tissues.
Tamaki Suganuma; Selene K Swanson; Michael P Washburn; Laurence Florens; Arcady Mushegian; Jerry L Workman
A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component.

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All Publications

2013: Amanda M Bonner; Jennifer A Chisholm; Kimberly A Collins; Laurence Florens; Jennifer M Friederichs; Stacie E Hughes; Sue L Jaspersen; Danny E Miller; Marissa C Pelot; Brian D Slaughter; S Kendall Smith; Selene K Swanson; Jay R Unruh; Michael P Washburn; R Scott Hawley
Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(13):E1222-31.
2012: Nadia Korfali; Poonam Malik; Dzmitry G Batrakou; Jose de Las Heras; Laurence Florens; Alastair R W Kerr; Vlastimil Srsen; Selene K Swanson; Gavin S Wilkie; Nikolaj Zuleger; Eric C Schirmer
The nuclear envelope proteome differs notably between tissues.
Nucleus (Austin, Tex.) 2012;3(6):552-64.
2012: Tamaki Suganuma; Selene K Swanson; Michael P Washburn; Laurence Florens; Arcady Mushegian; Jerry L Workman
A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component.
Molecular & cellular proteomics : MCP 2012;11(5):90-9.
2012: Satomi Takeo; Michael P Washburn; Toshiro Aigaki; Laurence Florens; Yasuhiro Nakai; Kavyasree Nandanan; Selene K Swanson; R Scott Hawley
Shaggy/glycogen synthase kinase 3β and phosphorylation of Sarah/regulator of calcineurin are essential for completion of Drosophila female meiosis.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(17):6382-9.
2012: Ximena P Steinberg; Tamaki Suganuma; Selene K Swanson; Michael Washburn; Jerry L Workman; Yaiza Fernández García; Matias I Hepp; José L Gutiérrez
Human CCAAT/enhancer-binding protein β interacts with chromatin remodeling complexes of the imitation switch subfamily.
Biochemistry 2012;51(5):952-62.
2011: Vikki M Weake; Susan M Abmayr; Andrew Box; Jamie O Dyer; Laurence Florens; Allison Peak; Christopher Seidel; Selene K Swanson; Michael P Washburn; Jerry L Workman
Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation.
Genes & development 2011;25(14):1499-509.
2011: Hidehisa Takahashi; Chieri Tomomori-Sato; Michael Washburn; Charles A S Banks; Ronald C Conaway; Laurence Florens; Stephanie E Kong; Chengqi Lin; Skylar A Martin-Brown; Tari J Parmely; Shigeo Sato; Chris W Seidel; Ali Shilatifard; Edwin R Smith; Selene K Swanson; Henrietta Szutorisz; Joan Weliky Conaway
Human mediator subunit MED26 functions as a docking site for transcription elongation factors.
Cell 2011;146(1):92-104.
2011: Kasia Hrecka; Malgorzata Kesik-Brodacka; Laurence Florens; Magda Gierszewska; Caili Hao; Smita Srivastava; Selene K Swanson; Michael P Washburn; Jacek Skowronski
Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein.
Nature 2011;474(7353):658-61.
2011: Larisa Litovchick; Laurence A Florens; Selene K Swanson; Michael Washburn; James A DeCaprio
DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly.
Genes & development 2011;25(8):801-13.
2011: Lu Chen; Yong Cai; Jingji Jin; Laurence Florens; Selene K Swanson; Michael P Washburn; Joan Weliky Conaway; Ronald C Conaway
Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling.
The Journal of biological chemistry 2011;286(13):11283-9.
2011: Kenneth K Lee; Mihaela E Sardiu; Selene K Swanson; Michael Torok; Laurence Florens; Joshua M Gilmore; Patrick A Grant; Jerry L Workman; Michael Washburn
Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes.
Molecular systems biology 2011;7():503.
2011: Gavin S Wilkie; Nadia Korfali; Selene K Swanson; Poonam Malik; Vlastimil Srsen; Dzmitry G Batrakou; Jose de las Heras; Nikolaj Zuleger; Alastair R W Kerr; Laurence Florens; Eric C Schirmer
Several novel nuclear envelope transmembrane proteins identified in skeletal muscle have cytoskeletal associations.
Molecular & cellular proteomics : MCP 2011;10(1):M110.003129.
2010: Nadia Korfali; Gavin S Wilkie; Selene K Swanson; Vlastimil Srsen; Dzmitry G Batrakou; Elizabeth A L Fairley; Poonam Malik; Nikolaj Zuleger; Alexander Goncharevich; Jose de Las Heras; David A Kelly; Alastair R W Kerr; Laurence Florens; Eric C Schirmer
The leukocyte nuclear envelope proteome varies with cell activation and contains novel transmembrane proteins that affect genome architecture.
Molecular & cellular proteomics : MCP 2010;9(12):2571-85.
2010: So Hee Kwon; Laurence Florens; Selene K Swanson; Michael Washburn; Susan M Abmayr; Jerry L Workman
Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II.
Genes & development 2010;24(19):2133-45.
2010: Tamaki Suganuma; Arcady Mushegian; Selene K Swanson; Susan M Abmayr; Laurence Florens; Michael Washburn; Jerry L Workman
The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes.
Cell 2010;142(5):726-36.
2010: Yong Cai; Jingji Jin; Selene K Swanson; Michael D Cole; Seung Hyuk Choi; Laurence Florens; Michael Washburn; Joan Weliky Conaway; Ronald C Conaway
Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex.
The Journal of biological chemistry 2010;285(7):4268-72.
2009: Vikki M Weake; Selene K Swanson; Arcady Mushegian; Laurence Florens; Michael Washburn; Susan M Abmayr; Jerry L Workman
A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.
Genes & development 2009;23(24):2818-23.
2009: Aaron J Gottschalk; Gyula Timinszky; Stephanie E Kong; Jingji Jin; Yong Cai; Selene K Swanson; Michael Washburn; Laurence Florens; Andreas G Ladurner; Joan W Conaway; Ronald C Conaway
Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(33):13770-4.
2009: Yoh-hei Takahashi; Jung-Shin Lee; Selene K Swanson; Anita Saraf; Laurence Florens; Michael Washburn; Raymond C Trievel; Ali Shilatifard
Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1.
Molecular and cellular biology 2009;29(13):3478-86.
2009: Mingan Shi; Carolyn J Vivian; Kyung-Jong Lee; Chunmin Ge; Keiko Morotomi-Yano; Claudia Manzl; Florian Bock; Shigeo Sato; Chieri Tomomori-Sato; Ruihong Zhu; Jeffrey S Haug; Selene K Swanson; Michael Washburn; David J Chen; Benjamin P C Chen; Andreas Villunger; Laurence Florens; Chunying Du
DNA-PKcs-PIDDosome: a nuclear caspase-2-activating complex with role in G2/M checkpoint maintenance.
Cell 2009;136(3):508-20.
2009: Selene K Swanson; Laurence Florens; Michael Washburn
Generation and analysis of multidimensional protein identification technology datasets.
Methods in molecular biology (Clifton, N.J.) 2009;492():1-20.
2009: Kenneth K Lee; Selene K Swanson; Laurence Florens; Michael Washburn; Jerry L Workman
Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes.
Epigenetics & chromatin 2009;2(1):2.
2009: Nadia Korfali; Elizabeth A L Fairley; Selene K Swanson; Laurence Florens; Eric C Schirmer
Use of sequential chemical extractions to purify nuclear membrane proteins for proteomics identification.
Methods in molecular biology (Clifton, N.J.) 2009;528():201-25.
2008: Tingting Yao; Ling Song; Jingji Jin; Yong Cai; Hidehisa Takahashi; Selene K Swanson; Michael Washburn; Laurence Florens; Ronald C Conaway; Robert E Cohen; Joan Weliky Conaway
Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex.
Molecular cell 2008;31(6):909-17.
2008: Smita Srivastava; Selene K Swanson; Nicolas Manel; Laurence Florens; Michael Washburn; Jacek Skowronski
Lentiviral Vpx accessory factor targets VprBP/DCAF1 substrate adaptor for cullin 4 E3 ubiquitin ligase to enable macrophage infection.
PLoS pathogens 2008;4(5):e1000059.
2008: Tamaki Suganuma; José L Gutiérrez; Bing Li; Laurence Florens; Selene K Swanson; Michael Washburn; Susan M Abmayr; Jerry L Workman
ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding.
Nature structural & molecular biology 2008;15(4):364-72.
2008: Norman Pavelka; Marjorie L Fournier; Selene K Swanson; Mattia Pelizzola; Paola Ricciardi-Castagnoli; Laurence Florens; Michael Washburn
Statistical similarities between transcriptomics and quantitative shotgun proteomics data.
Molecular & cellular proteomics : MCP 2008;7(4):631-44.
2008: Nawel Mahrour; William B Redwine; Laurence Florens; Selene K Swanson; Skylar A Martin-Brown; William D Bradford; Karen Staehling-Hampton; Michael Washburn; Ronald C Conaway; Joan Weliky Conaway
Characterization of Cullin-box sequences that direct recruitment of Cul2-Rbx1 and Cul5-Rbx2 modules to Elongin BC-based ubiquitin ligases.
The Journal of biological chemistry 2008;283(12):8005-13.
2008: Evangelia Koutelou; Shigeo Sato; Chieri Tomomori-Sato; Laurence Florens; Selene K Swanson; Michael Washburn; Maria Kokkinaki; Ronald C Conaway; Joan Weliky Conaway; Nicholas K Moschonas
Neuralized-like 1 (Neurl1) targeted to the plasma membrane by N-myristoylation regulates the Notch ligand Jagged1.
The Journal of biological chemistry 2008;283(7):3846-53.
2008: Mihaela E Sardiu; Yong Cai; Jingji Jin; Selene K Swanson; Ronald C Conaway; Joan Weliky Conaway; Laurence Florens; Michael Washburn
Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(5):1454-9.
2008: Erika R Geisbrecht; Shruti Haralalka; Selene K Swanson; Laurence Florens; Michael Washburn; Susan M Abmayr
Drosophila ELMO/CED-12 interacts with Myoblast city to direct myoblast fusion and ommatidial organization.
Developmental biology 2008;314(1):137-49.
2007: Jung-Shin Lee; Abhijit Shukla; Jessica Schneider; Selene K Swanson; Michael Washburn; Laurence Florens; Sukesh R Bhaumik; Ali Shilatifard
Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS.
Cell 2007;131(6):1084-96.
2007: Youbin Xiang; Satomi Takeo; Laurence Florens; Stacie E Hughes; Li-Jun Huo; William D Gilliland; Selene K Swanson; Kathy Teeter; Joel W Schwartz; Michael Washburn; Sue L Jaspersen; R Scott Hawley
The inhibition of polo kinase by matrimony maintains G2 arrest in the meiotic cell cycle.
PLoS biology 2007;5(12):e323.
2007: Chih-Chi Yuan; xinyang zhao; Laurence Florens; Selene K Swanson; Michael Washburn; Nouria Hernandez
CHD8 associates with human Staf and contributes to efficient U6 RNA polymerase III transcription.
Molecular and cellular biology 2007;27(24):8729-38.
2007: Yong Cai; Jingji Jin; Tingting Yao; Aaron J Gottschalk; Selene K Swanson; Su Wu; Yang Shi; Michael Washburn; Laurence Florens; Ronald C Conaway; Joan Weliky Conaway
YY1 functions with INO80 to activate transcription.
Nature structural & molecular biology 2007;14(9):872-4.
2007: Kasia Hrecka; Magdalena Gierszewska; Smita Srivastava; Lukasz Kozaczkiewicz; Selene K Swanson; Laurence Florens; Michael Washburn; Jacek Skowronski
Lentiviral Vpr usurps Cul4-DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(28):11778-83.
2007: Raymond Camahort; Bing Li; Laurence Florens; Selene K Swanson; Michael Washburn; Jennifer L Gerton
Scm3 is essential to recruit the histone h3 variant cse4 to centromeres and to maintain a functional kinetochore.
Molecular cell 2007;26(6):853-65.
2007: Larisa Litovchick; Subhashini Sadasivam; Laurence Florens; Xiaopeng Zhu; Selene K Swanson; Soundarapandian Velmurugan; Runsheng Chen; Michael Washburn; Xiaole (Shirley) Liu; James A DeCaprio
Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence.
Molecular cell 2007;26(4):539-51.
2007: Jeffrey R. Skaar; Laurence Florens; Takeya Tsutsumi; Takehiro Arai; Adriana Tron; Selene K Swanson; Michael Washburn; James A DeCaprio
PARC and CUL7 form atypical cullin RING ligase complexes.
Cancer research 2007;67(5):2006-14.
2007: Adam Wood; Abhijit Shukla; Jessica Schneider; Jung-Shin Lee; Julie D Stanton; Tiffany Dzuiba; Selene K Swanson; Laurence Florens; Michael Washburn; John J Wyrick; Sukesh R Bhaumik; Ali Shilatifard
Ctk complex-mediated regulation of histone methylation by COMPASS.
Molecular and cellular biology 2007;27(2):709-20.
2006: Tatyana Naryshkina; Jing Liu; Laurence Florens; Selene K Swanson; Andrey R Pavlov; Nadejda Pavlova; Ross Inman; Leonid Minakhin; Sergei A Kozyavkin; Michael Washburn; Arcady Mushegian; Konstantin Severinov
Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions.
Journal of molecular biology 2006;364(4):667-77.
2006: Laurence Florens; Michael J Carozza; Selene K Swanson; Marjorie Fournier; Michael K Coleman; Jerry L Workman; Michael Washburn
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors.
Methods (San Diego, Calif.) 2006;40(4):303-11.
2006: Sebastián Guelman; Tamaki Suganuma; Laurence Florens; Vikki Weake; Selene K Swanson; Michael Washburn; Susan M Abmayr; Jerry L Workman
The essential gene wda encodes a WD40 repeat subunit of Drosophila SAGA required for histone H3 acetylation.
Molecular and cellular biology 2006;26(19):7178-89.
2006: Tingting Yao; Ling Song; Wei Xu; George N DeMartino; Laurence Florens; Selene K Swanson; Michael Washburn; Ronald C Conaway; Joan Weliky Conaway; Robert E Cohen
Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1.
Nature cell biology 2006;8(9):994-1002.
2006: Farida Emran; Laurence Florens; Beicong Ma; Selene K Swanson; Michael Washburn; Nouria Hernandez
A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes.
Gene 2006;377():96-108.
2006: Jill M Henry; Raymond Camahort; Douglas A Rice; Laurence Florens; Selene K Swanson; Michael Washburn; Jennifer L Gerton
Mnd1/Hop2 facilitates Dmc1-dependent interhomolog crossover formation in meiosis of budding yeast.
Molecular and cellular biology 2006;26(8):2913-23.
2006: Sebastián Guelman; Tamaki Suganuma; Laurence Florens; Selene K Swanson; Cheri L Kiesecker; Thomas Kusch; Scott Anderson; John R Yates; Michael Washburn; Susan M Abmayr; Jerry L Workman
Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila.
Molecular and cellular biology 2006;26(3):871-82.
2005: Jingji Jin; Yong Cai; Tingting Yao; Aaron J Gottschalk; Laurence Florens; Selene K Swanson; José L Gutiérrez; Michael K Coleman; Jerry L Workman; Arcady Mushegian; Michael Washburn; Ronald C Conaway; Joan Weliky Conaway
A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex.
The Journal of biological chemistry 2005;280(50):41207-12.
2005: Michael J Carrozza; Bing Li; Laurence Florens; Tamaki Suganuma; Selene K Swanson; Kenneth K Lee; Wei-Jong Shia; Scott Anderson; John Yates; Michael Washburn; Jerry L Workman
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription.
Cell 2005;123(4):581-92.
2005: Michael J Carrozza; Laurence Florens; Selene K Swanson; Wei-Jong Shia; Scott Anderson; John Yates; Michael Washburn; Jerry L Workman
Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex.
Biochimica et biophysica acta 2005;1731(2):77-87; discussion 75-6.
2005: Philippe Prochasson; Laurence Florens; Selene K Swanson; Michael Washburn; Jerry L Workman
The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF.
Genes & development 2005;19(21):2534-9.
2005: Jessica Schneider; Adam Wood; Jung-Shin Lee; Rebecca Schuster; Jeff Dueker; Courtney Maguire; Selene K Swanson; Laurence Florens; Michael Washburn; Ali Shilatifard
Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression.
Molecular cell 2005;19(6):849-56.
2005: Selene K Swanson; Michael Washburn
The continuing evolution of shotgun proteomics.
Drug discovery today 2005;10(10):719-25.
2005: Yong Cai; Jingji Jin; Laurence Florens; Selene K Swanson; Thomas Kusch; Bing Li; Jerry L Workman; Michael Washburn; Ronald C Conaway; Joan Weliky Conaway
The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes.
The Journal of biological chemistry 2005;280(14):13665-70.
2005: Wei-Jong Shia; Shigehiro Osada; Laurence Florens; Selene K Swanson; Michael Washburn; Jerry L Workman
Characterization of the yeast trimeric-SAS acetyltransferase complex.
The Journal of biological chemistry 2005;280(12):11987-94.
2005: Joan Weliky Conaway; Laurence Florens; Shigeo Sato; Chieri Tomomori-Sato; Tari J Parmely; Tingting Yao; Selene K Swanson; Charles A S Banks; Michael Washburn; Ronald C Conaway
The mammalian Mediator complex.
FEBS letters 2005;579(4):904-8.
2005: Kenneth K Lee; Laurence Florens; Selene K Swanson; Michael Washburn; Jerry L Workman
The deubiquitylation activity of Ubp8 is dependent upon Sgf11 and its association with the SAGA complex.
Molecular and cellular biology 2005;25(3):1173-82.
2004: Thomas Kusch; Laurence Florens; W Hayes Macdonald; Selene K Swanson; Robert L Glaser; John R Yates; Susan M Abmayr; Michael Washburn; Jerry L Workman
Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions.
Science (New York, N.Y.) 2004;306(5704):2084-7.
2004: K K Lee; Philippe Prochasson; Laurence Florens; Selene K Swanson; Michael Washburn; Jerry L Workman
Proteomic analysis of chromatin-modifying complexes in Saccharomyces cerevisiae identifies novel subunits.
Biochemical Society transactions 2004;32(Pt 6):899-903.
2004: Shigeo Sato; Chieri Tomomori-Sato; Tari J Parmely; Laurence Florens; Boris Zybailov; Selene K Swanson; Charles A S Banks; Jingji Jin; Yong Cai; Michael Washburn; Joan Weliky Conaway; Ronald C Conaway
A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology.
Molecular cell 2004;14(5):685-91.