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Safiyh Taghavi

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Luen-Luen Li; Safiyh Taghavi; Javier A Izquierdo; Daniel van der Lelie
Complete genome sequence of Clostridium sp. strain BNL1100, a cellulolytic mesophile isolated from corn stover.
Jack Gilbert; Luen-Luen Li; Sean M McCorkle; Safiyh Taghavi; Susannah Tringe; Daniel van der Lelie
Bioprospecting metagenomics for new glycoside hydrolases.
Daniel van der Lelie; William S Adney; Shi-You Ding; Bryon S Donohoe; Michael E Himmel; Luen-Luen Li; Stephanie A Malfatti; Sean M McCorkle; Denise C Monteleone; Safiyh Taghavi; Susannah G Tringe
The metagenome of an anaerobic microbial community decomposing poplar wood chips.

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All Publications

2012: Luen-Luen Li; Safiyh Taghavi; Javier A Izquierdo; Daniel van der Lelie
Complete genome sequence of Clostridium sp. strain BNL1100, a cellulolytic mesophile isolated from corn stover.
Journal of bacteriology 2012;194(24):6982-3.
2012: Jack Gilbert; Luen-Luen Li; Sean M McCorkle; Safiyh Taghavi; Susannah Tringe; Daniel van der Lelie
Bioprospecting metagenomics for new glycoside hydrolases.
Methods in molecular biology (Clifton, N.J.) 2012;908():141-51.
2012: Daniel van der Lelie; William S Adney; Shi-You Ding; Bryon S Donohoe; Michael E Himmel; Luen-Luen Li; Stephanie A Malfatti; Sean M McCorkle; Denise C Monteleone; Safiyh Taghavi; Susannah G Tringe
The metagenome of an anaerobic microbial community decomposing poplar wood chips.
PloS one 2012;7(5):e36740.
2011: Nele Weyens; Sascha Truyens; Eline Saenen; Jana Boulet; Joke Dupae; Safiyh Taghavi; Daniel van der Lelie; Robert Carleer; Jaco Vangronsveld
Endophytes and their potential to deal with co-contamination of organic contaminants (toluene) and toxic metals (nickel) during phytoremediation.
International journal of phytoremediation 2011;13(3):244-55.
2011: Xiao Wu; Sébastien Monchy; Safiyh Taghavi; Wei Zhu; Juan Ramos; Daniel van der Lelie
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.
FEMS microbiology reviews 2011;35(2):299-323.
2011: Luen-Luen Li; Sean M McCorkle; David A Mead; Safiyh Taghavi; Susannah G Tringe; Yian-Biao Zhang; William S Adney; Michael G Blewitt; Phillip Brumm; Roman Brunecky; Colleen Drinkwater; Michael E Himmel; Daniel van der Lelie
Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases.
Biotechnology for biofuels 2011;4(1):23.
2010: Dev Chidambaram; Tom Hennebel; Safiyh Taghavi; Jan Mast; Nico Boon; Willy Verstraete; Daniel van der Lelie; Jeffrey P Fitts
Concomitant microbial generation of palladium nanoparticles and hydrogen to immobilize chromate.
Environmental science & technology 2010;44(19):7635-40.
2010: Nele Weyens; Sascha Truyens; Joke Dupae; Lee Newman; Safiyh Taghavi; Daniel van der Lelie; Robert Carleer; Jaco Vangronsveld
Potential of the TCE-degrading endophyte Pseudomonas putida W619-TCE to improve plant growth and reduce TCE phytotoxicity and evapotranspiration in poplar cuttings.
Environmental pollution (Barking, Essex : 1987) 2010;158(9):2915-9.
2010: Safiyh Taghavi; Daniel van der Lelie; Adam Hoffman; Yian-Biao Zhang; Michael D Walla; Jaco Vangronsveld; Lee Newman; Sébastien Monchy
Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638.
PLoS genetics 2010;6(5):e1000943.
2010: Paul J Janssen; Rob Van Houdt; Hugo Moors; Pieter Monsieurs; Nicolas Morin; Arlette Michaux; Mohammed A Benotmane; Natalie Leys; Tatiana Vallaeys; Alla Lapidus; Sébastien Monchy; Claudine Médigue; Safiyh Taghavi; Sean McCorkle; John Dunn; Daniël van der Lelie; Max Mergeay
The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.
PloS one 2010;5(5):e10433.
2009: Nele Weyens; Daniel van der Lelie; Tom Artois; Karen Smeets; Safiyh Taghavi; Lee Newman; Robert Carleer; Jaco Vangronsveld
Bioaugmentation with engineered endophytic bacteria improves contaminant fate in phytoremediation.
Environmental science & technology 2009;43(24):9413-8.
2009: Nele Weyens; Safiyh Taghavi; Tanja Barac; Daniel van der Lelie; Jana Boulet; Tom Artois; Robert Carleer; Jaco Vangronsveld
Bacteria associated with oak and ash on a TCE-contaminated site: characterization of isolates with potential to avoid evapotranspiration of TCE.
Environmental science and pollution research international 2009;16(7):830-43.
2009: Nele Weyens; Daniel van der Lelie; Safiyh Taghavi; Lee Newman; Jaco Vangronsveld
Exploiting plant-microbe partnerships to improve biomass production and remediation.
Trends in biotechnology 2009;27(10):591-8.
2009: Yian-Biao Zhang; Sébastien Monchy; Bill Greenberg; Max Mergeay; Oleg Gang; Safiyh Taghavi; Daniel van der Lelie
ArsR arsenic-resistance regulatory protein from Cupriavidus metallidurans CH34.
Antonie van Leeuwenhoek 2009;96(2):161-70.
2009: Safiyh Taghavi; Celine Lesaulnier; Sebastien Monchy; Ruddy Wattiez; Max Mergeay; Daniel van der Lelie
Lead(II) resistance in Cupriavidus metallidurans CH34: interplay between plasmid and chromosomally-located functions.
Antonie van Leeuwenhoek 2009;96(2):171-82.
2009: Tanja Barac; Nele Weyens; Licy Oeyen; Safiyh Taghavi; Daniel van der Lelie; Dirk Dubin; Marco Spliet; Jaco Vangronsveld
Field note: hydraulic containment of a BTEX plume using poplar trees.
International journal of phytoremediation 2009;11(5):416-24.
2009: Robert P Ryan; Sebastien Monchy; Massimiliano Cardinale; Safiyh Taghavi; Lisa Crossman; Matthew B Avison; Gabriele Berg; Daniel van der Lelie; J Maxwell Dow
The versatility and adaptation of bacteria from the genus Stenotrophomonas.
Nature reviews. Microbiology 2009;7(7):514-25.
2009: Nele Weyens; Daniel van der Lelie; Safiyh Taghavi; Jaco Vangronsveld
Phytoremediation: plant-endophyte partnerships take the challenge.
Current opinion in biotechnology 2009;20(2):248-54.
2009: Safiyh Taghavi; Craig Garafola; Sébastien Monchy; Lee Newman; Adam Hoffman; Nele Weyens; Tanja Barac; Jaco Vangronsveld; Daniel van der Lelie
Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.
Applied and environmental microbiology 2009;75(3):748-57.
2009: Luen-Luen Li; Sean R McCorkle; Sebastien Monchy; Safiyh Taghavi; Daniel van der Lelie
Bioprospecting metagenomes: glycosyl hydrolases for converting biomass.
Biotechnology for biofuels 2009;2():10.
2008: David Moreels; Garry Crosson; Craig Garafola; Denise C Monteleone; Safiyh Taghavi; Jeffrey P Fitts; Daniel van der Lelie
Microbial community dynamics in uranium contaminated subsurface sediments under biostimulated conditions with high nitrate and nickel pressure.
Environmental science and pollution research international 2008;15(6):481-91.
2008: Celine Lesaulnier; Dimitris Papamichail; Sean McCorkle; Bernard Ollivier; Steven Skiena; Safiyh Taghavi; Donald Zak; Daniel van der Lelie
Elevated atmospheric CO2 affects soil microbial diversity associated with trembling aspen.
Environmental microbiology 2008;10(4):926-41.
2008: Sophie Vanhulle; Marie Trovaslet; Estelle Enaud; Mathias Lucas; Safiyh Taghavi; Daniel van der Lelie; Benoit van Aken; Magali Foret; Rob C A Onderwater; Dirk Wesenberg; Spiros Agathos; Yves-Jacques Schneider; Anne-Marie Corbisier
Decolorization, cytotoxicity, and genotoxicity reduction during a combined ozonation/fungal treatment of dye-contaminated wastewater.
Environmental science & technology 2008;42(2):584-9.
2007: Sébastien Monchy; Mohammed A Benotmane; Paul Janssen; Tatiana Vallaeys; Safiyh Taghavi; Daniel van der Lelie; Max Mergeay
Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans are specialized in the maximal viable response to heavy metals.
Journal of bacteriology 2007;189(20):7417-25.
2006: Sébastien Monchy; Mohammed A Benotmane; Ruddy Wattiez; Sébastien van Aelst; Vanessa Auquier; Brigitte Borremans; Max Mergeay; Safiyh Taghavi; Daniel van der Lelie; Tatiana Vallaeys
Transcriptomic and proteomic analyses of the pMOL30-encoded copper resistance in Cupriavidus metallidurans strain CH34.
Microbiology (Reading, England) 2006;152(Pt 6):1765-76.
2006: Daniel van der Lelie; Celine Lesaulnier; Sean R McCorkle; Joke Geets; Safiyh Taghavi; John Dunn
Use of single-point genome signature tags as a universal tagging method for microbial genome surveys.
Applied and environmental microbiology 2006;72(3):2092-101.
2006: Chiara Mastretta; Lee Newman; Safiyh Taghavi; Tanja Barac; Jaco Vangronsveld; Daniel van der Lelie
Endophytic bacteria and their potential application to improve the phytoremediation of contaminated environments.
Biotechnology & genetic engineering reviews 2006;23():175-207.
2005: Safiyh Taghavi; Tanja Barac; Bill Greenberg; Brigitte Borremans; Jaco Vangronsveld; Daniel van der Lelie
Horizontal gene transfer to endogenous endophytic bacteria from poplar improves phytoremediation of toluene.
Applied and environmental microbiology 2005;71(12):8500-5.
2005: Peng Chen; Bill Greenberg; Safiyh Taghavi; Christine Romano; Daniel van der Lelie; Chuan He
An exceptionally selective lead(II)-regulatory protein from Ralstonia metallidurans: development of a fluorescent lead(II) probe.
Angewandte Chemie (International ed. in English) 2005;44(18):2715-9.
2004: Tanja Barac; Safiyh Taghavi; Brigitte Borremans; Ann Provoost; Licy Oeyen; Jan V Colpaert; Jaco Vangronsveld; Daniel van der Lelie
Engineered endophytic bacteria improve phytoremediation of water-soluble, volatile, organic pollutants.
Nature biotechnology 2004;22(5):583-8.
2003: Max Mergeay; Sébastien Monchy; Tatiana Vallaeys; Vanessa Auquier; Abderrafi Benotmane; Philippe Bertin; Safiyh Taghavi; John Dunn; Daniel van der Lelie; Ruddy Wattiez
Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: towards a catalogue of metal-responsive genes.
FEMS microbiology reviews 2003;27(2-3):385-410.
2003: Zita Snellinx; Safiyh Taghavi; Jaco Vangronsveld; Daniel van der Lelie
Microbial consortia that degrade 2,4-DNT by interspecies metabolism: isolation and characterisation.
Biodegradation 2003;14(1):19-29.
2002: Zita Snellinx; Ales Nepovím; Safiyh Taghavi; Jaco Vangronsveld; Tomás Vanek; Daniel van der Lelie
Biological remediation of explosives and related nitroaromatic compounds.
Environmental science and pollution research international 2002;9(1):48-61.
2001: Safiyh Taghavi; H Delanghe; C Lodewyckx; Max Mergeay; Daniel van der Lelie
Nickel-resistance-based minitransposons: new tools for genetic manipulation of environmental bacteria.
Applied and environmental microbiology 2001;67(2):1015-9.
1998: A Gilis; Philippe Corbisier; W Baeyens; Safiyh Taghavi; Max Mergeay; Daniel van der Lelie
Effect of the siderophore alcaligin E on the bioavailability of Cd to Alcaligenes eutrophus CH34.
Journal of industrial microbiology & biotechnology 1998;20(1):61-8.
1997: Safiyh Taghavi; Max Mergeay; D Nies; Daniel van der Lelie
Alcaligenes eutrophus as a model system for bacterial interactions with heavy metals in the environment.
Research in microbiology 1997;148(6):536-51.
1997: Safiyh Taghavi; Max Mergeay; Daniel van der Lelie
Genetic and physical maps of the Alcaligenes eutrophus CH34 megaplasmid pMOL28 and its derivative pMOL50 obtained after temperature-induced mutagenesis and mortality.
Plasmid 1997;37(1):22-34.
1996: Safiyh Taghavi; A Provoost; Max Mergeay; Daniel van der Lelie
Identification of a partition and replication region in the Alcaligenes eutrophus megaplasmid pMOL28.
Molecular & general genetics : MGG 1996;250(2):169-79.
1994: Safiyh Taghavi; Daniel van der Lelie; Max Mergeay
Electroporation of Alcaligenes eutrophus with (mega) plasmids and genomic DNA fragments.
Applied and environmental microbiology 1994;60(10):3585-91.
1994: J M Collard; Philippe Corbisier; Ludo Diels; Q Dong; C Jeanthon; Max Mergeay; Safiyh Taghavi; Daniel van der Lelie; A Wilmotte; S Wuertz
Plasmids for heavy metal resistance in Alcaligenes eutrophus CH34: mechanisms and applications.
FEMS microbiology reviews 1994;14(4):405-14.
1993: J M Collard; A Provoost; Safiyh Taghavi; Max Mergeay
A new type of Alcaligenes eutrophus CH34 zinc resistance generated by mutations affecting regulation of the cnr cobalt-nickel resistance system.
Journal of bacteriology 1993;175(3):779-84.
1992: Q Dong; A Sadouk; Daniel van der Lelie; Safiyh Taghavi; A Ferhat; J M Nuyten; B Borremans; Max Mergeay; A Toussaint
Cloning and sequencing of IS1086, an Alcaligenes eutrophus insertion element related to IS30 and IS4351.
Journal of bacteriology 1992;174(24):8133-8.