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Hidemasa Bono

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Hidemasa Bono; Ken Yagi; Yutaka Nakachi; Itoshi Nikaido; Yasushi Okazaki
[Analysis of gene networks during adipogenesis and osteoblastgenesis focusing on the crosstalk and redundant pathways].
Kirk W Beisel; Toshiyuki Shiraki; Ken A Morris; Celine Pompeia; Anne E White-Olson; Takahiro Arakawa; Hidemasa Bono; Jun Kawai; Yoshihide Hayashizaki; piero carninci
Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library.
Stefano Gustincich; Massimo Contini; manuela gariboldi; Michelino Puopolo; Koji Kadota; Hidemasa Bono; Julianna LeMieux; Pamela Walsh; piero carninci; Yoshihide Hayashizaki; Yasushi Okazaki; Elio Raviola
Gene discovery in genetically labeled single dopaminergic neurons of the retina.

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2004: Hidemasa Bono; Ken Yagi; Yutaka Nakachi; Itoshi Nikaido; Yasushi Okazaki
[Analysis of gene networks during adipogenesis and osteoblastgenesis focusing on the crosstalk and redundant pathways].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):2965-9.
2004: Kirk W Beisel; Toshiyuki Shiraki; Ken A Morris; Celine Pompeia; Anne E White-Olson; Takahiro Arakawa; Hidemasa Bono; Jun Kawai; Yoshihide Hayashizaki; piero carninci
Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library.
Genomics 2004;83(6):1012-23.
2004: Stefano Gustincich; Massimo Contini; manuela gariboldi; Michelino Puopolo; Koji Kadota; Hidemasa Bono; Julianna LeMieux; Pamela Walsh; piero carninci; Yoshihide Hayashizaki; Yasushi Okazaki; Elio Raviola
Gene discovery in genetically labeled single dopaminergic neurons of the retina.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(14):5069-74.
2004: Takeya Kasukawa; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Hideo Matsuda
MaXML: mouse annotation XML.
In silico biology 2004;4(1):7-15.
2003: manuela gariboldi; Monica Spinola; Silvano Milani; Carmen Pignatiello; Koji Kadota; Hidemasa Bono; Yoshihide Hayashizaki; Tommaso A Dragani; Yasushi Okazaki
Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.
Carcinogenesis 2003;24(11):1819-26.
2003: Takeya Kasukawa; Masaaki Furuno; Itoshi Nikaido; Hidemasa Bono; David A Hume; Carol Bult; David P Hill; Richard Baldarelli; Julian Gough; Alexander Kanapin; Hideo Matsuda; Lynn M Schriml; Yoshihide Hayashizaki; Yasushi Okazaki; John Quackenbush
Development and evaluation of an automated annotation pipeline and cDNA annotation system.
Genome research 2003;13(6B):1542-51.
2003: Lynn M Schriml; David P Hill; Judith A Blake; Hidemasa Bono; Anthony Wynshaw-Boris; William J Pavan; Brian Z Ring; Kirk W Beisel; Mitsutoshi Setou; Yasushi Okazaki
Human disease genes and their cloned mouse orthologs: exploration of the FANTOM2 cDNA sequence data set.
Genome research 2003;13(6B):1496-500.
2003: Yuka Kawasawa; Louise M McKenzie; David P Hill; Hidemasa Bono; Masashi Yanagisawa
G protein-coupled receptor genes in the FANTOM2 database.
Genome research 2003;13(6B):1466-77.
2003: Itoshi Nikaido; Chika Saito; Yosuke Mizuno; Makiko Meguro; Hidemasa Bono; Moritoshi Kadomura; Tomohiro Kono; Gerard A J Morris; Paul A Lyons; Mitsuo Oshimura; Yoshihide Hayashizaki; Yasushi Okazaki
Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling.
Genome research 2003;13(6B):1402-9.
2003: Stefano Gustincich; Serge Batalov; Kirk W Beisel; Hidemasa Bono; piero carninci; Colin F Fletcher; Sean M Grimmond; Nobutaka Hirokawa; Erich D Jarvis; Tim Jegla; Yuka Kawasawa; Julianna LeMieux; Harukata Miki; Elio Raviola; Rohan Teasdale; Naoko Tominaga; Ken Yagi; Andreas Zimmer; Yoshihide Hayashizaki; Yasushi Okazaki
Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
Genome research 2003;13(6B):1395-401.
2003: Christine A Wells; Timothy Ravasi; Razvan Sultana; Ken Yagi; piero carninci; Hidemasa Bono; Geoffrey J Faulkner; Yasushi Okazaki; John Quackenbush; David A Hume; Paul A Lyons
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineage.
Genome research 2003;13(6B):1360-5.
2003: Sean M Grimmond; Kevin C Miranda; Zheng Yuan; Melissa J Davis; David A Hume; Ken Yagi; Naoko Tominaga; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Rohan Teasdale
The mouse secretome: functional classification of the proteins secreted into the extracellular environment.
Genome research 2003;13(6B):1350-9.
2003: Hidemasa Bono; Itoshi Nikaido; Takeya Kasukawa; Yoshihide Hayashizaki; Yasushi Okazaki
Comprehensive analysis of the mouse metabolome based on the transcriptome.
Genome research 2003;13(6B):1345-9.
2003: Hidemasa Bono; Ken Yagi; Takeya Kasukawa; Itoshi Nikaido; Naoko Tominaga; Rika Miki; Yosuke Mizuno; Yasuhiro Tomaru; Hitoshi Goto; Hiroyuki Nitanda; Daisuke Shimizu; Hirochika Makino; Tomoyuki Morita; Junshin Fujiyama; Takehito Sakai; Takashi Shimoji; David A Hume; Yoshihide Hayashizaki; Yasushi Okazaki
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.
Genome research 2003;13(6B):1318-23.
2003: Hidemasa Bono; Takeya Kasukawa; Masaaki Furuno; Yoshihide Hayashizaki; Yasushi Okazaki
[FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones].
Seikagaku. The Journal of Japanese Biochemical Society 2003;75(2):149-52.
2002: Hiromi Kochiwa; Ryosuke Suzuki; Takanori Washio; Rintaro Saito; Hidemasa Bono; piero carninci; Yasushi Okazaki; Rika Miki; Yoshihide Hayashizaki; Masaru Tomita
Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.
Genome research 2002;12(8):1286-93.
2002: Hidemasa Bono; Yasushi Okazaki
Functional transcriptomes: comparative analysis of biological pathways and processes in eukaryotes to infer genetic networks among transcripts.
Current opinion in structural biology 2002;12(3):355-61.
2002: Hidemasa Bono; Takeya Kasukawa; Yoshihide Hayashizaki; Yasushi Okazaki
READ: RIKEN Expression Array Database.
Nucleic acids research 2002;30(1):211-3.
2002: Hidemasa Bono; Takeya Kasukawa; Masaaki Furuno; Yoshihide Hayashizaki; Yasushi Okazaki
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.
Nucleic acids research 2002;30(1):116-8.
2001: Harukazu Suzuki; Y Fukunishi; I Kagawa; Rintaro Saito; H Oda; T Endo; Shinji Kondo; Hidemasa Bono; Yasushi Okazaki; Yoshihide Hayashizaki
Protein-protein interaction panel using mouse full-length cDNAs.
Genome research 2001;11(10):1758-65.
2001: Rika Miki; Koji Kadota; Hidemasa Bono; Yosuke Mizuno; Yasuhiro Tomaru; piero carninci; Masayoshi Itoh; Kazuhiro Shibata; Jun Kawai; H Konno; S Watanabe; K Sato; Y Tokusumi; N Kikuchi; Y Ishii; Yohei Hamaguchi; Itaru Nishizuka; Hitoshi Goto; Hiroyuki Nitanda; S Satomi; A Yoshiki; M Kusakabe; Joe L DeRisi; Michael B Eisen; Vishwanath R Iyer; P O Brown; Masami Muramatsu; Hiroshi Shimada; Yasushi Okazaki; Yoshihide Hayashizaki
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2199-204.
2001: Koji Kadota; Rika Miki; Hidemasa Bono; K Shimizu; Yasushi Okazaki; Yoshihide Hayashizaki
Preprocessing implementation for microarray (PRIM): an efficient method for processing cDNA microarray data.
Physiological genomics 2001;4(3):183-8.