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Tin Wee Tan

Research Profile

Occupations

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Procedures

Protein Sequence Analysis

Activities & Behaviors

Genes & Molecular Sequences

Amino Acid Sequences

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Asia

Chemicals & Drugs

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Publications

TOP 3
Yongli Hu; Paul Thiam Joo Tan; Tin Wee Tan; J Thomas August; Asif M Khan
Dissecting the Dynamics of HIV-1 Protein Sequence Diversity.
KEUN JUNG; Asif M Khan; Francois Lemonnier; Ernesto Marques; Olivo Miotto; Eduardo J M Nascimento; Jerome Salmon; Gregory G Simon; Benjamin Yong Liang Tan; Tin Wee Tan; Vladimir Brusic; Rafael Dhalia; Yongli Hu; Thomas J August
West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands.
Shoba Ranganathan; Tin Wee Tan; Sissades Tongsima; Jonathan Chan; Christian Schönbach
Advances in translational bioinformatics and population genomics in the Asia-Pacific.

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All Publications

2013: Yongli Hu; Paul Thiam Joo Tan; Tin Wee Tan; J Thomas August; Asif M Khan
Dissecting the Dynamics of HIV-1 Protein Sequence Diversity.
PloS one 2013;8(4):e59994.
2012: KEUN JUNG; Asif M Khan; Francois Lemonnier; Ernesto Marques; Olivo Miotto; Eduardo J M Nascimento; Jerome Salmon; Gregory G Simon; Benjamin Yong Liang Tan; Tin Wee Tan; Vladimir Brusic; Rafael Dhalia; Yongli Hu; Thomas J August
West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands.
Journal of virology 2012;86(14):7616-24.
2012: Shoba Ranganathan; Tin Wee Tan; Sissades Tongsima; Jonathan Chan; Christian Schönbach
Advances in translational bioinformatics and population genomics in the Asia-Pacific.
BMC genomics 2012;13 Suppl 7():S1.
2012: Christian Schönbach; Tin Wee Tan; Sissades Tongsima; Vladimir Brusic; Jonathan Chan; Shoba Ranganathan
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.
BMC bioinformatics 2012;13 Suppl 17():S1.
2011: Shoba Ranganathan; Burkhard Rost; Christian Schönbach; Janet Kelso; Sheila Nathan; Tin Wee Tan
Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.
BMC bioinformatics 2011;12 Suppl 13():S1.
2011: Christian Schönbach; Tin Wee Tan; Janet Kelso; Sheila Nathan; Burkhard Rost; Shoba Ranganathan
InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.
BMC genomics 2011;12 Suppl 3():S1.
2010: Tin Wee Tan; Joo Chuan Tong; Asif M Khan; Mark de Silva; Kuan Siong Lim; Shoba Ranganathan
Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi).
BMC genomics 2010;11 Suppl 4():S27.
2010: Shoba Ranganathan; Christian Schönbach; Kenta Nakai; Tin Wee Tan
Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010).
BMC genomics 2010;11 Suppl 4():S1.
2010: Daniel Ming Ming Tay; Kunde Ramamoorthy Govindarajan; Asif M Khan; Terenze Yao Rui Ong; Hanif M Samad; Wei Wei Soh; Minyan Tong; Fan Zhang; Tin Wee Tan
T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System.
BMC bioinformatics 2010;11 Suppl 7():S4.
2010: Christian Schönbach; Kenta Nakai; Tin Wee Tan; Shoba Ranganathan
InCoB2010 - 9th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010.
BMC bioinformatics 2010;11 Suppl 7():S1.
2010: Shen Jean Lim; Tin Wee Tan; Joo Chuan Tong
Computational Epigenetics: the new scientific paradigm.
Bioinformation 2010;4(7):331-7.
2010: Ana Lisa V Gomes; Lawrence J K Wee; Asif M Khan; Laura H V G Gil; Ernesto Marques; Carlos E Calzavara-Silva; Tin Wee Tan
Classification of dengue fever patients based on gene expression data using support vector machines.
PloS one 2010;5(6):e11267.
2010: Olivo Miotto; A T Heiny; Randy Albrecht; Adolfo García-Sastre; Tin Wee Tan; Thomas J August; Vladimir Brusic
Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains.
PloS one 2010;5(2):e9025.
2009: Khar Heng Choo; Tin Wee Tan; Shoba Ranganathan
A comprehensive assessment of N-terminal signal peptides prediction methods.
BMC bioinformatics 2009;10 Suppl 15():S2.
2009: Shen Jean Lim; Asif M Khan; Mark De Silva; Kuan Siong Lim; Yongli Hu; Chay Hoon Tan; Tin Wee Tan
The implementation of e-learning tools to enhance undergraduate bioinformatics teaching and learning: a case study in the National University of Singapore.
BMC bioinformatics 2009;10 Suppl 15():S12.
2009: Lawrence J K Wee; Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
A multi-factor model for caspase degradome prediction.
BMC genomics 2009;10 Suppl 3():S6.
2009: Tin Wee Tan; Shen Jean Lim; Asif M Khan; Shoba Ranganathan
A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era.
BMC genomics 2009;10 Suppl 3():S36.
2009: Shoba Ranganathan; Frank Eisenhaber; Joo Chuan Tong; Tin Wee Tan
Extending Asia Pacific bioinformatics into new realms in the "-omics" era.
BMC genomics 2009;10 Suppl 3():S1.
2009: Qi Ying Koo; Asif M Khan; KEUN JUNG; Shweta Ramdas; Olivo Miotto; Tin Wee Tan; Vladimir Brusic; Jerome Salmon; Thomas J August
Conservation and variability of West Nile virus proteins.
PloS one 2009;4(4):e5352.
2008: Unitsa Sangket; Amornrat Phongdara; Wilaiwan Chotigeat; Darran Nathan; Woo-Yeon Kim; Jong Bhak; Chumpol Ngamphiw; Sissades Tongsima; Asif M Khan; Honghuang Lin; Tin Wee Tan
Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries.
Bioinformatics (Oxford, England) 2008;24(2):299-301.
2008: Shoba Ranganathan; Wen-Lian Hsu; Ueng-Cheng Yang; Tin Wee Tan
Emerging strengths in Asia Pacific bioinformatics.
BMC bioinformatics 2008;9 Suppl 12():S1.
2008: Asif M Khan; Olivo Miotto; Eduardo J M Nascimento; Kellathur N Srinivasan; AT Heiny; Guang Lan Zhang; Ernesto Marques; Tin Wee Tan; Vladimir Brusic; Jerome Salmon; Thomas J August
Conservation and variability of dengue virus proteins: implications for vaccine design.
PLoS neglected tropical diseases 2008;2(8):e272.
2008: Olivo Miotto; Tin Wee Tan; Vladimir Brusic
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses.
BMC bioinformatics 2008;9 Suppl 1():S7.
2008: Olivo Miotto; At Heiny; Tin Wee Tan; Thomas J August; Vladimir Brusic
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis.
BMC bioinformatics 2008;9 Suppl 1():S18.
2008: Shoba Ranganathan; Michael Gribskov; Tin Wee Tan
Bioinformatics research in the Asia Pacific: a 2007 update.
BMC bioinformatics 2008;9 Suppl 1():S1.
2007: Lawrence J K Wee; Tin Wee Tan; Shoba Ranganathan
CASVM: web server for SVM-based prediction of caspase substrates cleavage sites.
Bioinformatics (Oxford, England) 2007;23(23):3241-3.
2007: Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
Methods and protocols for prediction of immunogenic epitopes.
Briefings in bioinformatics 2007;8(2):96-108.
2007: Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
In silico grouping of peptide/HLA class I complexes using structural interaction characteristics.
Bioinformatics (Oxford, England) 2007;23(2):177-83.
2007: AT Heiny; Olivo Miotto; Kellathur N Srinivasan; Asif M Khan; Guang Lan Zhang; Vladimir Brusic; Tin Wee Tan; Thomas J August
Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets.
PloS one 2007;2(11):e1190.
2007: Joo Chuan Tong; Zong Hong Zhang; Thomas J August; Vladimir Brusic; Tin Wee Tan; Shoba Ranganathan
In silico characterization of immunogenic epitopes presented by HLA-Cw*0401.
Immunome research 2007;3():7.
2006: Asif M Khan; Olivo Miotto; AT Heiny; Jerome Salmon; Kellathur N Srinivasan; Eduardo J M Nascimento; Ernesto Marques; Vladimir Brusic; Tin Wee Tan; Thomas J August
A systematic bioinformatics approach for selection of epitope-based vaccine targets.
Cellular immunology 2006;244(2):141-7.
2006: Durgaprasad Bollina; Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan
ASGS: an alternative splicing graph web service.
Nucleic acids research 2006;34(Web Server issue):W444-7.
2006: Joo Chuan Tong; Guang Lan Zhang; Tin Wee Tan; Thomas J August; Vladimir Brusic; Shoba Ranganathan
Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.
Bioinformatics (Oxford, England) 2006;22(10):1232-8.
2006: Joo Chuan Tong; Tin Wee Tan; Animesh Sinha; Shoba Ranganathan
Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6-associated pemphigus vulgaris.
BMC bioinformatics 2006;7 Suppl 5():S7.
2006: Asif M Khan; AT Heiny; Kenneth X Lee; Kellathur N Srinivasan; Tin Wee Tan; Thomas J August; Vladimir Brusic
Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus.
BMC bioinformatics 2006;7 Suppl 5():S4.
2006: Lawrence J K Wee; Tin Wee Tan; Shoba Ranganathan
SVM-based prediction of caspase substrate cleavage sites.
BMC bioinformatics 2006;7 Suppl 5():S14.
2006: Joo Chuan Tong; Lesheng Kong; Tin Wee Tan; Shoba Ranganathan
MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions.
Applied bioinformatics 2006;5(2):111-4.
2005: Paul Thiam Joo Tan; Kellathur N Srinivasan; Seng Hong Seah; Judice L Y Koh; Tin Wee Tan; Shoba Ranganathan; Vladimir Brusic
Accurate prediction of scorpion toxin functional properties from primary structures.
Journal of molecular graphics & modelling 2005;24(1):17-24.
2005: Olivo Miotto; Tin Wee Tan; Vladimir Brusic
Supporting the curation of biological databases with reusable text mining.
Genome informatics. International Conference on Genome Informatics 2005;16(2):32-44.
2005: Khar Heng Choo; Tin Wee Tan; Shoba Ranganathan
SPdb--a signal peptide database.
BMC bioinformatics 2005;6():249.
2004: Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan
DEDB: a database of Drosophila melanogaster exons in splicing graph form.
BMC bioinformatics 2004;5():189.
2004: Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
Modeling the structure of bound peptide ligands to major histocompatibility complex.
Protein science : a publication of the Protein Society 2004;13(9):2523-32.
2004: Lesheng Kong; Bernett T K Lee; Joo Chuan Tong; Tin Wee Tan; Shoba Ranganathan
SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins.
Nucleic acids research 2004;32(Web Server issue):W356-9.
2004: M Brahmachary; S P T Krishnan; Judice L Y Koh; Asif M Khan; Seng Hong Seah; Tin Wee Tan; Vladimir Brusic; Vladimir Bajic
ANTIMIC: a database of antimicrobial sequences.
Nucleic acids research 2004;32(Database issue):D586-9.
2004: Vivek Gopalan; Tin Wee Tan; Bernett T K Lee; Shoba Ranganathan
Xpro: database of eukaryotic protein-encoding genes.
Nucleic acids research 2004;32(Database issue):D59-63.
2003: Bernett T K Lee; Tin Wee Tan; Shoba Ranganathan
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences.
Nucleic acids research 2003;31(13):3533-6.
2003: Kunde Ramamoorthy Govindarajan; Pandjassarame Kangueane; Tin Wee Tan; Shoba Ranganathan
MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules.
Bioinformatics (Oxford, England) 2003;19(2):309-10.
2003: Vivek Gopalan; Tin Wee Tan; Shoba Ranganathan
XdomView: protein domain and exon position visualization.
Bioinformatics (Oxford, England) 2003;19(1):159-60.
2002: Shoba Ranganathan; Subramanian Subbiah; Tin Wee Tan
APBioNet: the Asia-Pacific regional consortium for bioinformatics.
Applied bioinformatics 2002;1(2):101-5.
2001: Meena Kishore Sakharkar; Tin Wee Tan; Sandro J de Souza
Generation of a database containing discordant intron positions in eukaryotic genes (MIDB).
Bioinformatics (Oxford, England) 2001;17(8):671-5.
2000: Meena Kishore Sakharkar; Pandjassarame Kangueane; T W Woon; Tin Wee Tan; Prasanna R Kolatkar; M Long; Sandro J de Souza
IE-Kb: intron exon knowledge base.
Bioinformatics (Oxford, England) 2000;16(12):1151-2.
2000: Meena Kishore Sakharkar; M Long; Tin Wee Tan; Sandro J de Souza
ExInt: an Exon/Intron database.
Nucleic acids research 2000;28(1):191-2.
1998: Prasanna R Kolatkar; Meena Kishore Sakharkar; T C Roderic; B K Kiong; Limsoon Wong; Tin Wee Tan; Subramanian Subbiah
Integration of bioInformatics tools at the National University of Singapore (NUS).
Studies in health technology and informatics 1998;52 Pt 1():356-60.
1998: Prasanna R Kolatkar; Meena Kishore Sakharkar; C R Tse; B K Kiong; Limsoon Wong; Tin Wee Tan; Subramanian Subbiah
Development of software tools at BioInformatics Centre (BIC) at the National University of Singapore (NUS).
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():735-46.
1995: K C Lun; Tin Wee Tan; Ponnampalam Gopalakrishnakone; S Loh
Delivering health information databases on World Wide Web at the National University of Singapore.
Medinfo. MEDINFO 1995;8 Pt 2():1528.
1993: B K Kiong; Tin Wee Tan
A general UNIX interface for biocomputing and network information retrieval software.
Computer applications in the biosciences : CABIOS 1993;9(5):581-6.
1993: B K Kiong; Tin Wee Tan
A hypertext-like approach to navigating through the GCG sequence analysis package.
Computer applications in the biosciences : CABIOS 1993;9(2):211-4.