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Michael Kuhn; Mumna Banchaabouchi; Monica Campillos; Anne-Claude Gavin; Cornelius Gross; Lars Juhl Jensen; Peer Bork
Systematic identification of proteins that elicit drug side effects.
Murat Iskar; Katarzyna H Kaminska; Michael Kuhn; Rainer Pepperkok; Heiko Runz; Vera van Noort; Georg Zeller; Peter Blattmann; Monica Campillos; Anne-Claude Gavin; Peer Bork
Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.
Siegfried Schloissnig; Shinichi Sunagawa; Shamil Sunyaev; Julien Tap; Alison Waller; George M Weinstock; Ana Zhu; Karthik Kota; Jens Roat Kultima; John Martin; Daniel R Mende; Makedonka Mitreva; Manimozhiyan Arumugam; Peer Bork
Genomic variation landscape of the human gut microbiome.

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All Publications

2013: Michael Kuhn; Mumna Banchaabouchi; Monica Campillos; Anne-Claude Gavin; Cornelius Gross; Lars Juhl Jensen; Peer Bork
Systematic identification of proteins that elicit drug side effects.
Molecular systems biology 2013;9():663.
2013: Murat Iskar; Katarzyna H Kaminska; Michael Kuhn; Rainer Pepperkok; Heiko Runz; Vera van Noort; Georg Zeller; Peter Blattmann; Monica Campillos; Anne-Claude Gavin; Peer Bork
Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.
Molecular systems biology 2013;9():662.
2013: Siegfried Schloissnig; Shinichi Sunagawa; Shamil Sunyaev; Julien Tap; Alison Waller; George M Weinstock; Ana Zhu; Karthik Kota; Jens Roat Kultima; John Martin; Daniel R Mende; Makedonka Mitreva; Manimozhiyan Arumugam; Peer Bork
Genomic variation landscape of the human gut microbiome.
Nature 2013;493(7430):45-50.
2013: Alessandro Ori; Oliver Rinner; Victor Solis-Mezarino; Lenore Sparks; Peer Bork; Claudia Escher; Murat Iskar; Huy Khanh Bui; Edward A Lemke; Amparo Andrés-Pons; Niccolò Banterle; Martin Beck
Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines.
Molecular systems biology 2013;9():648.
2013: Vera van Noort; Stefan Amlacher; Manimozhiyan Arumugam; Gert Bange; Bettina Bradatsch; Christopher J Creevey; Sebastian Falk; Ed Hurt; Daniel R Mende; Irmgard Sinning; Peer Bork
Consistent mutational paths predict eukaryotic thermostability.
BMC evolutionary biology 2013;13():7.
2013: Andrea Franceschini; Sune Frankild; Peer Bork; Michael Kuhn; Jianyi Lin; Pablo Minguez; Alexander Roth; Milan Simonovic; Damian Szklarczyk; Christian von Mering; Lars J Jensen
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Nucleic acids research 2013;41(Database issue):D808-15.
2013: Pablo Minguez; Luca Parca; Ivica Letunic; Peer Bork
PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins.
Nucleic acids research 2013;41(Database issue):D306-11.
2013: Clare Pacini; Peer Bork; Emanuel Gonçalves; Francesco Iorio; Murat Iskar; Thomas Klabunde; Julio Saez-Rodriguez
DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data.
Bioinformatics (Oxford, England) 2013;29(1):132-4.
2012: Murat Iskar; Vera van Noort; Georg Zeller; Xing-Ming Zhao; Peer Bork
Drug discovery in the age of systems biology: the rise of computational approaches for data integration.
Current opinion in biotechnology 2012;23(4):609-16.
2012: Wei-Hua Chen; Martin J Lercher; Kalliopi Trachana; Peer Bork
Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age.
Molecular biology and evolution 2012;29(7):1703-6.
2012: Erwin G Zoetendal; Manimozhiyan Arumugam; Carien C G M Booijink; Peer Bork; Willem M de Vos; Jeroen Raes; Freddy J Troost; Bartholomeus van den Bogert; Michiel Wels; Michiel Kleerebezem
The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates.
The ISME journal 2012;6(7):1415-26.
2012: Susanne Haemmerling; S Hentze; Johannes W G Janssen; Anna Jauch; Karin A Koch; Jan O Korbel; Obul R Bandapalli; Claus R Bartram; Wolfgang Behnisch; Michael Bonin; Peer Bork; Tobias Doerks; Ute Grasshoff; Ute Moog; Dirk Reinhardt; Olaf Rieß; Andreas E Kulozik
A 15q24 microdeletion in transient myeloproliferative disease (TMD) and acute megakaryoblastic leukaemia (AMKL) implicates PML and SUMO3 in the leukaemogenesis of TMD/AMKL.
British journal of haematology 2012;157(2):180-7.
2012: Pablo Minguez; Luca Parca; Vera van Noort; Francesca Diella; Anne-Claude Gavin; Manuela Helmer-Citterich; Runjun Kumar; Daniel R Mende; Peer Bork
Deciphering a global network of functionally associated post-translational modifications.
Molecular systems biology 2012;8():599.
2012: Takuji Yamada; Aleksej Zelezniak; Kiran R Patil; Nadia Perchat; Alain Perret; Jeroen Raes; Marcel Salanoubat; Alison S Waller; Jean Weissenbach; Peer Bork
Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.
Molecular systems biology 2012;8():581.
2012: Tobias Doerks; Pablo Minguez; Vera van Noort; Peer Bork
Annotation of the M. tuberculosis hypothetical orfeome: adding functional information to more than half of the uncharacterized proteins.
PloS one 2012;7(4):e34302.
2012: Daniel R Mende; Jeroen Raes; Shinichi Sunagawa; Alison S Waller; Manimozhiyan Arumugam; Michelle M Chan; Aino I Järvelin; Peer Bork
Assessment of metagenomic assembly using simulated next generation sequencing data.
PloS one 2012;7(2):e31386.
2012: Vera van Noort; Ivana Vonkova; Eva Yus; Samuel Bader; Matthew J Betts; Peer Bork; Albert J R Heck; Sebastian Kühner; Runjun Kumar; Tobias Maier; shabaz mohammed; Martina O'Flaherty; Robert B Russell; Vladimir Rybin; Arne Schmeisky; Jan Seebacher; Luis Serrano; Jörg Stülke; Anne-Claude Gavin
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.
Molecular systems biology 2012;8():571.
2012: Sean Powell; Thomas Rattei; Alexander Roth; Damian Szklarczyk; Kalliopi Trachana; Christian von Mering; Tobias Doerks; Lars Jensen; Michael Kuhn; Ivica Letunic; Jean Muller; Roland Arnold; Peer Bork
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic acids research 2012;40(Database issue):D284-9.
2012: Michael Kuhn; Damian Szklarczyk; Christian von Mering; Andrea Franceschini; Lars Juhl Jensen; Peer Bork
STITCH 3: zooming in on protein-chemical interactions.
Nucleic acids research 2012;40(Database issue):D876-80.
2011: Eric Karsenti; Uros Krzic; Fabrice Not; Hiroyuki Ogata; Stéphane Pesant; Jeroen Raes; Emmanuel G Reynaud; Christian Sardet; Michael E Sieracki; Sabrina Speich; Matthew Sullivan; Didier Velayoudon; Jean Weissenbach; Patrick Wincker; Silvia G Acinas; Detlev Arendt; Francesca Benzoni; Peer Bork; Chris Bowler; Jean-Michel Claverie; Colomban De Vargas; Mick Follows; Gaby Gorsky; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Stefanie Kandels-Lewis
A holistic approach to marine eco-systems biology.
PLoS biology 2011;9(10):e1001177.
2011: Kalliopi Trachana; Wei-Hua Chen; Tobias Doerks; Tomas A Larsson; Jean Muller; Sean Powell; Peer Bork
Orthology prediction methods: a quality assessment using curated protein families.
BioEssays : news and reviews in molecular, cellular and developmental biology 2011;33(10):769-80.
2011: Stefan Amlacher; Manimozhiyan Arumugam; Peer Bork; Damien P Devos; Dirk Flemming; Ruth Kunze; Phillip Sarges; Vera van Noort; Ed Hurt
Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile.
Cell 2011;146(2):277-89.
2011: Takuji Yamada; Minoru Kanehisa; Ivica Letunic; Shujiro Okuda; Peer Bork
iPath2.0: interactive pathway explorer.
Nucleic acids research 2011;39(Web Server issue):W412-5.
2011: Ivica Letunic; Peer Bork
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy.
Nucleic acids research 2011;39(Web Server issue):W475-8.
2011: Christopher J Creevey; Tobias Doerks; David A Fitzpatrick; Jeroen Raes; Peer Bork
Universally distributed single-copy genes indicate a constant rate of horizontal transfer.
PloS one 2011;6(8):e22099.
2011: Lucas Brouwers; Murat Iskar; Vera van Noort; Georg Zeller; Peer Bork
Network neighbors of drug targets contribute to drug side-effect similarity.
PloS one 2011;6(7):e22187.
2011: Damian Szklarczyk; Andrea Franceschini; Michael Kuhn; Milan Simonovic; Alexander Roth; Pablo Minguez; Tobias Doerks; Manuel Stark; Jean Muller; Peer Bork; Lars J Jensen; Christian von Mering
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic acids research 2011;39(Database issue):D561-8.
2010: Eoghan D Harrington; Manimozhiyan Arumugam; Jeroen Raes; Peer Bork; David A Relman
SmashCell: a software framework for the analysis of single-cell amplified genome sequences.
Bioinformatics (Oxford, England) 2010;26(23):2979-80.
2010: Manimozhiyan Arumugam; Eoghan D Harrington; Konrad Foerstner; Jeroen Raes; Peer Bork
SmashCommunity: a metagenomic annotation and analysis tool.
Bioinformatics (Oxford, England) 2010;26(23):2977-8.
2010: Mikita Suyama; Eoghan D Harrington; Svetlana Vinokourova; Magnus von Knebel Doeberitz; Osamu Ohara; Peer Bork
A network of conserved co-occurring motifs for the regulation of alternative splicing.
Nucleic acids research 2010;38(22):7916-26.
2010: Oriol Gallego; Matthew J Betts; Jelena Gvozdenovic-Jeremic; Kenji Maeda; Christian Matetzki; Carmen Aguilar-Gurrieri; Pedro Beltran-Alvarez; Stefan Bonn; Carlos Fernández-Tornero; Lars Jensen; Michael Kuhn; Jamie Trott; Vladimir Rybin; Christoph W Müller; Peer Bork; Marko Kaksonen; Robert B Russell; Anne-Claude Gavin
A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae.
Molecular systems biology 2010;6():430.
2010: Lars J Jensen; Peer Bork
Ontologies in quantitative biology: a basis for comparison, integration, and discovery.
PLoS biology 2010;8(5):e1000374.
2010: Ivan A Adzhubei; Steffen Schmidt; Leonid Peshkin; Vasily E Ramensky; Anna Gerasimova; Peer Bork; Alexey S Kondrashov; Shamil R Sunyaev
A method and server for predicting damaging missense mutations.
Nature methods 2010;7(4):248-9.
2010: Kalliopi Trachana; Lars Juhl Jensen; Peer Bork
Evolution and regulation of cellular periodic processes: a role for paralogues.
EMBO reports 2010;11(3):233-8.
2010: Foteini Christodoulou; Florian Raible; Raju Tomer; Oleg Simakov; Kalliopi Trachana; Sebastian Klaus; Heidi Snyman; Gregory J Hannon; Peer Bork; Detlev Arendt
Ancient animal microRNAs and the evolution of tissue identity.
Nature 2010;463(7284):1084-8.
2010: Jean Muller; Christopher J Creevey; Julie D Thompson; Detlev Arendt; Peer Bork
AQUA: automated quality improvement for multiple sequence alignments.
Bioinformatics (Oxford, England) 2010;26(2):263-5.
2010: Murat Iskar; Monica Campillos; Michael Kuhn; Lars Juhl Jensen; Vera van Noort; Peer Bork
Drug-induced regulation of target expression.
PLoS computational biology 2010;6(9):.
2010: Marina V Granovskaia; Lars Jensen; Matthew E Ritchie; Joern Toedling; Ye Ning; Peer Bork; Wolfgang Huber; Lars M Steinmetz
High-resolution transcription atlas of the mitotic cell cycle in budding yeast.
Genome biology 2010;11(3):R24.
2010: Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Jensen; Peer Bork
A side effect resource to capture phenotypic effects of drugs.
Molecular systems biology 2010;6():343.
2010: Jean Muller; D Szklarczyk; P Julien; Ivica Letunic; A Roth; M Kuhn; S Powell; Christian von Mering; Tobias Doerks; Lars Jensen; Peer Bork
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic acids research 2010;38(Database issue):D190-5.
2010: Michael Kuhn; Damian Szklarczyk; Andrea Franceschini; Monica Campillos; Christian von Mering; Lars Juhl Jensen; Andreas Beyer; Peer Bork
STITCH 2: an interaction network database for small molecules and proteins.
Nucleic acids research 2010;38(Database issue):D552-6.
2010: Stefan M Woerner; Yan P Yuan; Axel Benner; Sebastian Korff; Magnus von Knebel Doeberitz; Peer Bork
SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology.
Nucleic acids research 2010;38(Database issue):D682-9.
2009: Marc Güell; Vera van Noort; Eva Yus; Wei-Hua Chen; Justine Leigh-Bell; Konstantinos Michalodimitrakis; Takuji Yamada; Manimozhiyan Arumugam; Tobias Doerks; Sebastian Kühner; Michaela Rode; Mikita Suyama; Sabine Schmidt; Anne-Claude Gavin; Peer Bork; Luis Serrano
Transcriptome complexity in a genome-reduced bacterium.
Science (New York, N.Y.) 2009;326(5957):1268-71.
2009: Eva Yus; Tobias Maier; Konstantinos Michalodimitrakis; Vera van Noort; Takuji Yamada; Wei-Hua Chen; Judith A H Wodke; Marc Güell; Sira Martínez; Ronan Bourgeois; Sebastian Kühner; Emanuele Raineri; Ivica Letunic; Olga V Kalinina; Michaela Rode; Richard Herrmann; Ricardo Gutiérrez Gallego; Robert B Russell; Anne-Claude Gavin; Peer Bork; Luis Serrano
Impact of genome reduction on bacterial metabolism and its regulation.
Science (New York, N.Y.) 2009;326(5957):1263-8.
2009: Sebastian Kühner; Vera van Noort; Matthew J Betts; Alejandra Leo-Macias; Claire Batisse; Michaela Rode; Takuji Yamada; Tobias Maier; Samuel Bader; Pedro Beltran-Alvarez; Daniel Castaño-Diez; Wei-Hua Chen; Damien Devos; Marc Güell; Tomas Norambuena; Ines Racke; Vladimir Rybin; Alexander Schmidt; Eva Yus; Ruedi Aebersold; Richard Herrmann; Bettina Böttcher; Achilleas S Frangakis; Robert B Russell; Luis Serrano; Peer Bork; Anne-Claude Gavin
Proteome organization in a genome-reduced bacterium.
Science (New York, N.Y.) 2009;326(5957):1235-40.
2009: Takuji Yamada; Peer Bork
Evolution of biomolecular networks: lessons from metabolic and protein interactions.
Nature reviews. Molecular cell biology 2009;10(11):791-803.
2009: Gautier Koscielny; Vincent Le Texier; Chellappa Gopalakrishnan; Vasudev Kumanduri; Jean-Jack Riethoven; Francesco Nardone; Eleanor Stanley; Christine Fallsehr; Oliver Hofmann; Meelis Kull; Eoghan Harrington; Stéphanie Boué; Eduardo Eyras; Mireya Plass; Fabrice Lopez; William Ritchie; Virginie Moucadel; Takeshi Ara; Heike Pospisil; Alexander Herrmann; Jens G Reich; Roderic Guigó; Peer Bork; Magnus von Knebel Doeberitz; Jaak Vilo; Winston Hide; Rolf Apweiler; Thangavel Alphonse Thanaraj; Daniel Gautheret
ASTD: The Alternative Splicing and Transcript Diversity database.
Genomics 2009;93(3):213-20.
2009: Tara A Gianoulis; Jeroen Raes; Prianka V Patel; Robert Bjornson; Jan O Korbel; Ivica Letunic; Takuji Yamada; Alberto Paccanaro; Lars Jensen; Michael Snyder; Peer Bork; Mark Gerstein
Quantifying environmental adaptation of metabolic pathways in metagenomics.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(5):1374-9.
2009: Agnieszka S Juncker; Lars Jensen; Andrea Pierleoni; Andreas Bernsel; Michael L Tress; Peer Bork; Gunnar von Heijne; Alfonso Valencia; Christos Ouzounis; Rita Casadio; Søren Brunak
Sequence-based feature prediction and annotation of proteins.
Genome biology 2009;10(2):206.
2008: Lars Jensen; Peer Bork
Biochemistry. Not comparable, but complementary.
Science (New York, N.Y.) 2008;322(5898):56-7.
2008: Eoghan D Harrington; Peer Bork
Sircah: a tool for the detection and visualization of alternative transcripts.
Bioinformatics (Oxford, England) 2008;24(17):1959-60.
2008: Jeroen Raes; Peer Bork
Molecular eco-systems biology: towards an understanding of community function.
Nature reviews. Microbiology 2008;6(9):693-9.
2008: David Pincus; Ivica Letunic; Peer Bork; Wendell A Lim
Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(28):9680-4.
2008: Monica Campillos; Michael Kuhn; Anne-Claude Gavin; Lars Jensen; Peer Bork
Drug target identification using side-effect similarity.
Science (New York, N.Y.) 2008;321(5886):263-6.
2008: Shujiro Okuda; Takuji Yamada; Masami Hamajima; Masumi Itoh; Toshiaki Katayama; Peer Bork; Susumu Goto; Minoru Kanehisa
KEGG Atlas mapping for global analysis of metabolic pathways.
Nucleic acids research 2008;36(Web Server issue):W423-6.
2008: Eoghan D Harrington; Lars Jensen; Peer Bork
Predicting biological networks from genomic data.
FEBS letters 2008;582(8):1251-8.
2008: Michael Kuhn; Mónica Campillos; Paula González; Lars Jensen; Peer Bork
Large-scale prediction of drug-target relationships.
FEBS letters 2008;582(8):1283-90.
2008: Ivica Letunic; Takuji Yamada; Minoru Kanehisa; Peer Bork
iPath: interactive exploration of biochemical pathways and networks.
Trends in biochemical sciences 2008;33(3):101-3.
2008: Parantu K Shah; Lokesh P Tripathi; Lars Jensen; Murad Gahnim; Christopher Mason; Eileen E M Furlong; Veronica Rodrigues; Kevin P White; Peer Bork; Ramanathan Sowdhamini
Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families.
Gene 2008;407(1-2):199-215.
2008: Carlos Quijano; Pavel Tomancak; Jesus Lopez-Marti; Mikita Suyama; Peer Bork; Marco Milan; David Torrents; Miguel Manzanares
Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution.
Genome biology 2008;9(12):R176.
2008: Christian Perotti; Ruixuan Liu; Christine T Parusel; Nadine Böcher; Jörg Schultz; Peer Bork; Edith Pfitzner; Bernd Groner; Carrie S Shemanko
Heat shock protein-90-alpha, a prolactin-STAT5 target gene identified in breast cancer cells, is involved in apoptosis regulation.
Breast cancer research : BCR 2008;10(6):R94.
2008: Sebastian Korff; Stefan M Woerner; Yan P Yuan; Peer Bork; Magnus von Knebel Doeberitz; Johannes Gebert
Frameshift mutations in coding repeats of protein tyrosine phosphatase genes in colorectal tumors with microsatellite instability.
BMC cancer 2008;8():329.
2008: Konrad Foerstner; Tobias Doerks; Christopher J Creevey; Anja Doerks; Peer Bork
A computational screen for type I polyketide synthases in metagenomics shotgun data.
PloS one 2008;3(10):e3515.
2008: Martin Lee Miller; Lars Jensen; Francesca Diella; Claus Jørgensen; Michele Tinti; Lei Li; Marilyn Hsiung; Sirlester A Parker; Jennifer Bordeaux; thomas sicheritz-ponten; Marina Olhovsky; Adrian Pasculescu; Jes Alexander; Stefan Knapp; Nikolaj Blom; Peer Bork; Shawn Li; Gianni Cesareni; Tony Pawson; Benjamin E Turk; Michael B Yaffe; Søren Brunak; Rune Linding
Linear motif atlas for phosphorylation-dependent signaling.
Science signaling 2008;1(35):ra2.
2008: Albert Pallejà; Eoghan D Harrington; Peer Bork
Large gene overlaps in prokaryotic genomes: result of functional constraints or mispredictions?
BMC genomics 2008;9():335.
2008: Sean D Hooper; Jeroen Raes; Konrad Foerstner; Eoghan D Harrington; Daniel Dalevi; Peer Bork
A molecular study of microbe transfer between distant environments.
PloS one 2008;3(7):e2607.
2008: Lars Jensen; Ulrik de Lichtenberg; Thomas Skøt Jensen; Søren Brunak; Peer Bork
Circular reasoning rather than cyclic expression.
Genome biology 2008;9(6):403.
2008: Victor Kunin; Jeroen Raes; J Kirk Harris; John R Spear; Walker Jeffrey; Natalia Ivanova; Christian von Mering; Brad M Bebout; Norman R Pace; Peer Bork; Philip Hugenholtz
Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.
Molecular systems biology 2008;4():198.
2008: Giulia Soldà; Mikita Suyama; Paride Pelucchi; Silvia Boi; Alessandro Guffanti; Ermanno Rizzi; Peer Bork; Maria Luisa Tenchini; Francesca D Ciccarelli
Non-random retention of protein-coding overlapping genes in Metazoa.
BMC genomics 2008;9():174.
2008: Michael Kuhn; Christian von Mering; Mónica Campillos; Lars Jensen; Peer Bork
STITCH: interaction networks of chemicals and proteins.
Nucleic acids research 2008;36(Database issue):D684-8.
2008: Rune Linding; Lars Jensen; Adrian Pasculescu; Marina Olhovsky; Karen Colwill; Peer Bork; Michael B Yaffe; Tony Pawson
NetworKIN: a resource for exploring cellular phosphorylation networks.
Nucleic acids research 2008;36(Database issue):D695-9.
2008: Stefan Günther; Michael Kuhn; Mathias Dunkel; Mónica Campillos; Christian Senger; Evangelia Petsalaki; Jessica Ahmed; Eduardo Garcia Urdiales; Andreas Gewiess; Lars Jensen; Reinhard Schneider; Roman Skoblo; Robert B Russell; Philip Bourne; Peer Bork; Robert Preissner
SuperTarget and Matador: resources for exploring drug-target relationships.
Nucleic acids research 2008;36(Database issue):D919-22.
2008: Lars Jensen; Philippe Julien; Michael Kuhn; Christian von Mering; Jean Muller; Tobias Doerks; Peer Bork
eggNOG: automated construction and annotation of orthologous groups of genes.
Nucleic acids research 2008;36(Database issue):D250-4.
2008: Yannick Haudry; Hugo Berube; Ivica Letunic; Paul-Daniel Weeber; Julien Gagneur; Charles Girardot; Misha Kapushesky; Detlev Arendt; Peer Bork; Alvis Brazma; Eileen E M Furlong; Joachim Wittbrodt; Thorsten Henrich
4DXpress: a database for cross-species expression pattern comparisons.
Nucleic acids research 2008;36(Database issue):D847-53.
2007: Rotem Sorek; Yiwen Zhu; Christopher J Creevey; M Pilar Francino; Peer Bork; Edward M Rubin
Genome-wide experimental determination of barriers to horizontal gene transfer.
Science (New York, N.Y.) 2007;318(5855):1449-52.
2007: Ana Eulalio; Jan Rehwinkel; Mona Stricker; Eric Huntzinger; Schu-Fee Yang; Tobias Doerks; Silke Dorner; Peer Bork; Michael Boutros; Elisa Izaurralde
Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing.
Genes & development 2007;21(20):2558-70.
2007: Jeroen Raes; Konrad Foerstner; Peer Bork
Get the most out of your metagenome: computational analysis of environmental sequence data.
Current opinion in microbiology 2007;10(5):490-8.
2007: Eoghan D Harrington; A H Singh; Tobias Doerks; Ivica Letunic; Christian von Mering; Lars Jensen; Jeroen Raes; Peer Bork
Quantitative assessment of protein function prediction from metagenomics shotgun sequences.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(35):13913-8.
2007: Ulrik de Lichtenberg; Thomas Skøt Jensen; Søren Brunak; Peer Bork; Lars Jensen
Evolution of cell cycle control: same molecular machines, different regulation.
Cell cycle (Georgetown, Tex.) 2007;6(15):1819-25.
2007: Mikhail Pachkov; Thomas Dandekar; Jan Korbel; Peer Bork; Stefan Schuster
Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism.
Gene 2007;396(2):215-25.
2007: Carol Perez-Iratxeta; Peer Bork; Miguel Andrade
Update of the G2D tool for prioritization of gene candidates to inherited diseases.
Nucleic acids research 2007;35(Web Server issue):W212-6.
2007: Rune Linding; Lars Jensen; Gerard J. Ostheimer; Marcel A T M van Vugt; Claus Jørgensen; Ioana M Miron; Francesca Diella; Karen Colwill; Lorne Taylor; Kelly Elder; Pavel Metalnikov; Vivian Nguyen; Adrian Pasculescu; Jing Jin; Jin Gyoon Park; Leona D Samson; James R Woodgett; Robert B Russell; Peer Bork; Michael B Yaffe; Tony Pawson
Systematic discovery of in vivo phosphorylation networks.
Cell 2007;129(7):1415-26.
2007: Sven Danckwardt; Isabelle Kaufmann; Marc Gentzel; Konrad Foerstner; Anne-Susan Gantzert; Niels H Gehring; Gabriele Neu-Yilik; Peer Bork; Walter Keller; Matthias Wilm; Matthias W Hentze; Andreas E Kulozik
Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals.
The EMBO journal 2007;26(11):2658-69.
2007: Jeroen Raes; Eoghan D Harrington; Amoolya Hardev Singh; Peer Bork
Protein function space: viewing the limits or limited by our view?
Current opinion in structural biology 2007;17(3):362-9.
2007: Mewes Boettner; Christina Steffens; Christian von Mering; Peer Bork; Ulf Stahl; Christine Lang
Sequence-based factors influencing the expression of heterologous genes in the yeast Pichia pastoris--A comparative view on 79 human genes.
Journal of biotechnology 2007;130(1):1-10.
2007: Christian von Mering; Philip Hugenholtz; Jeroen Raes; Susannah Green Tringe; Tobias Doerks; Lars Jensen; N Ward; Peer Bork
Quantitative phylogenetic assessment of microbial communities in diverse environments.
Science (New York, N.Y.) 2007;315(5815):1126-30.
2007: Sean D Hooper; Stephanie Boué; Roland Krause; Lars Jensen; Christopher E Mason; Murad Ghanim; Kevin P White; Eileen E M Furlong; Peer Bork
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis.
Molecular systems biology 2007;3():72.
2007: Jeroen Raes; Jan O Korbel; Martin J Lercher; Christian von Mering; Peer Bork
Prediction of effective genome size in metagenomic samples.
Genome biology 2007;8(1):R10.
2007: Christian von Mering; Lars Jensen; Michael Kuhn; Samuel Chaffron; Tobias Doerks; Beate Krüger; Berend Snel; Peer Bork
STRING 7--recent developments in the integration and prediction of protein interactions.
Nucleic acids research 2007;35(Database issue):D358-62.
2007: Evgeny M Zdobnov; Peer Bork
Quantification of insect genome divergence.
Trends in genetics : TIG 2007;23(1):16-20.
2007: Ivica Letunic; Peer Bork
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.
Bioinformatics (Oxford, England) 2007;23(1):127-8.
2006: Florian Raible; Kristin Tessmar-Raible; Enrique Arboleda; Tobias Kaller; Peer Bork; Detlev Arendt; Maria I Arnone
Opsins and clusters of sensory G-protein-coupled receptors in the sea urchin genome.
Developmental biology 2006;300(1):461-75.
2006: Mónica Campillos; Tobias Doerks; Parantu K Shah; Peer Bork
Computational characterization of multiple Gag-like human proteins.
Trends in genetics : TIG 2006;22(11):585-9.
2006: Fabiana Perocchi; Lars Jensen; Julien Gagneur; Uwe Ahting; Christian von Mering; Peer Bork; Holger Prokisch; Lars M Steinmetz
Assessing systems properties of yeast mitochondria through an interaction map of the organelle.
PLoS genetics 2006;2(10):e170.
2006: Lars Jensen; Thomas Skøt Jensen; Ulrik de Lichtenberg; Søren Brunak; Peer Bork
Co-evolution of transcriptional and post-translational cell-cycle regulation.
Nature 2006;443(7111):594-7.
2006: Isabelle Behm-Ansmant; Jan Rehwinkel; Tobias Doerks; Alexander Stark; Peer Bork; Elisa Izaurralde
mRNA degradation by miRNAs and GW182 requires both CCR4:NOT deadenylase and DCP1:DCP2 decapping complexes.
Genes & development 2006;20(14):1885-98.
2006: Mikita Suyama; David Torrents; Peer Bork
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
Nucleic acids research 2006;34(Web Server issue):W609-12.
2006: Mikita Suyama; Eoghan D Harrington; Peer Bork; David Torrents
Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes.
PLoS computational biology 2006;2(6):e76.
2006: Thomas Sandmann; Lars Jensen; Janus S Jakobsen; Michal M Karzynski; Michael P Eichenlaub; Peer Bork; Eileen E M Furlong
A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development.
Developmental cell 2006;10(6):797-807.
2006: Parantu K Shah; Peer Bork
LSAT: learning about alternative transcripts in MEDLINE.
Bioinformatics (Oxford, England) 2006;22(7):857-65.
2006: Konrad Foerstner; Christian von Mering; Peer Bork
Comparative analysis of environmental sequences: potential and challenges.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1467):519-23.
2006: Jasmin Saric; Lars Jensen; Rossitza Ouzounova; Isabel Rojas; Peer Bork
Extraction of regulatory gene/protein networks from Medline.
Bioinformatics (Oxford, England) 2006;22(6):645-50.
2006: Francesca D Ciccarelli; Tobias Doerks; Christian von Mering; Christopher J Creevey; Berend Snel; Peer Bork
Toward automatic reconstruction of a highly resolved tree of life.
Science (New York, N.Y.) 2006;311(5765):1283-7.
2006: Itai Yanai; Jan O Korbel; Stephanie Boue; Shannon McWeeney; Peer Bork; Martin J Lercher
Similar gene expression profiles do not imply similar tissue functions.
Trends in genetics : TIG 2006;22(3):132-8.
2006: Mónica Campillos; Christian von Mering; Lars Jensen; Peer Bork
Identification and analysis of evolutionarily cohesive functional modules in protein networks.
Genome research 2006;16(3):374-82.
2006: Lars Jensen; Jasmin Saric; Peer Bork
Literature mining for the biologist: from information retrieval to biological discovery.
Nature reviews. Genetics 2006;7(2):119-29.
2006: Ivica Letunic; Richard R Copley; Birgit Pils; Stefan Pinkert; Jörg Schultz; Peer Bork
SMART 5: domains in the context of genomes and networks.
Nucleic acids research 2006;34(Database issue):D257-60.
2005: Sean D Hooper; Peer Bork
Medusa: a simple tool for interaction graph analysis.
Bioinformatics (Oxford, England) 2005;21(24):4432-3.
2005: Konrad Foerstner; Christian von Mering; Sean D Hooper; Peer Bork
Environments shape the nucleotide composition of genomes.
EMBO reports 2005;6(12):1208-13.
2005: Anaid Mees; Rebecca Rock; Francesca D Ciccarelli; Cornelia B Leberfinger; Johanna M Borawski; Peer Bork; Stefan Wiese; Manfred Gessler; Eugen Kerkhoff
Very-KIND is a novel nervous system specific guanine nucleotide exchange factor for Ras GTPases.
Gene expression patterns : GEP 2005;6(1):79-85.
2005: Florian Raible; Kristin Tessmar-Raible; Kazutoyo Osoegawa; Patrick Wincker; Claire Jubin; Guillaume Balavoine; David E K Ferrier; Vladimir Benes; Pieter de Jong; Jean Weissenbach; Peer Bork; Detlev Arendt
Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii.
Science (New York, N.Y.) 2005;310(5752):1325-6.
2005: Christof Taxis; Philipp Keller; Zaharoula Kavagiou; Lars Jensen; Julien Colombelli; Peer Bork; Ernst H K Stelzer; Michael Knop
Spore number control and breeding in Saccharomyces cerevisiae: a key role for a self-organizing system.
The Journal of cell biology 2005;171(4):627-40.
2005: Mikita Suyama; warren lathe; Peer Bork
Palindromic repetitive DNA elements with coding potential in Methanocaldococcus jannaschii.
FEBS letters 2005;579(24):5281-6.
2005: Jan Rehwinkel; Ivica Letunic; Jeroen Raes; Peer Bork; Elisa Izaurralde
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets.
RNA (New York, N.Y.) 2005;11(10):1530-44.
2005: Konrad Büssow; Christoph Scheich; Volker Sievert; Ulrich Harttig; Jörg Schultz; Bernd Simon; Peer Bork; Hans Lehrach; Udo Heinemann
Structural genomics of human proteins--target selection and generation of a public catalogue of expression clones.
Microbial cell factories 2005;4():21.
2005: Evgeny M Zdobnov; Christian von Mering; Ivica Letunic; Peer Bork
Consistency of genome-based methods in measuring Metazoan evolution.
FEBS letters 2005;579(15):3355-61.
2005: Parantu K Shah; Lars Jensen; Stéphanie Boué; Peer Bork
Extraction of transcript diversity from scientific literature.
PLoS computational biology 2005;1(1):e10.
2005: Peer Bork; Luis Serrano
Towards cellular systems in 4D.
Cell 2005;121(4):507-9.
2005: Parantu K Shah; Patrick Aloy; Peer Bork; Robert B Russell
Structural similarity to bridge sequence space: finding new families on the bridges.
Protein science : a publication of the Protein Society 2005;14(5):1305-14.
2005: Jan O Korbel; Tobias Doerks; Lars Jensen; Carol Perez-Iratxeta; Szymon Kaczanowski; Sean D Hooper; Miguel Andrade; Peer Bork
Systematic association of genes to phenotypes by genome and literature mining.
PLoS biology 2005;3(5):e134.
2005: Susannah Green Tringe; Christian von Mering; Arthur Kobayashi; Asaf Salamov; Kevin Chen; Hwai W Chang; Mircea Podar; Jay Short; Eric J Mathur; John C Detter; Peer Bork; Philip Hugenholtz; Edward M Rubin
Comparative metagenomics of microbial communities.
Science (New York, N.Y.) 2005;308(5721):554-7.
2005: Francesca D Ciccarelli; Peer Bork
The WHy domain mediates the response to desiccation in plants and bacteria.
Bioinformatics (Oxford, England) 2005;21(8):1304-7.
2005: Ulrik de Lichtenberg; Lars Jensen; Anders Fausbøll; Thomas Skøt Jensen; Peer Bork; Søren Brunak
Comparison of computational methods for the identification of cell cycle-regulated genes.
Bioinformatics (Oxford, England) 2005;21(7):1164-71.
2005: Francesca D Ciccarelli; Christian von Mering; Mikita Suyama; Eoghan D Harrington; Elisa Izaurralde; Peer Bork
Complex genomic rearrangements lead to novel primate gene function.
Genome research 2005;15(3):343-51.
2005: Ulrik de Lichtenberg; Lars Jensen; Søren Brunak; Peer Bork
Dynamic complex formation during the yeast cell cycle.
Science (New York, N.Y.) 2005;307(5710):724-7.
2005: Peer Bork
Is there biological research beyond Systems Biology? A comparative analysis of terms.
Molecular systems biology 2005;1():2005.0012.
2005: Carol Perez-Iratxeta; Matthias Wjst; Peer Bork; Miguel Andrade
G2D: a tool for mining genes associated with disease.
BMC genetics 2005;6():45.
2005: Raimund Tenhaken; Tobias Doerks; Peer Bork
DCD - a novel plant specific domain in proteins involved in development and programmed cell death.
BMC bioinformatics 2005;6():169.
2005: Evgeny M Zdobnov; Mónica Campillos; Eoghan D Harrington; David Torrents; Peer Bork
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.
Nucleic acids research 2005;33(3):946-54.
2005: Christian von Mering; Lars Jensen; Berend Snel; Sean D Hooper; Markus Krupp; Mathilde Foglierini; Nelly Jouffre; Martijn A Huynen; Peer Bork
STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
Nucleic acids research 2005;33(Database issue):D433-7.
2005: Guillaume Bourque; Evgeny M Zdobnov; Peer Bork; Pavel A Pevzner; Glenn Tesler
Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages.
Genome research 2005;15(1):98-110.
2004: Alexander Koehl; Nicole Schmidt; Anne Rieger; Sara M Pilgram; Ivica Letunic; Peer Bork; Florentina Soto; Eckhard Friauf; Hans Gerd Nothwang
Gene expression profiling of the rat superior olivary complex using serial analysis of gene expression.
The European journal of neuroscience 2004;20(12):3244-58.
2004: Roland Krause; Christian von Mering; Peer Bork; Thomas Dandekar
Shared components of protein complexes--versatile building blocks or biochemical artefacts?
BioEssays : news and reviews in molecular, cellular and developmental biology 2004;26(12):1333-43.
2004: Adam J Liska; Andrei V Popov; Shamil Sunyaev; Peg Coughlin; Bianca Habermann; Andrej Shevchenko; Peer Bork; Eric Karsenti; Andrej Shevchenko
Homology-based functional proteomics by mass spectrometry: application to the Xenopus microtubule-associated proteome.
Proteomics 2004;4(9):2707-21.
2004: Antonio J Pérez; Carol Perez-Iratxeta; Peer Bork; Guillermo Thode; Miguel Andrade
Gene annotation from scientific literature using mappings between keyword systems.
Bioinformatics (Oxford, England) 2004;20(13):2084-91.
2004: Mikita Suyama; David Torrents; Peer Bork
BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments.
Bioinformatics (Oxford, England) 2004;20(12):1968-70.
2004: Jan O Korbel; Lars Jensen; Christian von Mering; Peer Bork
Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs.
Nature biotechnology 2004;22(7):911-7.
2004: Lars Jensen; Julien Lagarde; Christian von Mering; Peer Bork
ArrayProspector: a web resource of functional associations inferred from microarray expression data.
Nucleic acids research 2004;32(Web Server issue):W445-8.
2004: Peer Bork; Lars Jensen; Christian von Mering; Arun K Ramani; Insuk Lee; Edward M Marcotte
Protein interaction networks from yeast to human.
Current opinion in structural biology 2004;14(3):292-9.
2004: Patrick Aloy; Bettina Böttcher; Hugo Ceulemans; Christina Leutwein; Christian Mellwig; Susanne Fischer; Anne-Claude Gavin; Peer Bork; Giulio Superti-Furga; Luis Serrano; Robert B Russell
Structure-based assembly of protein complexes in yeast.
Science (New York, N.Y.) 2004;303(5666):2026-9.
2004: Tobias Doerks; Miguel Andrade; warren lathe; Christian von Mering; Peer Bork
Global analysis of bacterial transcription factors to predict cellular target processes.
Trends in genetics : TIG 2004;20(3):126-31.
2004: Daniel Forler; Gwénaël Rabut; Francesca D Ciccarelli; Andrea Herold; Thomas Köcher; Ricarda Niggeweg; Peer Bork; Jan Ellenberg; Elisa Izaurralde
RanBP2/Nup358 provides a major binding site for NXF1-p15 dimers at the nuclear pore complex and functions in nuclear mRNA export.
Molecular and cellular biology 2004;24(3):1155-67.
2004: Tobias Doerks; Christian von Mering; Peer Bork
Functional clues for hypothetical proteins based on genomic context analysis in prokaryotes.
Nucleic acids research 2004;32(21):6321-6.
2004: Ivica Letunic; Richard R Copley; Steffen Schmidt; Francesca D Ciccarelli; Tobias Doerks; Jörg Schultz; Chris P Ponting; Peer Bork
SMART 4.0: towards genomic data integration.
Nucleic acids research 2004;32(Database issue):D142-4.
2003: Christian von Mering; Evgeny M Zdobnov; Sophia Tsoka; Francesca D Ciccarelli; Jose Pereira-Leal; Christos Ouzounis; Peer Bork
Genome evolution reveals biochemical networks and functional modules.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(26):15428-33.
2003: Francesca D Ciccarelli; Elisa Izaurralde; Peer Bork
The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.
BMC bioinformatics 2003;4():64.
2003: Shamil Sunyaev; Fyodor A Kondrashov; Peer Bork; Vasily Ramensky
Impact of selection, mutation rate and genetic drift on human genetic variation.
Human molecular genetics 2003;12(24):3325-30.
2003: David Torrents; Mikita Suyama; Evgeny M Zdobnov; Peer Bork
A genome-wide survey of human pseudogenes.
Genome research 2003;13(12):2559-67.
2003: Rune Linding; Lars Jensen; Francesca Diella; Peer Bork; Toby J Gibson; Robert B Russell
Protein disorder prediction: implications for structural proteomics.
Structure (London, England : 1993) 2003;11(11):1453-9.
2003: Stephanie Boue; Ivica Letunic; Peer Bork
Alternative splicing and evolution.
BioEssays : news and reviews in molecular, cellular and developmental biology 2003;25(11):1031-4.
2003: Roland Krause; Christian von Mering; Peer Bork
A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens.
Bioinformatics (Oxford, England) 2003;19(15):1901-8.
2003: David Gatfield; Leonie Unterholzner; Francesca D Ciccarelli; Peer Bork; Elisa Izaurralde
Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways.
The EMBO journal 2003;22(15):3960-70.
2003: Francesca D Ciccarelli; Peer Bork; Eugen Kerkhoff
The KIND module: a putative signalling domain evolved from the C lobe of the protein kinase fold.
Trends in biochemical sciences 2003;28(7):349-52.
2003: Carol Perez-Iratxeta; Antonio J Pérez; Peer Bork; Miguel Andrade
Update on XplorMed: A web server for exploring scientific literature.
Nucleic acids research 2003;31(13):3866-8.
2003: Pål Puntervoll; Rune Linding; Christine Gemünd; Sophie Chabanis-Davidson; Morten Mattingsdal; Scott Cameron; David M A Martin; Gabriele Ausiello; Barbara Brannetti; Anna Costantini; Fabrizio Ferrè; Vincenza Maselli; Allegra Via; Gianni Cesareni; Francesca Diella; Giulio Superti-Furga; Lucjan S Wyrwicz; Chenna Ramu; Caroline McGuigan; Rambabu Gudavalli; Ivica Letunic; Peer Bork; Leszek Rychlewski; Bernhard Küster; Manuela Helmer-Citterich; William N Hunter; Rein Aasland; Toby J Gibson
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
Nucleic acids research 2003;31(13):3625-30.
2003: Enrique Morett; Jan O Korbel; Emmanuvel Rajan; Gloria Saab-Rincon; Leticia Olvera; Maricela Olvera; Steffen Schmidt; Berend Snel; Peer Bork
Systematic discovery of analogous enzymes in thiamin biosynthesis.
Nature biotechnology 2003;21(7):790-5.
2003: Steffen Schmidt; Shamil Sunyaev; Peer Bork; Thomas Dandekar
Metabolites: a helping hand for pathway evolution?
Trends in biochemical sciences 2003;28(6):336-41.
2003: Parantu K Shah; Carol Perez-Iratxeta; Peer Bork; Miguel Andrade
Information extraction from full text scientific articles: where are the keywords?
BMC bioinformatics 2003;4():20.
2003: Rebecca Netzel; Carol Perez-Iratxeta; Peer Bork; Miguel Andrade
The way we write.
EMBO reports 2003;4(5):446-51.
2003: Stefan M Woerner; Axel Benner; Christian Sutter; Marian Schiller; Yan P Yuan; Gisela Keller; Peer Bork; Magnus von Knebel Doeberitz; Johannes Gebert
Pathogenesis of DNA repair-deficient cancers: a statistical meta-analysis of putative Real Common Target genes.
Oncogene 2003;22(15):2226-35.
2003: Francesca D Ciccarelli; christos proukakis; Heema Patel; Harold Cross; Shakil Azam; Michael A Patton; Peer Bork; Andrew H Crosby
The identification of a conserved domain in both spartin and spastin, mutated in hereditary spastic paraplegia.
Genomics 2003;81(4):437-41.
2003: Martijn A Huynen; Berend Snel; Christian von Mering; Peer Bork
Function prediction and protein networks.
Current opinion in cell biology 2003;15(2):191-8.
2003: Evgenia Kriventseva; Ina Koch; Rolf Apweiler; Martin Vingron; Peer Bork; Mikhail S Gelfand; Shamil Sunyaev
Increase of functional diversity by alternative splicing.
Trends in genetics : TIG 2003;19(3):124-8.
2003: Minoru Kanehisa; Peer Bork
Bioinformatics in the post-sequence era.
Nature genetics 2003;33 Suppl():305-10.
2003: Robert H Waterston; LaDeana W Hillier; Lucinda Fulton; Robert S Fulton; Tina Graves; Kymberlie H Pepin; Peer Bork; Mikita Suyama; David Torrents; Asif T Chinwalla; Elaine R Mardis; John D McPherson; Richard K Wilson
The human genome: genes, pseudogenes, and variation on chromosome 7.
Cold Spring Harbor symposia on quantitative biology 2003;68():13-22.
2003: Carol Perez-Iratxeta; Nagore Astola; Francesca D Ciccarelli; Parantu K Sha; Peer Bork; Miguel Andrade
A protocol for the update of references to scientific literature in biological databases.
Applied bioinformatics 2003;2(3):189-91.
2003: Christian von Mering; Martijn A Huynen; Daniel Jaeggi; Steffen Schmidt; Peer Bork; Berend Snel
STRING: a database of predicted functional associations between proteins.
Nucleic acids research 2003;31(1):258-61.
2003: Andrej Shevchenko; Shamil Sunyaev; Adam J Liska; Peer Bork; Andrej Shevchenko
Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes.
Methods in molecular biology (Clifton, N.J.) 2003;211():221-34.
2002: Matthias Kloor; Peer Bork; Alexander Duwe; Rüdiger Klaes; Magnus von Knebel Doeberitz; Ruediger Ridder
Identification and characterization of UEV3, a human cDNA with similarities to inactive E2 ubiquitin-conjugating enzymes.
Biochimica et biophysica acta 2002;1579(2-3):219-24.
2002: Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; bernard berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michèle Delley; R David Pridmore; Fabrizio Arigoni
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(22):14422-7.
2002: Vasily Ramensky; Peer Bork; Shamil Sunyaev
Human non-synonymous SNPs: server and survey.
Nucleic acids research 2002;30(17):3894-900.
2002: Miguel Andrade; Francesca D Ciccarelli; Carol Perez-Iratxeta; Peer Bork
NEAT: a domain duplicated in genes near the components of a putative Fe3+ siderophore transporter from Gram-positive pathogenic bacteria.
Genome biology 2002;3(9):RESEARCH0047.
2002: Richard Mott; Jörg Schultz; Peer Bork; Chris P Ponting
Predicting protein cellular localization using a domain projection method.
Genome research 2002;12(8):1168-74.
2002: Domenico Bordo; Peer Bork
The rhodanese/Cdc25 phosphatase superfamily. Sequence-structure-function relations.
EMBO reports 2002;3(8):741-6.
2002: Heema Patel; Harold Cross; christos proukakis; Ruth Hershberger; Peer Bork; Francesca D Ciccarelli; Michael A Patton; Victor A McKusick; Andrew H Crosby
SPG20 is mutated in Troyer syndrome, an hereditary spastic paraplegia.
Nature genetics 2002;31(4):347-8.
2002: Patrick Aloy; Francesca D Ciccarelli; Christina Leutwein; Anne-Claude Gavin; Giulio Superti-Furga; Peer Bork; Bettina Bottcher; Robert B Russell
A complex prediction: three-dimensional model of the yeast exosome.
EMBO reports 2002;3(7):628-35.
2002: Carol Perez-Iratxeta; Peer Bork; Miguel Andrade
Association of genes to genetically inherited diseases using data mining.
Nature genetics 2002;31(3):316-9.
2002: Christian von Mering; Peer Bork
Teamed up for transcription.
Nature 2002;417(6891):797-8.
2002: Ivica Letunic; Richard R Copley; Peer Bork
Common exon duplication in animals and its role in alternative splicing.
Human molecular genetics 2002;11(13):1561-7.
2002: Dana Thomasova; Lucas Q Ton; Richard R Copley; Evgeny M Zdobnov; Xuelan Wang; Young S Hong; Cheolho Sim; Peer Bork; Fotis C Kafatos; Frank H Collins
Comparative genomic analysis in the region of a major Plasmodium-refractoriness locus of Anopheles gambiae.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):8179-84.
2002: Carol Perez-Iratxeta; Peer Bork; Miguel Andrade
Exploring MEDLINE abstracts with XplorMed.
Drugs of today (Barcelona, Spain : 1998) 2002;38(6):381-9.
2002: Carol Perez-Iratxeta; Harindar S Keer; Peer Bork; Miguel Andrade
Computing fuzzy associations for the analysis of biological literature.
BioTechniques 2002;32(6):1380-2, 1384-5.
2002: Christian von Mering; Roland Krause; Berend Snel; Michael Cornell; Stephen G Oliver; Stanley Fields; Peer Bork
Comparative assessment of large-scale data sets of protein-protein interactions.
Nature 2002;417(6887):399-403.
2002: Berend Snel; Peer Bork; Martijn A Huynen
The identification of functional modules from the genomic association of genes.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):5890-5.
2002: Tobias Doerks; Saskia Huber; Erich Buchner; Peer Bork
BSD: a novel domain in transcription factors and synapse-associated proteins.
Trends in biochemical sciences 2002;27(4):168-70.
2002: Steffen Schmidt; Peer Bork; Thomas Dandekar
A versatile structural domain analysis server using profile weight matrices.
Journal of chemical information and computer sciences 2002;42(2):405-7.
2002: Francesca D Ciccarelli; Tobias Doerks; Peer Bork
AMOP, a protein module alternatively spliced in cancer cells.
Trends in biochemical sciences 2002;27(3):113-5.
2002: Jan O Korbel; Berend Snel; Martijn A Huynen; Peer Bork
SHOT: a web server for the construction of genome phylogenies.
Trends in genetics : TIG 2002;18(3):158-62.
2002: Richard R Copley; Tobias Doerks; Ivica Letunic; Peer Bork
Protein domain analysis in the era of complete genomes.
FEBS letters 2002;513(1):129-34.
2002: Francesca D Ciccarelli; Richard R Copley; Tobias Doerks; Robert B Russell; Peer Bork
CASH--a beta-helix domain widespread among carbohydrate-binding proteins.
Trends in biochemical sciences 2002;27(2):59-62.
2002: Richard R Copley; Ivica Letunic; Peer Bork
Genome and protein evolution in eukaryotes.
Current opinion in chemical biology 2002;6(1):39-45.
2002: Richard R Copley; Chris P Ponting; Jörg Schultz; Peer Bork
Sequence analysis of multidomain proteins: past perspectives and future directions.
Advances in protein chemistry 2002;61():75-98.
2002: Peer Bork
Comparative analysis of protein interaction networks.
Bioinformatics (Oxford, England) 2002;18 Suppl 2():S64.
2002: Tobias Doerks; Richard R Copley; Jörg Schultz; Chris P Ponting; Peer Bork
Systematic identification of novel protein domain families associated with nuclear functions.
Genome research 2002;12(1):47-56.
2002: Berend Snel; Peer Bork; Martijn A Huynen
Genomes in flux: the evolution of archaeal and proteobacterial gene content.
Genome research 2002;12(1):17-25.
2002: Ivica Letunic; Leo Goodstadt; Nicholas J Dickens; Tobias Doerks; Jörg Schultz; Richard Mott; Francesca D Ciccarelli; Richard R Copley; Chris P Ponting; Peer Bork
Recent improvements to the SMART domain-based sequence annotation resource.
Nucleic acids research 2002;30(1):242-4.
2002: David Brett; Heike Pospisil; Juan Valcárcel; Jens Reich; Peer Bork
Alternative splicing and genome complexity.
Nature genetics 2002;30(1):29-30.
2001: Eugen Kerkhoff; J C Simpson; Cornelia B Leberfinger; I M Otto; T Doerks; Peer Bork; Ulf R Rapp; Thomas Raabe; R Pepperkok
The Spir actin organizers are involved in vesicle transport processes.
Current biology : CB 2001;11(24):1963-8.
2001: Carol Perez-Iratxeta; Peer Bork; Miguel Andrade
XplorMed: a tool for exploring MEDLINE abstracts.
Trends in biochemical sciences 2001;26(9):573-5.
2001: Stefan M Woerner; Johannes Gebert; Yan P Yuan; Christian Sutter; Ruediger Ridder; Peer Bork; Magnus von Knebel Doeberitz
Systematic identification of genes with coding microsatellites mutated in DNA mismatch repair-deficient cancer cells.
International journal of cancer. Journal international du cancer 2001;93(1):12-9.
2001: Michael Linnebacher; Johannes Gebert; Wolfgang Rudy; Stefan M Woerner; Yan P Yuan; Peer Bork; Magnus von Knebel Doeberitz
Frameshift peptide-derived T-cell epitopes: a source of novel tumor-specific antigens.
International journal of cancer. Journal international du cancer 2001;93(1):6-11.
2001: Miguel Andrade; Carlo Petosa; Seán O'Donoghue; Christoph W Müller; Peer Bork
Comparison of ARM and HEAT protein repeats.
Journal of molecular biology 2001;309(1):1-18.
2001: Andrej Shevchenko; Shamil Sunyaev; Alexander Loboda; A Shevchenko; Peer Bork; Werner Ens; Kenneth G Standing
Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching.
Analytical chemistry 2001;73(9):1917-26.
2001: Shamil Sunyaev; Vasily Ramensky; I Koch; warren lathe; Alexey S Kondrashov; Peer Bork
Prediction of deleterious human alleles.
Human molecular genetics 2001;10(6):591-7.
2001: Tobias Doerks; Richard R Copley; Peer Bork
DDT -- a novel domain in different transcription and chromosome remodeling factors.
Trends in biochemical sciences 2001;26(3):145-6.
2001: Shamil Sunyaev; warren lathe; Peer Bork
Integration of genome data and protein structures: prediction of protein folds, protein interactions and "molecular phenotypes" of single nucleotide polymorphisms.
Current opinion in structural biology 2001;11(1):125-30.
2001: Birgit Eisenhaber; Peer Bork; Frank Eisenhaber
Post-translational GPI lipid anchor modification of proteins in kingdoms of life: analysis of protein sequence data from complete genomes.
Protein engineering 2001;14(1):17-25.
2000: Andrea Herold; Mikita Suyama; João Pedro Rodrigues; Isabelle C Braun; Ulrike Kutay; Maria Carmo-Fonseca; Peer Bork; Elisa Izaurralde
TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture.
Molecular and cellular biology 2000;20(23):8996-9008.
2000: R R Copley; Peer Bork
Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways.
Journal of molecular biology 2000;303(4):627-41.
2000: warren lathe; Berend Snel; Peer Bork
Gene context conservation of a higher order than operons.
Trends in biochemical sciences 2000;25(10):474-9.
2000: Berend Snel; G Lehmann; Peer Bork; Martijn A Huynen
STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene.
Nucleic acids research 2000;28(18):3442-4.
2000: David Brett; G Lehmann; J Hanke; S Gross; Jens Reich; Peer Bork
EST analysis online: WWW tools for detection of SNPs and alternative splice forms.
Trends in genetics : TIG 2000;16(9):416-8.
2000: Thomas Dandekar; M Huynen; JT Regula; Barbara Ueberle; C U Zimmermann; Miguel Andrade; Tobias Doerks; Luis Sánchez-Pulido; Berend Snel; Mikita Suyama; Y P Yuan; R Herrmann; Peer Bork
Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.
Nucleic acids research 2000;28(17):3278-88.
2000: Martijn A Huynen; Berend Snel; warren lathe; Peer Bork
Predicting protein function by genomic context: quantitative evaluation and qualitative inferences.
Genome research 2000;10(8):1204-10.
2000: Shamil Sunyaev; warren lathe; Vasily Ramensky; Peer Bork
SNP frequencies in human genes an excess of rare alleles and differing modes of selection.
Trends in genetics : TIG 2000;16(8):335-7.
2000: Mikita Suyama; Tobias Doerks; Isabelle C Braun; M Sattler; Elisa Izaurralde; Peer Bork
Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins.
EMBO reports 2000;1(1):53-8.
2000: Luis Sánchez-Pulido; Y P Yuan; Miguel Andrade; Peer Bork
NAIL-Network Analysis Interface for Linking HMMER results.
Bioinformatics (Oxford, England) 2000;16(7):656-7.
2000: Birgit Eisenhaber; Peer Bork; Y Yuan; G Löffler; Frank Eisenhaber
Automated annotation of GPI anchor sites: case study C. elegans.
Trends in biochemical sciences 2000;25(7):340-1.
2000: Miguel Andrade; Peer Bork
Automated extraction of information in molecular biology.
FEBS letters 2000;476(1-2):12-7.
2000: George Dimopoulos; Thomas L Casavant; S Chang; Todd E Scheetz; C Roberts; M Donohue; J Schultz; Vladimir Benes; Peer Bork; Wilhelm Ansorge; M B Soares; Fotis C Kafatos
Anopheles gambiae pilot gene discovery project: identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(12):6619-24.
2000: M Huynen; Berend Snel; warren lathe; Peer Bork
Exploitation of gene context.
Current opinion in structural biology 2000;10(3):366-70.
2000: David Brett; J Hanke; G Lehmann; S Haase; SJ Delbrück; S Krueger; Jens Reich; Peer Bork
EST comparison indicates 38% of human mRNAs contain possible alternative splice forms.
FEBS letters 2000;474(1):83-6.
2000: Miguel Andrade; Chris P Ponting; Toby J Gibson; Peer Bork
Homology-based method for identification of protein repeats using statistical significance estimates.
Journal of molecular biology 2000;298(3):521-37.
2000: Shamil Sunyaev; Vasily Ramensky; Peer Bork
Towards a structural basis of human non-synonymous single nucleotide polymorphisms.
Trends in genetics : TIG 2000;16(5):198-200.
2000: Françoise Stutz; Angela Bachi; Tobias Doerks; Isabelle C Braun; Bertrand Séraphin; Matthias Wilm; Peer Bork; Elisa Izaurralde
REF, an evolutionary conserved family of hnRNP-like proteins, interacts with TAP/Mex67p and participates in mRNA nuclear export.
RNA (New York, N.Y.) 2000;6(4):638-50.
2000: I M Otto; Thomas Raabe; Ulrike E E Rennefahrt; Peer Bork; Ulf R Rapp; Eugen Kerkhoff
The p150-Spir protein provides a link between c-Jun N-terminal kinase function and actin reorganization.
Current biology : CB 2000;10(6):345-8.
2000: Shamil Sunyaev; J Hanke; David Brett; Atakan Aydin; I Zastrow; warren lathe; Peer Bork; Jens Reich
Individual variation in protein-coding sequences of human genome.
Advances in protein chemistry 2000;54():409-37.
2000: Berend Snel; Peer Bork; Martijn A Huynen
Genome evolution. Gene fusion versus gene fission.
Trends in genetics : TIG 2000;16(1):9-11.
1999: Z Liu; Maria J Macias; Matthew J Bottomley; Gunter Stier; Jens P Linge; Michael Nilges; Peer Bork; Michael Sattler
The three-dimensional structure of the HRDC domain and implications for the Werner and Bloom syndrome proteins.
Structure (London, England : 1993) 1999;7(12):1557-66.
1999: Shamil Sunyaev; J Hanke; Atakan Aydin; U Wirkner; I Zastrow; Jens Reich; Peer Bork
Prediction of nonsynonymous single nucleotide polymorphisms in human disease-associated genes.
Journal of molecular medicine (Berlin, Germany) 1999;77(11):754-60.
1999: J Hanke; David Brett; I Zastrow; Atakan Aydin; SJ Delbrück; G Lehmann; F Luft; Jens Reich; Peer Bork
Alternative splicing of human genes: more the rule than the exception?
Trends in genetics : TIG 1999;15(10):389-90.
1999: Birgit Eisenhaber; Peer Bork; Frank Eisenhaber
Prediction of potential GPI-modification sites in proprotein sequences.
Journal of molecular biology 1999;292(3):741-58.
1999: J Hanke; G Lehmann; Peer Bork; Jens G Reich
Associative database of protein sequences.
Bioinformatics (Oxford, England) 1999;15(9):741-8.
1999: Frank Eisenhaber; Peer Bork
Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries.
Bioinformatics (Oxford, England) 1999;15(7-8):528-35.
1999: Martijn A Huynen; T Dandekar; Peer Bork
Variation and evolution of the citric-acid cycle: a genomic perspective.
Trends in microbiology 1999;7(7):281-91.
1999: R R Copley; J Schultz; C P Ponting; Peer Bork
Protein families in multicellular organisms.
Current opinion in structural biology 1999;9(3):408-15.
1999: Berend Snel; Peer Bork; Martijn A Huynen
Genome phylogeny based on gene content.
Nature genetics 1999;21(1):108-10.
1998: Birgit Eisenhaber; Peer Bork; Frank Eisenhaber
Sequence properties of GPI-anchored proteins near the omega-site: constraints for the polypeptide binding site of the putative transamidase.
Protein engineering 1998;11(12):1155-61.
1998: Peer Bork; Thomas Dandekar; Y Diaz-Lazcoz; Frank Eisenhaber; Martijn A Huynen; Y Yuan
Predicting function: from genes to genomes and back.
Journal of molecular biology 1998;283(4):707-25.
1998: Thomas Dandekar; Berend Snel; Martijn A Huynen; Peer Bork
Conservation of gene order: a fingerprint of proteins that physically interact.
Trends in biochemical sciences 1998;23(9):324-8.
1998: Enrique Morett; Peer Bork
Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC.
FEBS letters 1998;433(1-2):108-12.
1998: J Schultz; F Milpetz; Peer Bork; Chris P Ponting
SMART, a simple modular architecture research tool: identification of signaling domains.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(11):5857-64.
1998: Martijn A Huynen; Peer Bork
Measuring genome evolution.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(11):5849-56.
1998: M Huynen; Thomas Dandekar; Peer Bork
Differential genome analysis applied to the species-specific features of Helicobacter pylori.
FEBS letters 1998;426(1):1-5.
1998: Frank Eisenhaber; Peer Bork
Wanted: subcellular localization of proteins based on sequence.
Trends in cell biology 1998;8(4):169-70.
1998: G Beckmann; J Hanke; Peer Bork; Jens G Reich
Merging extracellular domains: fold prediction for laminin G-like and amino-terminal thrombospondin-like modules based on homology to pentraxins.
Journal of molecular biology 1998;275(5):725-30.
1998: Peer Bork; Thomas Dandekar; Frank Eisenhaber; M Huynen
Characterization of targeting domains by sequence analysis: glycogen-binding domains in protein phosphatases.
Journal of molecular medicine (Berlin, Germany) 1998;76(2):77-9.
1998: Y P Yuan; O Eulenstein; M Vingron; Peer Bork
Towards detection of orthologues in sequence databases.
Bioinformatics (Oxford, England) 1998;14(3):285-9.
1998: Thomas Dandekar; K Beyer; Peer Bork; MR Kenealy; Kostas Pantopoulos; Matthias W Hentze; V Sonntag-Buck; Gilles Flouriot; Frank Gannon; S Schreiber
Systematic genomic screening and analysis of mRNA in untranslated regions and mRNA precursors: combining experimental and computational approaches.
Bioinformatics (Oxford, England) 1998;14(3):271-8.
1997: Martijn A Huynen; Y Diaz-Lazcoz; Peer Bork
Differential genome display.
Trends in genetics : TIG 1997;13(10):389-90.
1997: Peer Bork; J Schultz; C P Ponting
Cytoplasmic signalling domains: the next generation.
Trends in biochemical sciences 1997;22(8):296-8.
1997: J Schultz; C P Ponting; Kay Hofmann; Peer Bork
SAM as a protein interaction domain involved in developmental regulation.
Protein science : a publication of the Protein Society 1997;6(1):249-53.
1996: Peer Bork; N P Brown; Hedi Hegyi; J Schultz
The protein phosphatase 2C (PP2C) superfamily: detection of bacterial homologues.
Protein science : a publication of the Protein Society 1996;5(7):1421-5.
1996: J Hanke; G Beckmann; Peer Bork; Jens G Reich
Self-organizing hierarchic networks for pattern recognition in protein sequence.
Protein science : a publication of the Protein Society 1996;5(1):72-82.
1995: Christos Ouzounis; Peer Bork; G Casari; Chris Sander
New protein functions in yeast chromosome VIII.
Protein science : a publication of the Protein Society 1995;4(11):2424-8.
1995: G Casari; Miguel Andrade; Peer Bork; J Boyle; A Daruvar; Christos Ouzounis; Reinhard Schneider; Javier Tamames; Carmen Galvez; Chris Sander
Challenging times for bioinformatics.
Nature 1995;376(6542):647-8.
1995: Peer Bork; L Patthy
The SEA module: a new extracellular domain associated with O-glycosylation.
Protein science : a publication of the Protein Society 1995;4(7):1421-5.
1995: Peer Bork; Christos Ouzounis; G Casari; Reinhard Schneider; Chris Sander; M Dolan; Walter Gilbert; P M Gillevet
Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology.
Molecular microbiology 1995;16(5):955-67.
1995: Peer Bork; Christos Ouzounis; J McEntyre
Ready for a motif submission? A proposed checklist.
Trends in biochemical sciences 1995;20(3):104.
1995: Peer Bork; J Gellerich; H Groth; Rob Hooft; F Martin
Divergent evolution of a beta/alpha-barrel subclass: detection of numerous phosphate-binding sites by motif search.
Protein science : a publication of the Protein Society 1995;4(2):268-74.
1994: Peer Bork; Marius Sudol
The WW domain: a signalling site in dystrophin?
Trends in biochemical sciences 1994;19(12):531-3.
1994: Peer Bork; L Holm; Chris Sander
The immunoglobulin fold. Structural classification, sequence patterns and common core.
Journal of molecular biology 1994;242(4):309-20.
1994: Peer Bork; E V Koonin
A new family of carbon-nitrogen hydrolases.
Protein science : a publication of the Protein Society 1994;3(8):1344-6.
1994: Christos Ouzounis; Peer Bork; Chris Sander
The modular structure of NifU proteins.
Trends in biochemical sciences 1994;19(5):199-200.
1994: M Scharf; Reinhard Schneider; G Casari; Peer Bork; Carmen Galvez; Christos Ouzounis; Chris Sander
GeneQuiz: a workbench for sequence analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():348-53.
1993: Peer Bork; Chris Sander
A hybrid protein kinase-RNase in an interferon-induced pathway?
FEBS letters 1993;334(2):149-52.
1993: Peer Bork
The modular architecture of a new family of growth regulators related to connective tissue growth factor.
FEBS letters 1993;327(2):125-30.
1993: Peer Bork; R F Doolittle
Fibronectin type III modules in the receptor phosphatase CD45 and tapeworm antigens.
Protein science : a publication of the Protein Society 1993;2(7):1185-7.
1993: Peer Bork; G Beckmann
The CUB domain. A widespread module in developmentally regulated proteins.
Journal of molecular biology 1993;231(2):539-45.
1993: Peer Bork; Chris Sander; Carmen Galvez
Convergent evolution of similar enzymatic function on different protein folds: the hexokinase, ribokinase, and galactokinase families of sugar kinases.
Protein science : a publication of the Protein Society 1993;2(1):31-40.
1992: Peer Bork; Christos Ouzounis; Chris Sander; M Scharf; Reinhard Schneider; E Sonnhammer
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.
Protein science : a publication of the Protein Society 1992;1(12):1677-90.
1992: Peer Bork; R F Doolittle
Proposed acquisition of an animal protein domain by bacteria.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(19):8990-4.
1992: Peer Bork; Chris Sander; Carmen Galvez
An ATPase domain common to prokaryotic cell cycle proteins, sugar kinases, actin, and hsp70 heat shock proteins.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(16):7290-4.
1992: Peer Bork
The modular architecture of vertebrate collagens.
FEBS letters 1992;307(1):49-54.
1992: Peer Bork; Chris Sander
A large domain common to sperm receptors (Zp2 and Zp3) and TGF-beta type III receptor.
FEBS letters 1992;300(3):237-40.
1992: Peer Bork; Chris Sander; A Valencia; B Bukau
A module of the DnaJ heat shock proteins found in malaria parasites.
Trends in biochemical sciences 1992;17(4):129.