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Erich Bornberg-Bauer

Research Profile

Phenomena

Evolution, Molecular

Occupations

Concepts & Ideas

Chemicals & Drugs

Living Beings

Zosteraceae

Physiology

Gene Duplication

Genes & Molecular Sequences

Activities & Behaviors

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Publications

TOP 3
Andrew D Moore; Andreas Schüler; Sonja Grath; Ann K Huylmans; Erich Bornberg-Bauer
Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree.
Philine G D Feulner; Martin Kalbe; Tobias L Lenz; Manfred Milinski; Marvin Mundry; Mahesh Panchal; Thorsten B H Reusch; Irene E Samonte; Monika Stoll; Frédéric J J Chain; Christophe Eizaguirre; Erich Bornberg-Bauer
Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks.
Lothar Wissler; Jürgen Gadau; Martin Helmkampf; Daniel F Simola; Erich Bornberg-Bauer
Mechanisms and dynamics of orphan gene emergence in insect genomes.

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All Publications

2013: Andrew D Moore; Andreas Schüler; Sonja Grath; Ann K Huylmans; Erich Bornberg-Bauer
Quantification and functional analysis of modular protein evolution in a dense phylogenetic tree.
Biochimica et biophysica acta 2013;1834(5):898-907.
2013: Philine G D Feulner; Martin Kalbe; Tobias L Lenz; Manfred Milinski; Marvin Mundry; Mahesh Panchal; Thorsten B H Reusch; Irene E Samonte; Monika Stoll; Frédéric J J Chain; Christophe Eizaguirre; Erich Bornberg-Bauer
Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks.
Molecular ecology 2013;22(3):635-49.
2013: Lothar Wissler; Jürgen Gadau; Martin Helmkampf; Daniel F Simola; Erich Bornberg-Bauer
Mechanisms and dynamics of orphan gene emergence in insect genomes.
Genome biology and evolution 2013;5(2):439-55.
2012: Tobias Sikosek; Hue Sun Chan; Erich Bornberg-Bauer
Escape from Adaptive Conflict follows from weak functional trade-offs and mutational robustness.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(37):14888-93.
2012: Oliver Niehuis; Ralph S Peters; Malte Petersen; Hans Pohl; Peter F Stadler; Hakim Tafer; Rolf G Beutel; Erich Bornberg-Bauer; Alexander Donath; Carina Eisenhardt; Sonja Grath; Gerrit Hartig; Jana Hertel; Veiko Krauss; Jörg Lehmann; Christoph Mayer; Duane D McKenna; Karen Meusemann; Bernhard Misof
Genomic and morphological evidence converge to resolve the enigma of Strepsiptera.
Current biology : CB 2012;22(14):1309-13.
2012: Jenny Gu; Ann-Kathrin Huylmans; Elisabeth Klemp; Thorsten B H Reusch; Katrin Weber; Isabell Wienpahl; Gidon Winters; Karsten Zecher; Erich Bornberg-Bauer; Susanne U Franssen; Andreas P M Weber
Identifying core features of adaptive metabolic mechanisms for chronic heat stress attenuation contributing to systems robustness.
Integrative biology : quantitative biosciences from nano to macro 2012;4(5):480-93.
2012: Prakash G Balasubramanian; Anna Beckmann; Erich Bornberg-Bauer; Thomas W Holstein; Martina Schnölzer; Andreas Schüler; Uwe Warnken; Suat Ozbek
Proteome of Hydra nematocyst.
The Journal of biological chemistry 2012;287(13):9672-81.
2012: Andrew D Moore; Erich Bornberg-Bauer
The dynamics and evolutionary potential of domain loss and emergence.
Molecular biology and evolution 2012;29(2):787-96.
2012: Tobias Sikosek; Erich Bornberg-Bauer; Hue Sun Chan
Evolutionary dynamics on protein bi-stability landscapes can potentially resolve adaptive conflicts.
PLoS computational biology 2012;8(9):e1002659.
2012: Marvin Mundry; Michael Sammeth; Erich Bornberg-Bauer; Philine G D Feulner
Evaluating characteristics of de novo assembly software on 454 transcriptome data: a simulation approach.
PloS one 2012;7(2):e31410.
2012: Anna R Kersting; Andrew D Moore; Erich Bornberg-Bauer; Sonja Grath
Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution.
Genome biology and evolution 2012;4(3):316-29.
2011: Susanne U Franssen; Jenny Gu; Ulrich C Klostermeier; Nina Bergmann; Erich Bornberg-Bauer; Philip Rosenstiel; Gidon Winters; Thorsten B H Reusch
Transcriptomic resilience to global warming in the seagrass Zostera marina, a marine foundation species.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(48):19276-81.
2011: Anna R Reineke; Erich Bornberg-Bauer; Jenny Gu
Evolutionary divergence and limits of conserved non-coding sequence detection in plant genomes.
Nucleic acids research 2011;39(14):6029-43.
2011: Susanne U Franssen; Roshan P Shrestha; Andrea Bräutigam; Erich Bornberg-Bauer; Andreas P M Weber
Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing.
BMC genomics 2011;12():227.
2011: Antonia M Ernst; Boris Rüping; Stephan B Jekat; Steffen Nordzieke; Anna R Reineke; Boje Müller; Erich Bornberg-Bauer; Dirk Prüfer; Gundula A Noll
The sieve element occlusion gene family in dicotyledonous plants.
Plant signaling & behavior 2011;6(1):151-3.
2011: Lothar Wissler; Francisco M Codoñer; Jenny Gu; Thorsten B H Reusch; Jeanine L Olsen; Gabriele Procaccini; Erich Bornberg-Bauer
Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life.
BMC evolutionary biology 2011;11():8.
2011: Andreas Schüler; Erich Bornberg-Bauer
The evolution of protein interaction networks.
Methods in molecular biology (Clifton, N.J.) 2011;696():273-89.
2010: Tao Chen; David Vernazobres; Tetsuya Yomo; Erich Bornberg-Bauer; Hue Sun Chan
Evolvability and single-genotype fluctuation in phenotypic properties: a simple heteropolymer model.
Biophysical journal 2010;98(11):2487-96.
2010: Erich Bornberg-Bauer; Linus Kramer
Robustness versus evolvability: a paradigm revisited.
HFSP journal 2010;4(3-4):105-8.
2010: Erich Bornberg-Bauer; Ann-Kathrin Huylmans; Tobias Sikosek
How do new proteins arise?
Current opinion in structural biology 2010;20(3):390-6.
2010: Boris Rüping; Antonia M Ernst; Stephan B Jekat; Steffen Nordzieke; Anna R Reineke; Boje Müller; Erich Bornberg-Bauer; Dirk Prüfer; Gundula A Noll
Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants.
BMC plant biology 2010;10():219.
2010: Erich Bornberg-Bauer
Signals: tinkering with domains.
Science signaling 2010;3(139):pe31.
2008: Andrew D Moore; Asa K Björklund; Diana Ekman; Erich Bornberg-Bauer; Arne Elofsson
Arrangements in the modular evolution of proteins.
Trends in biochemical sciences 2008;33(9):444-51.
2008: Thorsten B H Reusch; Amelie S Veron; Christoph Preuss; January Weiner; Lothar Wissler; Alfred Beck; Sven Klages; Michael Kube; Richard Reinhardt; Erich Bornberg-Bauer
Comparative analysis of expressed sequence tag (EST) libraries in the seagrass Zostera marina subjected to temperature stress.
Marine biotechnology (New York, N.Y.) 2008;10(3):297-309.
2008: Frauke Friedrichs; Liesbet Henckaerts; Severine Vermeire; Torsten Kucharzik; Tanja Seehafer; Maren Möller-Krull; Erich Bornberg-Bauer; Monika Stoll; January Weiner
The Crohn's disease susceptibility gene DLG5 as a member of the CARD interaction network.
Journal of molecular medicine (Berlin, Germany) 2008;86(4):423-32.
2008: Michaela Falb; Kerstin Müller; Lisa Königsmaier; Tanja Oberwinkler; Patrick Horn; Susanne von Gronau; Orland Gonzalez; Friedhelm Pfeiffer; Erich Bornberg-Bauer; Dieter Oesterhelt
Metabolism of halophilic archaea.
Extremophiles : life under extreme conditions 2008;12(2):177-96.
2008: January Weiner; Andrew D Moore; Erich Bornberg-Bauer
Just how versatile are domains?
BMC evolutionary biology 2008;8():285.
2008: Dion J Whitehead; Claus O Wilke; David Vernazobres; Erich Bornberg-Bauer
The look-ahead effect of phenotypic mutations.
Biology direct 2008;3():18.
2008: Hinrich Schulenburg; Marc P Hoeppner; January Weiner; Erich Bornberg-Bauer
Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans.
Immunobiology 2008;213(3-4):237-50.
2007: Francois Beaussart; January Weiner; Erich Bornberg-Bauer
Automated Improvement of Domain ANnotations using context analysis of domain arrangements (AIDAN).
Bioinformatics (Oxford, England) 2007;23(14):1834-6.
2007: Richard Wroe; Hue Sun Chan; Erich Bornberg-Bauer
A structural model of latent evolutionary potentials underlying neutral networks in proteins.
HFSP journal 2007;1(1):79-87.
2007: Joachim Kilian; Dion Whitehead; Jakub Horak; Dierk Wanke; Stefan Weinl; Oliver Batistic; Cecilia D'Angelo; Erich Bornberg-Bauer; Jörg Kudla; Klaus Harter
The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.
The Plant journal : for cell and molecular biology 2007;50(2):347-63.
2007: Gregory D Amoutzias; A S Veron; January Weiner; Marc Robinson-Rechavi; Erich Bornberg-Bauer; Stephen G Oliver; David L Robertson
One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
Molecular biology and evolution 2007;24(3):827-35.
2007: Amelie S Veron; Kerstin Kaufmann; Erich Bornberg-Bauer
Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins.
Molecular biology and evolution 2007;24(3):670-8.
2007: Gregory D Amoutzias; Elgar E Pichler; Nina Mian; David de Graaf; Anastasia Imsiridou; Marc Robinson-Rechavi; Erich Bornberg-Bauer; David L Robertson; Stephen G Oliver
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
BMC systems biology 2007;1():34.
2006: January Weiner; Francois Beaussart; Erich Bornberg-Bauer
Domain deletions and substitutions in the modular protein evolution.
The FEBS journal 2006;273(9):2037-47.
2006: January Weiner; Erich Bornberg-Bauer
Evolution of circular permutations in multidomain proteins.
Molecular biology and evolution 2006;23(4):734-43.
2006: Mirco Gerke; Erich Bornberg-Bauer; Xiaoyi Jiang; Georg Fuellen
Finding common protein interaction patterns across organisms.
Evolutionary bioinformatics online 2006;2():45-52.
2006: Gregory D Amoutzias; Erich Bornberg-Bauer; Stephen G Oliver; David L Robertson
Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network.
BMC genomics 2006;7():107.
2005: Stefan Malonek; Christiane Bömke; Erich Bornberg-Bauer; María Cecilia Rojas; Peter Hedden; Paul Hopkins; Bettina Tudzynski
Distribution of gibberellin biosynthetic genes and gibberellin production in the Gibberella fujikuroi species complex.
Phytochemistry 2005;66(11):1296-311.
2005: January Weiner; Geraint Thomas; Erich Bornberg-Bauer
Rapid motif-based prediction of circular permutations in multi-domain proteins.
Bioinformatics (Oxford, England) 2005;21(7):932-7.
2005: Gregory D Amoutzias; January Weiner; Erich Bornberg-Bauer
Phylogenetic profiling of protein interaction networks in eukaryotic transcription factors reveals focal proteins being ancestral to hubs.
Gene 2005;347(2):247-53.
2005: Erich Bornberg-Bauer; Francois Beaussart; Sarah K Kummerfeld; Sarah A Teichmann; January Weiner
The evolution of domain arrangements in proteins and interaction networks.
Cellular and molecular life sciences : CMLS 2005;62(4):435-45.
2005: Sarah A Teichmann; Erich Bornberg-Bauer; Nicholas M Luscombe
Transcriptional networking.
Genome biology 2005;6(9):344.
2005: Richard Wroe; Erich Bornberg-Bauer; Hue Sun Chan
Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: robustness of the superfunnel paradigm.
Biophysical journal 2005;88(1):118-31.
2004: Gregory D Amoutzias; David L Robertson; Stephen G Oliver; Erich Bornberg-Bauer
Convergent evolution of gene networks by single-gene duplications in higher eukaryotes.
EMBO reports 2004;5(3):274-9.
2004: Gregory D Amoutzias; David L Robertson; Erich Bornberg-Bauer
The evolution of protein interaction networks in regulatory proteins.
Comparative and functional genomics 2004;5(1):79-84.
2004: JE Mabey; Michael J Anderson; P F Giles; C J Miller; Teresa K Attwood; Norman W Paton; Erich Bornberg-Bauer; Geoff Robson; Stephen G Oliver; David W Denning
CADRE: the Central Aspergillus Data REpository.
Nucleic acids research 2004;32(Database issue):D401-5.
2002: Erich Bornberg-Bauer; January Weiner
A putative transcription factor inducing mobility in Mycoplasma pneumoniae.
Microbiology (Reading, England) 2002;148(Pt 12):3764-5.
2002: Erich Bornberg-Bauer; Norman W Paton
Conceptual data modelling for bioinformatics.
Briefings in bioinformatics 2002;3(2):166-80.
2002: Yan Cui; Wing H Wong; Erich Bornberg-Bauer; Hue Sun Chan
Recombinatoric exploration of novel folded structures: a heteropolymer-based model of protein evolutionary landscapes.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(2):809-14.
2002: Hue Sun Chan; Erich Bornberg-Bauer
Perspectives on protein evolution from simple exact models.
Applied bioinformatics 2002;1(3):121-44.
2002: Ursula Rost; Erich Bornberg-Bauer
TreeWiz: interactive exploration of huge trees.
Bioinformatics (Oxford, England) 2002;18(1):109-14.