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James Thomas

Research Profile

Genes & Molecular Sequences

Chemicals & Drugs

Physiology

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Jennifer Lachowiec; Tzitziki Lemus; Patrick J M Murphy; Jennifer L Nemhauser; James H Thomas; Christine Queitsch
The protein chaperone HSP90 can facilitate the divergence of gene duplicates.
James H Thomas; Sean Schneider
Coevolution of retroelements and tandem zinc finger genes.
Renee D George; Alexandra P MacKenzie; Graham McVicker; Sarah B Ng; Jay Shendure; Willie J Swanson; Rachel Diederich; James H Thomas
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection.

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All Publications

2013: Jennifer Lachowiec; Tzitziki Lemus; Patrick J M Murphy; Jennifer L Nemhauser; James H Thomas; Christine Queitsch
The protein chaperone HSP90 can facilitate the divergence of gene duplicates.
Genetics 2013;193(4):1269-77.
2011: James H Thomas; Sean Schneider
Coevolution of retroelements and tandem zinc finger genes.
Genome research 2011;21(11):1800-12.
2011: Renee D George; Alexandra P MacKenzie; Graham McVicker; Sarah B Ng; Jay Shendure; Willie J Swanson; Rachel Diederich; James H Thomas
Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection.
Genome research 2011;21(10):1686-94.
2010: Gholamali Jafari; Jan Burghoorn; Takehiro Kawano; Manoj Mathew; Catarina Mörck; Claes Axäng; Michael Ailion; James H Thomas; Joseph G Culotti; Peter Swoboda; Marc Pilon
Genetics of extracellular matrix remodeling during organ growth using the Caenorhabditis elegans pharynx model.
Genetics 2010;186(3):969-82.
2009: James H Thomas; Ryan O Emerson; Jay Shendure
Extraordinary molecular evolution in the PRDM9 fertility gene.
PloS one 2009;4(12):e8505.
2009: James H Thomas; Ryan O Emerson
Evolution of C2H2-zinc finger genes revisited.
BMC evolutionary biology 2009;9():51.
2009: Ryan O Emerson; James H Thomas
Adaptive evolution in zinc finger transcription factors.
PLoS genetics 2009;5(1):e1000325.
2008: David Reiner; Michael Ailion; James H Thomas; Barbara J Meyer
C. elegans anaplastic lymphoma kinase ortholog SCD-2 controls dauer formation by modulating TGF-beta signaling.
Current biology : CB 2008;18(15):1101-9.
2008: David Biron; Sara Wasserman; James H Thomas; Aravinthan D T Samuel; Piali Sengupta
An olfactory neuron responds stochastically to temperature and modulates Caenorhabditis elegans thermotactic behavior.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(31):11002-7.
2008: James H Thomas
Genome evolution in Caenorhabditis.
Briefings in functional genomics & proteomics 2008;7(3):211-6.
2008: Erica D Smith; Mitsuhiro Tsuchiya; Lindsay A Fox; Nick Dang; Di Hu; Emily O Kerr; Elijah D Johnston; Bie N Tchao; Diana N Pak; K Linnea Welton; Daniel E L Promislow; James H Thomas; Matt Kaeberlein; Brian Kennedy
Quantitative evidence for conserved longevity pathways between divergent eukaryotic species.
Genome research 2008;18(4):564-70.
2008: James H Thomas; Hugh M Robertson
The Caenorhabditis chemoreceptor gene families.
BMC biology 2008;6():42.
2007: Takao Inoue; Michael Ailion; Shirley Poon; Hannah K Kim; James H Thomas; Paul W Sternberg
Genetic analysis of dauer formation in Caenorhabditis briggsae.
Genetics 2007;177(2):809-18.
2007: James H Thomas
Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates.
PLoS genetics 2007;3(5):e67.
2007: Zhongying Zhao; James H Thomas; Nansheng Chen; Jonathan A Sheps; David Baillie
Comparative genomics and adaptive selection of the ATP-binding-cassette gene family in caenorhabditis species.
Genetics 2007;175(3):1407-18.
2007: Joshua J McElwee; Eugene Schuster; Eric Blanc; Matthew D W Piper; James H Thomas; Dhaval S Patel; Colin Selman; Dominic J Withers; Janet M Thornton; Linda Partridge; David Gems
Evolutionary conservation of regulated longevity assurance mechanisms.
Genome biology 2007;8(7):R132.
2006: Tammi L Kaeberlein; Erica D Smith; Mitsuhiro Tsuchiya; K Linnea Welton; James H Thomas; Stanley Fields; Brian Kennedy; Matt Kaeberlein
Lifespan extension in Caenorhabditis elegans by complete removal of food.
Aging cell 2006;5(6):487-94.
2006: Jeanna M Wheeler; James H Thomas
Identification of a novel gene family involved in osmotic stress response in Caenorhabditis elegans.
Genetics 2006;174(3):1327-36.
2006: James H Thomas
Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants.
Genome research 2006;16(8):1017-30.
2006: James H Thomas
Concerted evolution of two novel protein families in Caenorhabditis species.
Genetics 2006;172(4):2269-81.
2006: Robert K M Choy; John M Kemner; James H Thomas
Fluoxetine-resistance genes in Caenorhabditis elegans function in the intestine and may act in drug transport.
Genetics 2006;172(2):885-92.
2006: David Reiner; David Weinshenker; Hong Tian; James H Thomas; Kiyoji Nishiwaki; Johji Miwa; Todd Gruninger; Brigitte LeBoeuf; L Rene Garcia
Behavioral genetics of caenorhabditis elegans unc-103-encoded erg-like K(+) channel.
Journal of neurogenetics 2006;20(1-2):41-66.
2006: James H Thomas
Analysis of homologous gene clusters in Caenorhabditis elegans reveals striking regional cluster domains.
Genetics 2006;172(1):127-43.
2005: Evgeni Efimenko; Kerry Bubb; Ho Yi Mak; Ted Holzman; Michel R Leroux; Gary Ruvkun; James H Thomas; Peter Swoboda
Analysis of xbx genes in C. elegans.
Development (Cambridge, England) 2005;132(8):1923-34.
2005: Mary K Stewart; Nathaniel L Clark; Gennifer Merrihew; Evan M Galloway; James H Thomas
High genetic diversity in the chemoreceptor superfamily of Caenorhabditis elegans.
Genetics 2005;169(4):1985-96.
2005: James H Thomas; Joanna L Kelley; Hugh M Robertson; Kiet A Ly; Willie J Swanson
Adaptive evolution in the SRZ chemoreceptor families of Caenorhabditis elegans and Caenorhabditis briggsae.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(12):4476-81.
2004: Jie Li; Gemma Brown; Michael Ailion; Samuel Lee; James H Thomas
NCR-1 and NCR-2, the C. elegans homologs of the human Niemann-Pick type C1 disease protein, function upstream of DAF-9 in the dauer formation pathways.
Development (Cambridge, England) 2004;131(22):5741-52.
2004: Christina I Petersen; Toni R McFarland; Svetlana Z Stepanovic; Ping Yang; David Reiner; Kenshi Hayashi; Alfred L George; Dan Mark Roden; James H Thomas; Jeffrey R Balser
In vivo identification of genes that modify ether-a-go-go-related gene activity in Caenorhabditis elegans may also affect human cardiac arrhythmia.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(32):11773-8.
2003: Michael Ailion; James H Thomas
Isolation and characterization of high-temperature-induced Dauer formation mutants in Caenorhabditis elegans.
Genetics 2003;165(1):127-44.
2003: Jenny C Schafer; Courtney J. Haycraft; James H Thomas; Bradley K Yoder; Peter Swoboda
XBX-1 encodes a dynein light intermediate chain required for retrograde intraflagellar transport and cilia assembly in Caenorhabditis elegans.
Molecular biology of the cell 2003;14(5):2057-70.
2003: Joshua J McElwee; Kerry Bubb; James H Thomas
Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16.
Aging cell 2003;2(2):111-21.
2001: Courtney J. Haycraft; Peter Swoboda; Patrick D Taulman; James H Thomas; Bradley K Yoder
The C. elegans homolog of the murine cystic kidney disease gene Tg737 functions in a ciliogenic pathway and is disrupted in osm-5 mutant worms.
Development (Cambridge, England) 2001;128(9):1493-505.
2001: James H Thomas
Nematodes are smarter than you think.
Neuron 2001;30(1):7-8.
2001: M Robatzek; Timothy Niacaris; K Steger; Leon Avery; James H Thomas
eat-11 encodes GPB-2, a Gbeta(5) ortholog that interacts with G(o)alpha and G(q)alpha to regulate C. elegans behavior.
Current biology : CB 2001;11(4):288-93.
2000: M Robatzek; James H Thomas
Calcium/calmodulin-dependent protein kinase II regulates Caenorhabditis elegans locomotion in concert with a G(o)/G(q) signaling network.
Genetics 2000;156(3):1069-82.
2000: Michael Ailion; James H Thomas
Dauer formation induced by high temperatures in Caenorhabditis elegans.
Genetics 2000;156(3):1047-67.
2000: T Inoue; James H Thomas
Suppressors of transforming growth factor-beta pathway mutants in the Caenorhabditis elegans dauer formation pathway.
Genetics 2000;156(3):1035-46.
2000: M T Kunkel; Duncan B Johnstone; James H Thomas; Lawrence Salkoff
Mutants of a temperature-sensitive two-P domain potassium channel.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2000;20(20):7517-24.
2000: S A Daniels; Michael Ailion; James H Thomas; Piali Sengupta
egl-4 acts through a transforming growth factor-beta/SMAD pathway in Caenorhabditis elegans to regulate multiple neuronal circuits in response to sensory cues.
Genetics 2000;156(1):123-41.
2000: D A Birnby; E M Link; J J Vowels; H Tian; P L Colacurcio; James H Thomas
A transmembrane guanylyl cyclase (DAF-11) and Hsp90 (DAF-21) regulate a common set of chemosensory behaviors in caenorhabditis elegans.
Genetics 2000;155(1):85-104.
2000: Peter Swoboda; H T Adler; James H Thomas
The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans.
Molecular cell 2000;5(3):411-21.
2000: Helen M Chamberlin; James H Thomas
The bromodomain protein LIN-49 and trithorax-related protein LIN-59 affect development and gene expression in Caenorhabditis elegans.
Development (Cambridge, England) 2000;127(4):713-23.
2000: T Inoue; James H Thomas
Targets of TGF-beta signaling in Caenorhabditis elegans dauer formation.
Developmental biology 2000;217(1):192-204.
1999: C Darby; Christine L Cosma; James H Thomas; Colin Manoil
Lethal paralysis of Caenorhabditis elegans by Pseudomonas aeruginosa.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(26):15202-7.
1999: David Weinshenker; Aguan Wei; Lawrence Salkoff; James H Thomas
Block of an ether-a-go-go-like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1999;19(22):9831-40.
1999: David Reiner; E M Newton; H Tian; James H Thomas
Diverse behavioural defects caused by mutations in Caenorhabditis elegans unc-43 CaM kinase II.
Nature 1999;402(6758):199-203.
1999: Helen M Chamberlin; K B Brown; P W Sternberg; James H Thomas
Characterization of seven genes affecting Caenorhabditis elegans hindgut development.
Genetics 1999;153(2):731-42.
1999: R K Choy; James H Thomas
Fluoxetine-resistant mutants in C. elegans define a novel family of transmembrane proteins.
Molecular cell 1999;4(2):143-52.
1999: Michael Ailion; Takao Inoue; C I Weaver; R W Holdcraft; James H Thomas
Neurosecretory control of aging in Caenorhabditis elegans.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(13):7394-7.
1999: S Paradis; Michael Ailion; A Toker; James H Thomas; Gary Ruvkun
A PDK1 homolog is necessary and sufficient to transduce AGE-1 PI3 kinase signals that regulate diapause in Caenorhabditis elegans.
Genes & development 1999;13(11):1438-52.
1998: James H Thomas; T Inoue
Methuselah meets diabetes.
BioEssays : news and reviews in molecular, cellular and developmental biology 1998;20(2):113-5.
1997: F E Tax; James H Thomas; E L Ferguson; H Robert Horvitz
Identification and characterization of genes that interact with lin-12 in Caenorhabditis elegans.
Genetics 1997;147(4):1675-95.
1997: Helen M Chamberlin; R E Palmer; Anna P. Newman; P W Sternberg; David Baillie; James H Thomas
The PAX gene egl-38 mediates developmental patterning in Caenorhabditis elegans.
Development (Cambridge, England) 1997;124(20):3919-28.
1997: D B Johnstone; Aguan Wei; A Butler; Lawrence Salkoff; James H Thomas
Behavioral defects in C. elegans egl-36 mutants result from potassium channels shifted in voltage-dependence of activation.
Neuron 1997;19(1):151-64.
1997: K Iwasaki; J Staunton; O Saifee; Michael L Nonet; James H Thomas
aex-3 encodes a novel regulator of presynaptic activity in C. elegans.
Neuron 1997;18(4):613-22.
1997: K Iwasaki; James H Thomas
Genetics in rhythm.
Trends in genetics : TIG 1997;13(3):111-5.
1996: W S Schackwitz; T Inoue; James H Thomas
Chemosensory neurons function in parallel to mediate a pheromone response in C. elegans.
Neuron 1996;17(4):719-28.
1996: E A Malone; T Inoue; James H Thomas
Genetic analysis of the roles of daf-28 and age-1 in regulating Caenorhabditis elegans dauer formation.
Genetics 1996;143(3):1193-205.
1995: David Reiner; D Weinshenker; James H Thomas
Analysis of dominant mutations affecting muscle excitation in Caenorhabditis elegans.
Genetics 1995;141(3):961-76.
1995: K Iwasaki; D W Liu; James H Thomas
Genes that control a temperature-compensated ultradian clock in Caenorhabditis elegans.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(22):10317-21.
1995: D Weinshenker; G Garriga; James H Thomas
Genetic and pharmacological analysis of neurotransmitters controlling egg laying in C. elegans.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1995;15(10):6975-85.
1995: David Reiner; James H Thomas
Reversal of a muscle response to GABA during C. elegans male development.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1995;15(9):6094-102.
1995: James H Thomas
Genomic imprinting proposed as a surveillance mechanism for chromosome loss.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(2):480-2.
1994: J J Vowels; James H Thomas
Multiple chemosensory defects in daf-11 and daf-21 mutants of Caenorhabditis elegans.
Genetics 1994;138(2):303-16.
1994: James H Thomas
The mind of a worm.
Science (New York, N.Y.) 1994;264(5166):1698-9.
1994: D W Liu; James H Thomas
Regulation of a periodic motor program in C. elegans.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1994;14(4):1953-62.
1994: F E Tax; J J Yeargers; James H Thomas
Sequence of C. elegans lag-2 reveals a cell-signalling domain shared with Delta and Serrate of Drosophila.
Nature 1994;368(6467):150-4.
1994: E A Malone; James H Thomas
A screen for nonconditional dauer-constitutive mutations in Caenorhabditis elegans.
Genetics 1994;136(3):879-86.
1993: James H Thomas
Chemosensory regulation of development in C. elegans.
BioEssays : news and reviews in molecular, cellular and developmental biology 1993;15(12):791-7.
1993: James H Thomas
Thinking about genetic redundancy.
Trends in genetics : TIG 1993;9(11):395-9.
1993: James H Thomas; D A Birnby; J J Vowels
Evidence for parallel processing of sensory information controlling dauer formation in Caenorhabditis elegans.
Genetics 1993;134(4):1105-17.
1992: J J Vowels; James H Thomas
Genetic analysis of chemosensory control of dauer formation in Caenorhabditis elegans.
Genetics 1992;130(1):105-23.
1990: James H Thomas
Genetic analysis of defecation in Caenorhabditis elegans.
Genetics 1990;124(4):855-72.