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James Thomas
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Research Profile (preview)
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Network (preview)
8
Ailion, Michael
6
Reiner, David
4
Swoboda, Peter
3
Chamberlin, Helen
3
Salkoff, Lawrence
2
Smith, Erica
2
McElwee, Joshua
2
Inoue, Takao
2
Sengupta, Piali
2
Tsuchiya, Mitsuhiro
2
Wei, Aguan
2
Weinshenker, David
2
Haycraft, Courtney J.
2
Kennedy, Brian
2
Kaeberlein, Matt
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All Publications
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2009: Emerson Ryan O; Thomas James H
Adaptive evolution in zinc finger transcription factors.
PLoS genetics 2009;5(1):e1000325.
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2009: Thomas James H; Emerson Ryan O
Evolution of C2H2-zinc finger genes revisited.
BMC evolutionary biology 2009;9():51.
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2008: Reiner David J; Ailion Michael; Thomas James H; Meyer Barbara J
C. elegans anaplastic lymphoma kinase ortholog SCD-2 controls dauer formation by modulating TGF-beta signaling.
Current biology : CB 2008;18(15):1101-9.
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2008: Biron David; Wasserman Sara; Thomas James H; Samuel Aravinthan D T; Sengupta Piali
An olfactory neuron responds stochastically to temperature and modulates Caenorhabditis elegans thermotactic behavior.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(31):11002-7.
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2008: Thomas James H
Genome evolution in Caenorhabditis.
Briefings in functional genomics & proteomics 2008;7(3):211-6.
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2008: Smith Erica D; Tsuchiya Mitsuhiro; Fox Lindsay A; Dang Nick; Hu Di; Kerr Emily O; Johnston Elijah D; Tchao Bie N; Pak Diana N; Welton K Linnea; Promislow Daniel E L; Thomas James H; Kaeberlein Matt; Kennedy Brian K
Quantitative evidence for conserved longevity pathways between divergent eukaryotic species.
Genome research 2008;18(4):564-70.
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2008: Thomas James H; Robertson Hugh M
The Caenorhabditis chemoreceptor gene families.
BMC biology 2008;6():42.
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2007: Inoue Takao; Ailion Michael; Poon Shirley; Kim Hannah K; Thomas James H; Sternberg Paul W
Genetic analysis of dauer formation in Caenorhabditis briggsae.
Genetics 2007;177(2):809-18.
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2007: Thomas James H
Rapid birth-death evolution specific to xenobiotic cytochrome P450 genes in vertebrates.
PLoS genetics 2007;3(5):e67.
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2007: Zhao Zhongying; Thomas James H; Chen Nansheng; Sheps Jonathan A; Baillie David L
Comparative genomics and adaptive selection of the ATP-binding-cassette gene family in caenorhabditis species.
Genetics 2007;175(3):1407-18.
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2007: McElwee Joshua J; Schuster Eugene; Blanc Eric; Piper Matthew D; Thomas James H; Patel Dhaval S; Selman Colin; Withers Dominic J; Thornton Janet M; Partridge Linda; Gems David
Evolutionary conservation of regulated longevity assurance mechanisms.
Genome biology 2007;8(7):R132.
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2006: Kaeberlein Tammi L; Smith Erica D; Tsuchiya Mitsuhiro; Welton K Linnea; Thomas James H; Fields Stanley; Kennedy Brian K; Kaeberlein Matt
Lifespan extension in Caenorhabditis elegans by complete removal of food.
Aging cell 2006;5(6):487-94.
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2006: Wheeler Jeanna M; Thomas James H
Identification of a novel gene family involved in osmotic stress response in Caenorhabditis elegans.
Genetics 2006;174(3):1327-36.
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2006: Thomas James H
Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants.
Genome research 2006;16(8):1017-30.
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2006: Thomas James H
Concerted evolution of two novel protein families in Caenorhabditis species.
Genetics 2006;172(4):2269-81.
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2006: Choy Robert K M; Kemner John M; Thomas James H
Fluoxetine-resistance genes in Caenorhabditis elegans function in the intestine and may act in drug transport.
Genetics 2006;172(2):885-92.
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2006: Reiner David J; Weinshenker David; Tian Hong; Thomas James H; Nishiwaki Kiyoji; Miwa Johji; Gruninger Todd; Leboeuf Brigitte; Garcia L Rene
Behavioral genetics of caenorhabditis elegans unc-103-encoded erg-like K(+) channel.
Journal of neurogenetics 2006;20(1-2):41-66.
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2006: Thomas James H
Analysis of homologous gene clusters in Caenorhabditis elegans reveals striking regional cluster domains.
Genetics 2006;172(1):127-43.
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2005: Efimenko Evgeni; Bubb Kerry; Mak Ho Yi; Holzman Ted; Leroux Michel R; Ruvkun Gary; Thomas James H; Swoboda Peter
Analysis of xbx genes in C. elegans.
Development (Cambridge, England) 2005;132(8):1923-34.
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2005: Stewart Mary K; Clark Nathaniel L; Merrihew Gennifer; Galloway Evan M; Thomas James H
High genetic diversity in the chemoreceptor superfamily of Caenorhabditis elegans.
Genetics 2005;169(4):1985-96.
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2005: Thomas James H; Kelley Joanna L; Robertson Hugh M; Ly Kim; Swanson Willie J
Adaptive evolution in the SRZ chemoreceptor families of Caenorhabditis elegans and Caenorhabditis briggsae.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(12):4476-81.
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2004: Li Jie; Brown Gemma; Ailion Michael; Lee Samuel; Thomas James H
NCR-1 and NCR-2, the C. elegans homologs of the human Niemann-Pick type C1 disease protein, function upstream of DAF-9 in the dauer formation pathways.
Development (Cambridge, England) 2004;131(22):5741-52.
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2004: Petersen Christina I; McFarland Toni R; Stepanovic Svetlana Z; Yang Ping; Reiner David J; Hayashi Kenshi; George Alfred L; Roden Dan M; Thomas James H; Balser Jeffrey R
In vivo identification of genes that modify ether-a-go-go-related gene activity in Caenorhabditis elegans may also affect human cardiac arrhythmia.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(32):11773-8.
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2003: Ailion Michael; Thomas James H
Isolation and characterization of high-temperature-induced Dauer formation mutants in Caenorhabditis elegans.
Genetics 2003;165(1):127-44.
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2003: Schafer Jenny C; Haycraft Courtney J; Thomas James H; Yoder Bradley K; Swoboda Peter
XBX-1 encodes a dynein light intermediate chain required for retrograde intraflagellar transport and cilia assembly in Caenorhabditis elegans.
Molecular biology of the cell 2003;14(5):2057-70.
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2003: McElwee Joshua; Bubb Kerry; Thomas James H
Transcriptional outputs of the Caenorhabditis elegans forkhead protein DAF-16.
Aging cell 2003;2(2):111-21.
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2001: Haycraft C J; Swoboda P; Taulman P D; Thomas J H; Yoder B K
The C. elegans homolog of the murine cystic kidney disease gene Tg737 functions in a ciliogenic pathway and is disrupted in osm-5 mutant worms.
Development (Cambridge, England) 2001;128(9):1493-505.
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2001: Thomas J H
Nematodes are smarter than you think.
Neuron 2001;30(1):7-8.
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2001: Robatzek M; Niacaris T; Steger K; Avery L; Thomas J H
eat-11 encodes GPB-2, a Gbeta(5) ortholog that interacts with G(o)alpha and G(q)alpha to regulate C. elegans behavior.
Current biology : CB 2001;11(4):288-93.
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2000: Robatzek M; Thomas J H
Calcium/calmodulin-dependent protein kinase II regulates Caenorhabditis elegans locomotion in concert with a G(o)/G(q) signaling network.
Genetics 2000;156(3):1069-82.
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2000: Ailion M; Thomas J H
Dauer formation induced by high temperatures in Caenorhabditis elegans.
Genetics 2000;156(3):1047-67.
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2000: Inoue T; Thomas J H
Suppressors of transforming growth factor-beta pathway mutants in the Caenorhabditis elegans dauer formation pathway.
Genetics 2000;156(3):1035-46.
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2000: Kunkel M T; Johnstone D B; Thomas J H; Salkoff L
Mutants of a temperature-sensitive two-P domain potassium channel.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2000;20(20):7517-24.
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2000: Daniels S A; Ailion M; Thomas J H; Sengupta P
egl-4 acts through a transforming growth factor-beta/SMAD pathway in Caenorhabditis elegans to regulate multiple neuronal circuits in response to sensory cues.
Genetics 2000;156(1):123-41.
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2000: Birnby D A; Link E M; Vowels J J; Tian H; Colacurcio P L; Thomas J H
A transmembrane guanylyl cyclase (DAF-11) and Hsp90 (DAF-21) regulate a common set of chemosensory behaviors in caenorhabditis elegans.
Genetics 2000;155(1):85-104.
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2000: Swoboda P; Adler H T; Thomas J H
The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans.
Molecular cell 2000;5(3):411-21.
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2000: Chamberlin H M; Thomas J H
The bromodomain protein LIN-49 and trithorax-related protein LIN-59 affect development and gene expression in Caenorhabditis elegans.
Development (Cambridge, England) 2000;127(4):713-23.
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2000: Inoue T; Thomas J H
Targets of TGF-beta signaling in Caenorhabditis elegans dauer formation.
Developmental biology 2000;217(1):192-204.
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1999: Darby C; Cosma C L; Thomas J H; Manoil C
Lethal paralysis of Caenorhabditis elegans by Pseudomonas aeruginosa.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(26):15202-7.
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1999: Reiner D J; Newton E M; Tian H; Thomas J H
Diverse behavioural defects caused by mutations in Caenorhabditis elegans unc-43 CaM kinase II.
Nature 1999;402(6758):199-203.
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1999: Weinshenker D; Wei A; Salkoff L; Thomas J H
Block of an ether-a-go-go-like K(+) channel by imipramine rescues egl-2 excitation defects in Caenorhabditis elegans.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1999;19(22):9831-40.
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1999: Chamberlin H M; Brown K B; Sternberg P W; Thomas J H
Characterization of seven genes affecting Caenorhabditis elegans hindgut development.
Genetics 1999;153(2):731-42.
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1999: Choy R K; Thomas J H
Fluoxetine-resistant mutants in C. elegans define a novel family of transmembrane proteins.
Molecular cell 1999;4(2):143-52.
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1999: Ailion M; Inoue T; Weaver C I; Holdcraft R W; Thomas J H
Neurosecretory control of aging in Caenorhabditis elegans.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(13):7394-7.
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1999: Paradis S; Ailion M; Toker A; Thomas J H; Ruvkun G
A PDK1 homolog is necessary and sufficient to transduce AGE-1 PI3 kinase signals that regulate diapause in Caenorhabditis elegans.
Genes & development 1999;13(11):1438-52.
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1998: Thomas J H; Inoue T
Methuselah meets diabetes.
BioEssays : news and reviews in molecular, cellular and developmental biology 1998;20(2):113-5.
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1997: Tax F E; Thomas J H; Ferguson E L; Horvitz H R
Identification and characterization of genes that interact with lin-12 in Caenorhabditis elegans.
Genetics 1997;147(4):1675-95.
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1997: Chamberlin H M; Palmer R E; Newman A P; Sternberg P W; Baillie D L; Thomas J H
The PAX gene egl-38 mediates developmental patterning in Caenorhabditis elegans.
Development (Cambridge, England) 1997;124(20):3919-28.
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1997: Johnstone D B; Wei A; Butler A; Salkoff L; Thomas J H
Behavioral defects in C. elegans egl-36 mutants result from potassium channels shifted in voltage-dependence of activation.
Neuron 1997;19(1):151-64.
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1997: Iwasaki K; Staunton J; Saifee O; Nonet M; Thomas J H
aex-3 encodes a novel regulator of presynaptic activity in C. elegans.
Neuron 1997;18(4):613-22.
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1997: Iwasaki K; Thomas J H
Genetics in rhythm.
Trends in genetics : TIG 1997;13(3):111-5.
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1996: Schackwitz W S; Inoue T; Thomas J H
Chemosensory neurons function in parallel to mediate a pheromone response in C. elegans.
Neuron 1996;17(4):719-28.
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1996: Malone E A; Inoue T; Thomas J H
Genetic analysis of the roles of daf-28 and age-1 in regulating Caenorhabditis elegans dauer formation.
Genetics 1996;143(3):1193-205.
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1995: Reiner D J; Weinshenker D; Thomas J H
Analysis of dominant mutations affecting muscle excitation in Caenorhabditis elegans.
Genetics 1995;141(3):961-76.
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1995: Iwasaki K; Liu D W; Thomas J H
Genes that control a temperature-compensated ultradian clock in Caenorhabditis elegans.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(22):10317-21.
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1995: Weinshenker D; Garriga G; Thomas J H
Genetic and pharmacological analysis of neurotransmitters controlling egg laying in C. elegans.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1995;15(10):6975-85.
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1995: Reiner D J; Thomas J H
Reversal of a muscle response to GABA during C. elegans male development.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1995;15(9):6094-102.
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1995: Thomas J H
Genomic imprinting proposed as a surveillance mechanism for chromosome loss.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(2):480-2.
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1994: Vowels J J; Thomas J H
Multiple chemosensory defects in daf-11 and daf-21 mutants of Caenorhabditis elegans.
Genetics 1994;138(2):303-16.
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1994: Thomas J H
The mind of a worm.
Science (New York, N.Y.) 1994;264(5166):1698-9.
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1994: Liu D W; Thomas J H
Regulation of a periodic motor program in C. elegans.
The Journal of neuroscience : the official journal of the Society for Neuroscience 1994;14(4):1953-62.
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1994: Tax F E; Yeargers J J; Thomas J H
Sequence of C. elegans lag-2 reveals a cell-signalling domain shared with Delta and Serrate of Drosophila.
Nature 1994;368(6467):150-4.
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1994: Malone E A; Thomas J H
A screen for nonconditional dauer-constitutive mutations in Caenorhabditis elegans.
Genetics 1994;136(3):879-86.
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1993: Thomas J H
Chemosensory regulation of development in C. elegans.
BioEssays : news and reviews in molecular, cellular and developmental biology 1993;15(12):791-7.
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1993: Thomas J H
Thinking about genetic redundancy.
Trends in genetics : TIG 1993;9(11):395-9.
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1993: Thomas J H; Birnby D A; Vowels J J
Evidence for parallel processing of sensory information controlling dauer formation in Caenorhabditis elegans.
Genetics 1993;134(4):1105-17.
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1992: Vowels J J; Thomas J H
Genetic analysis of chemosensory control of dauer formation in Caenorhabditis elegans.
Genetics 1992;130(1):105-23.
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1990: Thomas J H
Genetic analysis of defecation in Caenorhabditis elegans.
Genetics 1990;124(4):855-72.
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