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Yasuhiro Tomaru

Research Profile

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Mouse

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Oligonucleotide Array Sequence Analysis

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Ryota Hasegawa; Yoshihide Hayashizaki; Harukazu Suzuki; Yasuhiro Tomaru; Michiel de Hoon; Jay W Shin
Identification of ZNF395 as a novel modulator of adipogenesis.
Atsutaka Kubosaki; Jay W Shin; Christophe Simon; Yoshinari Ando; Erina Furuhata; Ryota Hasegawa; Yoshihide Hayashizaki; Takahiro Suzuki; Yasuhiro Tomaru; Harukazu Suzuki
CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.
Yoshinari Ando; A Maxwell Burroughs; piero carninci; Joe Chiba; Hisashi Hirano; Yoko Ino; Hideya Kawaji; Ryuichiro Kimura; Atsutaka Kubosaki; Ayako Morinaga; Harukazu Suzuki; Maiko Tagata; Yasuhiro Tomaru; Yoshihide Hayashizaki
Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells.

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All Publications

2013: Ryota Hasegawa; Yoshihide Hayashizaki; Harukazu Suzuki; Yasuhiro Tomaru; Michiel de Hoon; Jay W Shin
Identification of ZNF395 as a novel modulator of adipogenesis.
Experimental cell research 2013;319(3):68-76.
2012: Atsutaka Kubosaki; Jay W Shin; Christophe Simon; Yoshinari Ando; Erina Furuhata; Ryota Hasegawa; Yoshihide Hayashizaki; Takahiro Suzuki; Yasuhiro Tomaru; Harukazu Suzuki
CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.
Biochemical and biophysical research communications 2012;426(1):141-7.
2011: Yoshinari Ando; A Maxwell Burroughs; piero carninci; Joe Chiba; Hisashi Hirano; Yoko Ino; Hideya Kawaji; Ryuichiro Kimura; Atsutaka Kubosaki; Ayako Morinaga; Harukazu Suzuki; Maiko Tagata; Yasuhiro Tomaru; Yoshihide Hayashizaki
Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells.
PloS one 2011;6(8):e23385.
2011: A Maxwell Burroughs; Yoshinari Ando; Yasuhiro Tomaru; Harukazu Suzuki; Yoshihide Hayashizaki; Michiel Jan Laurens de Hoon; Carsten O Daub
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin.
RNA biology 2011;8(1):158-77.
2010: Morana Vitezic; Timo Lassmann; Alistair R R Forrest; Masanori Suzuki; Yasuhiro Tomaru; Jun Kawai; piero carninci; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten O Daub
Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Nucleic acids research 2010;38(22):8141-8.
2010: A Maxwell Burroughs; Yoshinari Ando; Michiel J L de Hoon; Yasuhiro Tomaru; Takahiro Nishibu; Ryo Ukekawa; Taku Funakoshi; Tsutomu Kurokawa; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten O Daub
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.
Genome research 2010;20(10):1398-410.
2010: Atsutaka Kubosaki; Gabriella Lindgren; Michihira Tagami; Christophe Simon; Yasuhiro Tomaru; Hisashi Miura; Takahiro Suzuki; Erik Arner; Alistair R R Forrest; Katharine M Irvine; Kate Schroder; Yuki Hasegawa; Mutsumi Kanamori-Katayama; Michael Rehli; David A Hume; Jun Kawai; Masanori Suzuki; Harukazu Suzuki; Yoshihide Hayashizaki
The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.
Molecular immunology 2010;47(14):2295-302.
2010: Alistair Forrest; Mutsumi Kanamori-Katayama; Yasuhiro Tomaru; T Lassmann; N Ninomiya; Y Takahashi; M J L de Hoon; Atsutaka Kubosaki; A Kaiho; M Suzuki; Jun Yasuda; Jun Kawai; Yoshihide Hayashizaki; D A Hume; Harukazu Suzuki
Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation.
Leukemia 2010;24(2):460-6.
2009: Yasuhiro Tomaru; Christophe Simon; Alistair Forrest; Hisashi Miura; Atsutaka Kubosaki; Yoshihide Hayashizaki; Masanori Suzuki
Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis.
Genome biology 2009;10(11):R121.
2005: Hiromi Nishida; Takahiro Suzuki; Hiroki Ookawa; Yasuhiro Tomaru; Yoshihide Hayashizaki
Comparative analysis of expression of histone H2a genes in mouse.
BMC genomics 2005;6():108.
2005: Hiromi Nishida; Yasuhiro Tomaru; Yuko Oho; Yoshihide Hayashizaki
Naturally occurring antisense RNA of histone H2a in mouse cultured cell lines.
BMC genetics 2005;6():23.
2005: Hiromi Nishida; Takahiro Suzuki; Yasuhiro Tomaru; Yoshihide Hayashizaki
A novel replication-independent histone H2a gene in mouse.
BMC genetics 2005;6():10.
2004: Itoshi Nikaido; Chika Saito; Akiko Wakamoto; Yasuhiro Tomaru; Takahiro Arakawa; Yoshihide Hayashizaki; Yasushi Okazaki
EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes.
Nucleic acids research 2004;32(Database issue):D548-51.
2003: Hidemasa Bono; Ken Yagi; Takeya Kasukawa; Itoshi Nikaido; Naoko Tominaga; Rika Miki; Yosuke Mizuno; Yasuhiro Tomaru; Hitoshi Goto; Hiroyuki Nitanda; Daisuke Shimizu; Hirochika Makino; Tomoyuki Morita; Junshin Fujiyama; Takehito Sakai; Takashi Shimoji; David A Hume; Yoshihide Hayashizaki; Yasushi Okazaki
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.
Genome research 2003;13(6B):1318-23.
2002: Yasushi Ichikawa; Takashi Ishikawa; Shinji Takahashi; Yohei Hamaguchi; Tomoyuki Morita; Itaru Nishizuka; Shigeki Yamaguchi; Itaru Endo; Hideyuki Ike; Shinji Togo; Shigeo Oki; Hiroshi Shimada; Koji Kadota; Shugo Nakamura; Hitoshi Goto; Hiroyuki Nitanda; Susumu Satomi; Takehito Sakai; Ichiei Narita; Fumitake Gejyo; Yasuhiro Tomaru; Kentaro Shimizu; Yoshihide Hayashizaki; Yasushi Okazaki
Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method.
Biochemical and biophysical research communications 2002;296(2):497-506.
2002: Sei Komatsu; Hidenori Kiyosawa; Atsushi Yoshiki; Yasushi Okazaki; Masayasu Yoshino; Yasuhiro Tomaru; Sachihiko Watanabe; Masami Muramatsu; Moriaki Kusakabe; Yoshihide Hayashizaki
Identification of seven loci for static glucokinesis and dynamic glucokinesis in mice.
Mammalian genome : official journal of the International Mammalian Genome Society 2002;13(6):293-8.
2002: Yosuke Mizuno; Yusuke Sotomaru; Yukiko Katsuzawa; Tomohiro Kono; Makiko Meguro; Mitsuo Oshimura; Jun Kawai; Yasuhiro Tomaru; Hidenori Kiyosawa; Itoshi Nikaido; Hiroshi Amanuma; Yoshihide Hayashizaki; Yasushi Okazaki
Asb4, Ata3, and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray.
Biochemical and biophysical research communications 2002;290(5):1499-505.
2002: Tomoyuki Morita; Shinji Togo; Toru Kubota; Nobuyuki Kamimukai; Itaru Nishizuka; Takatoshi Kobayashi; Yasushi Ichikawa; Takashi Ishikawa; Shinji Takahashi; Kenichi Matsuo; Yasuhiro Tomaru; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Mechanism of postoperative liver failure after excessive hepatectomy investigated using a cDNA microarray.
Journal of hepato-biliary-pancreatic surgery 2002;9(3):352-9.
2002: Itaru Nishizuka; Takashi Ishikawa; Yohei Hamaguchi; Masako Kamiyama; Yasushi Ichikawa; Koji Kadota; Rika Miki; Yasuhiro Tomaru; Yosuke Mizuno; Naoko Tominaga; Rieko Yano; Hitoshi Goto; Hiroyuki Nitanda; Shinji Togo; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Analysis of gene expression involved in brain metastasis from breast cancer using cDNA microarray.
Breast cancer (Tokyo, Japan) 2002;9(1):26-32.
2001: Rika Miki; Koji Kadota; Hidemasa Bono; Yosuke Mizuno; Yasuhiro Tomaru; piero carninci; Masayoshi Itoh; Kazuhiro Shibata; Jun Kawai; H Konno; S Watanabe; K Sato; Y Tokusumi; N Kikuchi; Y Ishii; Yohei Hamaguchi; Itaru Nishizuka; Hitoshi Goto; Hiroyuki Nitanda; S Satomi; A Yoshiki; M Kusakabe; Joe L DeRisi; Michael B Eisen; Vishwanath R Iyer; P O Brown; Masami Muramatsu; Hiroshi Shimada; Yasushi Okazaki; Yoshihide Hayashizaki
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2199-204.
1999: Masayoshi Itoh; T Kitsunai; J Akiyama; Kazuhiro Shibata; M Izawa; Jun Kawai; Yasuhiro Tomaru; piero carninci; Y Shibata; Y Ozawa; Masami Muramatsu; Yasushi Okazaki; Yoshihide Hayashizaki
Automated filtration-based high-throughput plasmid preparation system.
Genome research 1999;9(5):463-70.