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Christopher Town
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Research Profile (preview)
Genes & Molecular Sequences
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Network (preview)
19
Cheung, Foo
10
Haas, Brian
5
Cannon, Steven
5
Havey, Michael
5
Young, Nevin
5
Wortman, Jennifer
5
White, Owen
4
Roe, Bruce
4
VandenBosch, Kathryn
4
Maiti, Rama
3
McCallum, John
3
Mudge, Joann
3
Kuhl, Joseph
3
Jakse, Jernej
3
Chan, Agnes
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Geonetwork of Christopher Town (preview)
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All Publications
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2009: Cheung Foo; Trick Martin; Drou Nizar; Lim Yong Pyo; Park Jee-Young; Kwon Soo-Jin; Kim Jin-A; Scott Rod; Pires J Chris; Paterson Andrew H; Town Chris; Bancroft Ian
Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence.
The Plant cell 2009;21(7):1912-28.
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2009: Trick Martin; Cheung Foo; Drou Nizar; Fraser Fiona; Lobenhofer Edward K; Hurban Patrick; Magusin Andreas; Town Christopher D; Bancroft Ian
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.
BMC plant biology 2009;9():50.
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2008: Jakse Jernej; Meyer Jenelle D F; Suzuki Go; McCallum John; Cheung Foo; Town Christopher D; Havey Michael J
Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration.
Molecular genetics and genomics : MGG 2008;280(4):287-92.
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2007: Covert S F; Aoki T; O'Donnell K; Starkey D; Holliday A; Geiser D M; Cheung F; Town C; Strom A; Juba J; Scandiani M; Yang X B
Sexual reproduction in the soybean sudden death syndrome pathogen Fusarium tucumaniae.
Fungal genetics and biology : FG & B 2007;44(8):799-807.
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2007: Silverstein Kevin A T; Moskal William A; Wu Hank C; Underwood Beverly A; Graham Michelle A; Town Christopher D; VandenBosch Kathryn A
Small cysteine-rich peptides resembling antimicrobial peptides have been under-predicted in plants.
The Plant journal : for cell and molecular biology 2007;51(2):262-80.
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2007: Udvardi Michael K; Kakar Klementina; Wandrey Maren; Montanari Ombretta; Murray Jeremy; Andriankaja Andry; Zhang Ji-Yi; Benedito Vagner; Hofer Julie M I; Chueng Foo; Town Christopher D
Legume transcription factors: global regulators of plant development and response to the environment.
Plant physiology 2007;144(2):538-49.
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2007: Hernández Georgina; Ramírez Mario; Valdés-López Oswaldo; Tesfaye Mesfin; Graham Michelle A; Czechowski Tomasz; Schlereth Armin; Wandrey Maren; Erban Alexander; Cheung Foo; Wu Hank C; Lara Miguel; Town Christopher D; Kopka Joachim; Udvardi Michael K; Vance Carroll P
Phosphorus stress in common bean: root transcript and metabolic responses.
Plant physiology 2007;144(2):752-67.
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2007: Liu Jinyuan; Maldonado-Mendoza Ignacio; Lopez-Meyer Melina; Cheung Foo; Town Christopher D; Harrison Maria J
Arbuscular mycorrhizal symbiosis is accompanied by local and systemic alterations in gene expression and an increase in disease resistance in the shoots.
The Plant journal : for cell and molecular biology 2007;50(3):529-44.
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2007: Febrer Melanie; Cheung Foo; Town Christopher D; Cannon Steven B; Young Nevin D; Abberton Michael T; Jenkins Glyn; Milbourne Dan
Construction, characterization, and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2007;50(4):412-21.
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2007: Childs Kevin L; Hamilton John P; Zhu Wei; Ly Eugene; Cheung Foo; Wu Hank; Rabinowicz Pablo D; Town Chris D; Buell C Robin; Chan Agnes P
The TIGR Plant Transcript Assemblies database.
Nucleic acids research 2007;35(Database issue):D846-51.
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2007: Cheung Foo; Town Christopher D
A BAC end view of the Musa acuminata genome.
BMC plant biology 2007;7():29.
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2007: Udall Joshua A; Flagel Lex E; Cheung Foo; Woodward Andrew W; Hovav Ran; Rapp Ryan A; Swanson Jordan M; Lee Jinsuk J; Gingle Alan R; Nettleton Dan; Town Christopher D; Chen Z Jeffrey; Wendel Jonathan F
Spotted cotton oligonucleotide microarrays for gene expression analysis.
BMC genomics 2007;8():81.
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2007: Moskal William A; Wu Hank C; Underwood Beverly A; Wang Wei; Town Christopher D; Xiao Yongli
Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome.
BMC genomics 2007;8():18.
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2006: Jakse Jernej; Telgmann Alexa; Jung Christian; Khar Anil; Melgar Sergio; Cheung Foo; Town Christopher D; Havey Michael J
Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;114(1):31-9.
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2006: Cannon Steven B; Sterck Lieven; Rombauts Stephane; Sato Shusei; Cheung Foo; Gouzy Jérôme; Wang Xiaohong; Mudge Joann; Vasdewani Jayprakash; Schiex Thomas; Spannagl Manuel; Monaghan Erin; Nicholson Christine; Humphray Sean J; Schoof Heiko; Mayer Klaus F X; Rogers Jane; Quétier Francis; Oldroyd Giles E; Debellé Frédéric; Cook Douglas R; Retzel Ernest F; Roe Bruce A; Town Christopher D; Tabata Satoshi; Van de Peer Yves; Young Nevin D
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(40):14959-64.
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2006: Samuel Yang S; Cheung Foo; Lee Jinsuk J; Ha Misook; Wei Ning E; Sze Sing-Hoi; Stelly David M; Thaxton Peggy; Triplett Barbara; Town Christopher D; Jeffrey Chen Z
Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.
The Plant journal : for cell and molecular biology 2006;47(5):761-75.
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2006: Thibaud-Nissen Françoise; Wu Hank; Richmond Todd; Redman Julia C; Johnson Christopher; Green Roland; Arias Jonathan; Town Christopher D
Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants.
The Plant journal : for cell and molecular biology 2006;47(1):152-62.
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2006: Town Christopher D; Cheung Foo; Maiti Rama; Crabtree Jonathan; Haas Brian J; Wortman Jennifer R; Hine Erin E; Althoff Ryan; Arbogast Tamara S; Tallon Luke J; Vigouroux Marielle; Trick Martin; Bancroft Ian
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.
The Plant cell 2006;18(6):1348-59.
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2006: Underwood Beverly A; Vanderhaeghen Rudy; Whitford Ryan; Town Christopher D; Hilson Pierre
Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
Plant biotechnology journal 2006;4(3):317-24.
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2006: Town Christopher D
Annotating the genome of Medicago truncatula.
Current opinion in plant biology 2006;9(2):122-7.
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2006: Lohar Dasharath Prasad; Sharopova Natalya; Endre Gabriella; Peñuela Silvia; Samac Deborah; Town Christopher; Silverstein Kevin A T; VandenBosch Kathryn A
Transcript analysis of early nodulation events in Medicago truncatula.
Plant physiology 2006;140(1):221-34.
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2006: Cheung Foo; Haas Brian J; Goldberg Susanne M D; May Gregory D; Xiao Yongli; Town Christopher D
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
BMC genomics 2006;7():272.
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2006: Ruhlman Tracey; Lee Seung-Bum; Jansen Robert K; Hostetler Jessica B; Tallon Luke J; Town Christopher D; Daniell Henry
Complete plastid genome sequence of Daucus carota: implications for biotechnology and phylogeny of angiosperms.
BMC genomics 2006;7():222.
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2006: Lee Seung-Bum; Kaittanis Charalambos; Jansen Robert K; Hostetler Jessica B; Tallon Luke J; Town Christopher D; Daniell Henry
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms.
BMC genomics 2006;7():61.
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2005: Kuhl Joseph C; Havey Michael J; Martin William J; Cheung Foo; Yuan Qiaoping; Landherr Lena; Hu Yi; Leebens-Mack James; Town Christopher D; Sink Kenneth C
Comparative genomic analyses in Asparagus.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2005;48(6):1052-60.
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2005: Xiao Yong-Li; Smith Shannon R; Ishmael Nadeeza; Redman Julia C; Kumar Nihkil; Monaghan Erin L; Ayele Mulu; Haas Brian J; Wu Hank C; Town Christopher D
Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.
Plant physiology 2005;139(3):1323-37.
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2005: Brown Daren W; Cheung Foo; Proctor Robert H; Butchko Robert A E; Zheng Li; Lee Yuandan; Utterback Teresa; Smith Shannon; Feldblyum Tamara; Glenn Anthony E; Plattner Ronald D; Kendra David F; Town Christopher D; Whitelaw Catherine A
Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides.
Fungal genetics and biology : FG & B 2005;42(10):848-61.
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2005: Martin William J; McCallum John; Shigyo Masayoshi; Jakse Jernej; Kuhl Joseph C; Yamane Naoko; Pither-Joyce Meeghan; Gokce Ali Fuat; Sink Kenneth C; Town Christopher D; Havey Michael J
Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity.
Molecular genetics and genomics : MGG 2005;274(3):197-204.
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2005: Cannon Steven B; Crow John A; Heuer Michael L; Wang Xiaohong; Cannon Ethalinda K S; Dwan Christopher; Lamblin Anne-Francoise; Vasdewani Jayprakash; Mudge Joann; Cook Andrew; Gish John; Cheung Foo; Kenton Steve; Kunau Timothy M; Brown Douglas; May Gregory D; Kim Dongjin; Cook Douglas R; Roe Bruce A; Town Chris D; Young Nevin D; Retzel Ernest F
Databases and information integration for the Medicago truncatula genome and transcriptome.
Plant physiology 2005;138(1):38-46.
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2005: Young Nevin D; Cannon Steven B; Sato Shusei; Kim Dongjin; Cook Douglas R; Town Chris D; Roe Bruce A; Tabata Satoshi
Sequencing the genespaces of Medicago truncatula and Lotus japonicus.
Plant physiology 2005;137(4):1174-81.
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2005: Ayele Mulu; Haas Brian J; Kumar Nikhil; Wu Hank; Xiao Yongli; Van Aken Susan; Utterback Teresa R; Wortman Jennifer R; White Owen R; Town Christopher D
Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.
Genome research 2005;15(4):487-95.
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2005: Mudge Joann; Cannon Steven B; Kalo Peter; Oldroyd Giles E D; Roe Bruce A; Town Christopher D; Young Nevin D
Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.
BMC plant biology 2005;5():15.
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2005: Haas Brian J; Wortman Jennifer R; Ronning Catherine M; Hannick Linda I; Smith Roger K; Maiti Rama; Chan Agnes P; Yu Chunhui; Farzad Maryam; Wu Dongying; White Owen; Town Christopher D
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.
BMC biology 2005;3():7.
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2004: Redman Julia C; Haas Brian J; Tanimoto Gene; Town Christopher D
Development and evaluation of an Arabidopsis whole genome Affymetrix probe array.
The Plant journal : for cell and molecular biology 2004;38(3):545-61.
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2004: Kuhl Joseph C; Cheung Foo; Yuan Qiaoping; Martin William; Zewdie Yayeh; McCallum John; Catanach Andrew; Rutherford Paul; Sink Kenneth C; Jenderek Maria; Prince James P; Town Christopher D; Havey Michael J
A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales.
The Plant cell 2004;16(1):114-25.
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2003: Haas Brian J; Delcher Arthur L; Mount Stephen M; Wortman Jennifer R; Smith Roger K; Hannick Linda I; Maiti Rama; Ronning Catherine M; Rusch Douglas B; Town Christopher D; Salzberg Steven L; White Owen
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
Nucleic acids research 2003;31(19):5654-66.
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2003: Liu Jinyuan; Blaylock Laura A; Endre Gabriella; Cho Jennifer; Town Christopher D; VandenBosch Kathryn A; Harrison Maria J
Transcript profiling coupled with spatial expression analyses reveals genes involved in distinct developmental stages of an arbuscular mycorrhizal symbiosis.
The Plant cell 2003;15(9):2106-23.
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2003: Wortman Jennifer R; Haas Brian J; Hannick Linda I; Smith Roger K; Maiti Rama; Ronning Catherine M; Chan Agnes P; Yu Chunhui; Ayele Mulu; Whitelaw Catherine A; White Owen R; Town Christopher D
Annotation of the Arabidopsis genome.
Plant physiology 2003;132(2):461-8.
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2003: Kim Heenam; Snesrud Erik C; Haas Brian; Cheung Foo; Town Christopher D; Quackenbush John
Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray.
Genome research 2003;13(3):327-40.
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2002: Xiao Yong-Li; Malik Mukesh; Whitelaw Catherine A; Town Christopher D
Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
Plant physiology 2002;130(4):2118-28.
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2002: Kim H; Zhao B; Snesrud E C; Haas B J; Town C D; Quackenbush J
Use of RNA and genomic DNA references for inferred comparisons in DNA microarray analyses.
BioTechniques 2002;33(4):924-30.
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2002: Fedorova Maria; van de Mortel Judith; Matsumoto Peter A; Cho Jennifer; Town Christopher D; VandenBosch Kathryn A; Gantt J Stephen; Vance Carroll P
Genome-wide identification of nodule-specific transcripts in the model legume Medicago truncatula.
Plant physiology 2002;130(2):519-37.
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2002: Haas Brian J; Volfovsky Natalia; Town Christopher D; Troukhan Maxim; Alexandrov Nickolai; Feldmann Kenneth A; Flavell Richard B; White Owen; Salzberg Steven L
Full-length messenger RNA sequences greatly improve genome annotation.
Genome biology 2002;3(6):RESEARCH0029.
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2001: Stupar R M; Lilly J W; Town C D; Cheng Z; Kaul S; Buell C R; Jiang J
Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: implication of potential sequencing errors caused by large-unit repeats.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(9):5099-103.
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