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Olga Troyanskaya
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17
Huttenhower, Curtis
15
Myers, Chad
12
Botstein, David
12
Hibbs, Matthew
8
Brown, Patrick
5
Caudy, Amy
4
Altman, Russ
4
Li, Kai
3
van de Rijn, Matt
3
Dunham, Maitreya
2
Dolinski, Kara
2
Dumeaux, Vanessa
2
Coller, Hilary
2
Hastie, Trevor
2
Garber, Mitchell
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Geonetwork of Olga Troyanskaya (preview)
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All Publications
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2009: Huttenhower Curtis; Hibbs Matthew A; Myers Chad L; Caudy Amy A; Hess David C; Troyanskaya Olga G
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.
Bioinformatics (Oxford, England) 2009;25(18):2404-10.
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2009: Chikina Maria D; Huttenhower Curtis; Murphy Coleen T; Troyanskaya Olga G
Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans.
PLoS computational biology 2009;5(6):e1000417.
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2009: Huttenhower Curtis; Haley Erin M; Hibbs Matthew A; Dumeaux Vanessa; Barrett Daniel R; Coller Hilary A; Troyanskaya Olga G
Exploring the human genome with functional maps.
Genome research 2009;19(6):1093-106.
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2009: Barutcuoglu Zafer; Airoldi Edoardo M; Dumeaux Vanessa; Schapire Robert E; Troyanskaya Olga G
Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields.
Bioinformatics (Oxford, England) 2009;25(10):1307-13.
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2009: Hibbs Matthew A; Myers Chad L; Huttenhower Curtis; Hess David C; Li Kai; Caudy Amy A; Troyanskaya Olga G
Directing experimental biology: a case study in mitochondrial biogenesis.
PLoS computational biology 2009;5(3):e1000322.
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2009: Hess David C; Myers Chad L; Huttenhower Curtis; Hibbs Matthew A; Hayes Alicia P; Paw Jadine; Clore John J; Mendoza Rosa M; Luis Bryan San; Nislow Corey; Giaever Guri; Costanzo Michael; Troyanskaya Olga G; Caudy Amy A
Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis.
PLoS genetics 2009;5(3):e1000407.
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2009: Bradley Patrick H; Brauer Matthew J; Rabinowitz Joshua D; Troyanskaya Olga G
Coordinated concentration changes of transcripts and metabolites in Saccharomyces cerevisiae.
PLoS computational biology 2009;5(1):e1000270.
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2009: Airoldi Edoardo M; Huttenhower Curtis; Gresham David; Lu Charles; Caudy Amy A; Dunham Maitreya J; Broach James R; Botstein David; Troyanskaya Olga G
Predicting cellular growth from gene expression signatures.
PLoS computational biology 2009;5(1):e1000257.
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2009: Myers Chad L; Chiriac Camelia; Troyanskaya Olga G
Discovering biological networks from diverse functional genomic data.
Methods in molecular biology (Clifton, N.J.) 2009;563():157-75.
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2009: Huttenhower Curtis; Myers Chad L; Hibbs Matthew A; Troyanskaya Olga G
Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data.
Methods in molecular biology (Clifton, N.J.) 2009;548():273-93.
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2009: Butte Atul J; Sarkar Indra Neil; Ramoni Marco; Lussier Yves; Troyanskaya Olga
Selected proceedings of the First Summit on Translational Bioinformatics 2008.
BMC bioinformatics 2009;10 Suppl 2():I1.
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2008: Huttenhower C; Troyanskaya O G
Assessing the functional structure of genomic data.
Bioinformatics (Oxford, England) 2008;24(13):i330-8.
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2008: Huttenhower Curtis; Schroeder Mark; Chikina Maria D; Troyanskaya Olga G
The Sleipnir library for computational functional genomics.
Bioinformatics (Oxford, England) 2008;24(13):1559-61.
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2008: Brauer Matthew J; Huttenhower Curtis; Airoldi Edoardo M; Rosenstein Rachel; Matese John C; Gresham David; Boer Viktor M; Troyanskaya Olga G; Botstein David
Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast.
Molecular biology of the cell 2008;19(1):352-67.
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2008: Guan Yuanfang; Myers Chad L; Lu Rong; Lemischka Ihor R; Bult Carol J; Troyanskaya Olga G
A genomewide functional network for the laboratory mouse.
PLoS computational biology 2008;4(9):e1000165.
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2008: Guan Yuanfang; Myers Chad L; Hess David C; Barutcuoglu Zafer; Caudy Amy A; Troyanskaya Olga G
Predicting gene function in a hierarchical context with an ensemble of classifiers.
Genome biology 2008;9 Suppl 1():S3.
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2007: Troyanskaya Olga
"Getting started in...": a series not to miss.
PLoS computational biology 2007;3(10):1841.
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2007: Hibbs Matthew A; Hess David C; Myers Chad L; Huttenhower Curtis; Li Kai; Troyanskaya Olga G
Exploring the functional landscape of gene expression: directed search of large microarray compendia.
Bioinformatics (Oxford, England) 2007;23(20):2692-9.
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2007: Myers Chad L; Troyanskaya Olga G
Context-sensitive data integration and prediction of biological networks.
Bioinformatics (Oxford, England) 2007;23(17):2322-30.
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2007: Markowetz Florian; Kostka Dennis; Troyanskaya Olga G; Spang Rainer
Nested effects models for high-dimensional phenotyping screens.
Bioinformatics (Oxford, England) 2007;23(13):i305-12.
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2007: Markowetz Florian; Troyanskaya Olga G
Computational identification of cellular networks and pathways.
Molecular bioSystems 2007;3(7):478-82.
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2007: Chi An; Huttenhower Curtis; Geer Lewis Y; Coon Joshua J; Syka John E P; Bai Dina L; Shabanowitz Jeffrey; Burke Daniel J; Troyanskaya Olga G; Hunt Donald F
Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(7):2193-8.
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2007: Guan Yuanfang; Dunham Maitreya J; Troyanskaya Olga G
Functional analysis of gene duplications in Saccharomyces cerevisiae.
Genetics 2007;175(2):933-43.
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2007: Haarer Brian; Viggiano Susan; Hibbs Mathew A; Troyanskaya Olga G; Amberg David C
Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies.
Genes & development 2007;21(2):148-59.
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2007: Troyanskaya Olga G
Integrated analysis of microarray results.
Methods in molecular biology (Clifton, N.J.) 2007;382():429-37.
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2007: Huttenhower Curtis; Flamholz Avi I; Landis Jessica N; Sahi Sauhard; Myers Chad L; Olszewski Kellen L; Hibbs Matthew A; Siemers Nathan O; Troyanskaya Olga G; Coller Hilary A
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods.
BMC bioinformatics 2007;8():250.
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2006: Huttenhower Curtis; Hibbs Matt; Myers Chad; Troyanskaya Olga G
A scalable method for integration and functional analysis of multiple microarray datasets.
Bioinformatics (Oxford, England) 2006;22(23):2890-7.
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2006: Barutcuoglu Zafer; Schapire Robert E; Troyanskaya Olga G
Hierarchical multi-label prediction of gene function.
Bioinformatics (Oxford, England) 2006;22(7):830-6.
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2006: Huttenhower Curtis; Troyanskaya Olga G
Bayesian data integration: a functional perspective.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2006;():341-51.
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2006: Sealfon Rachel S G; Hibbs Matthew A; Huttenhower Curtis; Myers Chad L; Troyanskaya Olga G
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.
BMC bioinformatics 2006;7():443.
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2006: Myers Chad L; Barrett Daniel R; Hibbs Matthew A; Huttenhower Curtis; Troyanskaya Olga G
Finding function: evaluation methods for functional genomic data.
BMC genomics 2006;7():187.
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2006: Brown James A; Sherlock Gavin; Myers Chad L; Burrows Nicola M; Deng Changchun; Wu H Irene; McCann Kelly E; Troyanskaya Olga G; Brown J Martin
Global analysis of gene function in yeast by quantitative phenotypic profiling.
Molecular systems biology 2006;2():2006.0001.
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2005: Wallace Grant; Anshus Otto J; Bi Peng; Chen Han; Chen Yuqun; Clark Douglas; Cook Perry; Finkelstein Adam; Funkhouser Thomas; Gupta Anoop; Hibbs Matthew; Li Kai; Liu Zhiyan; Samanta Rudrajit; Sukthankar Rahul; Troyanskaya Olga
Tools and applications for large-scale display walls.
IEEE computer graphics and applications 2005;25(4):24-33.
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2005: Troyanskaya Olga G
Putting microarrays in a context: integrated analysis of diverse biological data.
Briefings in bioinformatics 2005;6(1):34-43.
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2005: Myers Chad L; Robson Drew; Wible Adam; Hibbs Matthew A; Chiriac Camelia; Theesfeld Chandra L; Dolinski Kara; Troyanskaya Olga G
Discovery of biological networks from diverse functional genomic data.
Genome biology 2005;6(13):R114.
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2005: Troyanskaya Olga G
Putting the 'bio' into bioinformatics.
Genome biology 2005;6(10):351.
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2005: Myers Chad L; Chen Xing; Troyanskaya Olga G
Visualization-based discovery and analysis of genomic aberrations in microarray data.
BMC bioinformatics 2005;6():146.
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2005: Hibbs Matthew A; Dirksen Nathaniel C; Li Kai; Troyanskaya Olga G
Visualization methods for statistical analysis of microarray clusters.
BMC bioinformatics 2005;6():115.
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2004: Myers Chad L; Dunham Maitreya J; Kung S Y; Troyanskaya Olga G
Accurate detection of aneuploidies in array CGH and gene expression microarray data.
Bioinformatics (Oxford, England) 2004;20(18):3533-43.
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2003: Schaner Marci E; Ross Douglas T; Ciaravino Giuseppe; Sorlie Therese; Troyanskaya Olga; Diehn Maximilian; Wang Yan C; Duran George E; Sikic Thomas L; Caldeira Sandra; Skomedal Hanne; Tu I-Ping; Hernandez-Boussard Tina; Johnson Steven W; O'Dwyer Peter J; Fero Michael J; Kristensen Gunnar B; Borresen-Dale Anne-Lise; Hastie Trevor; Tibshirani Robert; van de Rijn Matt; Teng Nelson N; Longacre Teri A; Botstein David; Brown Patrick O; Sikic Branimir I
Gene expression patterns in ovarian carcinomas.
Molecular biology of the cell 2003;14(11):4376-86.
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2003: Whitfield Michael L; Finlay Deborah R; Murray John Isaac; Troyanskaya Olga G; Chi Jen-Tsan; Pergamenschikov Alexander; McCalmont Timothy H; Brown Patrick O; Botstein David; Connolly M Kari
Systemic and cell type-specific gene expression patterns in scleroderma skin.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(21):12319-24.
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2003: Chi Jen-Tsan; Chang Howard Y; Haraldsen Guttorm; Jahnsen Frode L; Troyanskaya Olga G; Chang Dustin S; Wang Zhen; Rockson Stanley G; van de Rijn Matt; Botstein David; Brown Patrick O
Endothelial cell diversity revealed by global expression profiling.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(19):10623-8.
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2003: Chen Xin; Leung Suet Y; Yuen Siu T; Chu Kent-Man; Ji Jiafu; Li Rui; Chan Annie S Y; Law Simon; Troyanskaya Olga G; Wong John; So Samuel; Botstein David; Brown Patrick O
Variation in gene expression patterns in human gastric cancers.
Molecular biology of the cell 2003;14(8):3208-15.
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2003: Troyanskaya Olga G; Dolinski Kara; Owen Art B; Altman Russ B; Botstein David
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8348-53.
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2003: Bohen Sean P; Troyanskaya Olga G; Alter Orly; Warnke Roger; Botstein David; Brown Patrick O; Levy Ronald
Variation in gene expression patterns in follicular lymphoma and the response to rituximab.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(4):1926-30.
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2002: Leung Suet Y; Chen Xin; Chu Kent M; Yuen Siu T; Mathy Jonathan; Ji Jiafu; Chan Annie S Y; Li Rui; Law Simon; Troyanskaya Olga G; Tu I-Ping; Wong John; So Samuel; Botstein David; Brown Patrick O
Phospholipase A2 group IIA expression in gastric adenocarcinoma is associated with prolonged survival and less frequent metastasis.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(25):16203-8.
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2002: Troyanskaya Olga G; Garber Mitchell E; Brown Patrick O; Botstein David; Altman Russ B
Nonparametric methods for identifying differentially expressed genes in microarray data.
Bioinformatics (Oxford, England) 2002;18(11):1454-61.
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2002: Troyanskaya Olga G; Arbell Ora; Koren Yair; Landau Gad M; Bolshoy Alexander
Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity.
Bioinformatics (Oxford, England) 2002;18(5):679-88.
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2001: Garber M E; Troyanskaya O G; Schluens K; Petersen S; Thaesler Z; Pacyna-Gengelbach M; van de Rijn M; Rosen G D; Perou C M; Whyte R I; Altman R B; Brown P O; Botstein D; Petersen I
Diversity of gene expression in adenocarcinoma of the lung.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(24):13784-9.
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2001: Troyanskaya O; Cantor M; Sherlock G; Brown P; Hastie T; Tibshirani R; Botstein D; Altman R B
Missing value estimation methods for DNA microarrays.
Bioinformatics (Oxford, England) 2001;17(6):520-5.
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