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Simon Twigger

Research Profile

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Rats
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Radiation Hybrid Mapping

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Publications

TOP 3
Victoria Petri; Mary Shimoyama; G Thomas Hayman; Jennifer R Smith; Marek Tutaj; Jeff de Pons; Melinda R Dwinell; Diane H Munzenmaier; Simon N Twigger; Howard J Jacob
The Rat Genome Database pathway portal.
Stanley J F Laulederkind; Mary Shimoyama; G Thomas Hayman; Timothy F Lowry; Rajni Nigam; Victoria Petri; Jennifer R Smith; Shur-Jen Wang; Jeff de Pons; George Kowalski; Weisong Liu; Wes Rood; Diane H Munzenmaier; Melinda R Dwinell; Simon N Twigger; Howard J Jacob
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Mary Shimoyama; G Thomas Hayman; Stanley J F Laulederkind; Rajni Nigam; Timothy F Lowry; Victoria Petri; Jennifer R Smith; Shur-Jen Wang; Diane H Munzenmaier; Melinda R Dwinell; Simon N Twigger; Howard J Jacob
The rat genome database curators: who, what, where, why.

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All Publications

2011: Victoria Petri; Mary Shimoyama; G Thomas Hayman; Jennifer R Smith; Marek Tutaj; Jeff de Pons; Melinda R Dwinell; Diane H Munzenmaier; Simon N Twigger; Howard J Jacob
The Rat Genome Database pathway portal.
Database : the journal of biological databases and curation 2011;2011():bar010.
2011: Stanley J F Laulederkind; Mary Shimoyama; G Thomas Hayman; Timothy F Lowry; Rajni Nigam; Victoria Petri; Jennifer R Smith; Shur-Jen Wang; Jeff de Pons; George Kowalski; Weisong Liu; Wes Rood; Diane H Munzenmaier; Melinda R Dwinell; Simon N Twigger; Howard J Jacob
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Database : the journal of biological databases and curation 2011;2011():bar002.
2009: Mary Shimoyama; G Thomas Hayman; Stanley J F Laulederkind; Rajni Nigam; Timothy F Lowry; Victoria Petri; Jennifer R Smith; Shur-Jen Wang; Diane H Munzenmaier; Melinda R Dwinell; Simon N Twigger; Howard J Jacob
The rat genome database curators: who, what, where, why.
PLoS computational biology 2009;5(11):e1000582.
2009: Brian Halligan; Joey F Geiger; Andrew K Vallejos; Andrew S Greene; Simon N Twigger
Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms.
Journal of proteome research 2009;8(6):3148-53.
2008: Simon N Twigger; Kim D Pruitt; Xosé M Fernández-Suárez; Donna Karolchik; Kim C Worley; Donna R Maglott; Garth Brown; George Weinstock; Richard A Gibbs; Jim Kent; Ewan Birney; Howard J Jacob
What everybody should know about the rat genome and its online resources.
Nature genetics 2008;40(5):523-7.
2007: George N Phillips; Brian G Fox; John Lute Markley; Brian F Volkman; Euiyoung Bae; Eduard Bitto; Craig A Bingman; Ronnie O Frederick; Jason G McCoy; Betsy L Lytle; Brad S Pierce; Jikui Song; Simon N Twigger
Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics.
Journal of structural and functional genomics 2007;8(2-3):73-84.
2007: Simon N Twigger; Mary Shimoyama; Susan Bromberg; Anne E Kwitek; Howard J Jacob
The Rat Genome Database, update 2007--easing the path from disease to data and back again.
Nucleic acids research 2007;35(Database issue):D658-62.
2006: Simon N Twigger; Jennifer S Smith; Angela Zuniga-Meyer; Susan K Bromberg
Exploring phenotypic data at the rat genome database.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2006;Chapter 1():Unit 1.14.
2005: David Weinshenker; Malania M Wilson; Katherine M Williams; Jay M Weiss; Neil E Lamb; Simon N Twigger
A new method for identifying informative genetic markers in selectively bred rats.
Mammalian genome : official journal of the International Mammalian Genome Society 2005;16(10):784-91.
2005: Brian Halligan; Victor Ruotti; Simon N Twigger; Andrew S Greene
DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
Nucleic acids research 2005;33(Web Server issue):W376-81.
2005: Wayne A Hicks; Brian Halligan; Ronit Y Slyper; Simon N Twigger; Andrew S Greene; Michael Olivier
Simultaneous quantification and identification using 18O labeling with an ion trap mass spectrometer and the analysis software application "ZoomQuant".
Journal of the American Society for Mass Spectrometry 2005;16(6):916-25.
2005: Brian Halligan; Ronit Y Slyper; Simon N Twigger; Wayne Hicks; Michael Olivier; Andrew S Greene
ZoomQuant: an application for the quantitation of stable isotope labeled peptides.
Journal of the American Society for Mass Spectrometry 2005;16(3):302-6.
2005: Norberto De La Cruz; Susan Bromberg; Dean Pasko; Mary Shimoyama; Simon N Twigger; Jiali Chen; Chin-Fu Chen; Chunyu Fan; Cindy Foote; Gopal R Gopinath; Glenn Harris; Aubrey Hughes; Yuan Ji; Weihong Jin; Dawei Li; Jedidiah Mathis; Natalya Nenasheva; Jeff Nie; Rajni Nigam; Victoria Petri; Dorothy Reilly; Weiye Wang; Wenhua Wu; Angela Zuniga-Meyer; Lan Zhao; Anne E Kwitek; Peter Tonellato; Howard Jacob
The Rat Genome Database (RGD): developments towards a phenome database.
Nucleic acids research 2005;33(Database issue):D485-91.
2004: Brian Halligan; Edward A Dratz; Xin Feng; Simon N Twigger; Peter Tonellato; Andrew S Greene
Peptide identification using peptide amino acid attribute vectors.
Journal of proteome research 2004;3(4):813-20.
2004: Brian Halligan; Victor Ruotti; Weihong Jin; Scott Laffoon; Simon N Twigger; Edward A Dratz
ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels.
Nucleic acids research 2004;32(Web Server issue):W638-44.
2004: Ann Etim; Guohui Zhou; Xinyu Wen; Hang Liu; Victor Ruotti; Simon N Twigger; Weihong Jin; Brian Matysiak; Jedidiah Mathis; Peter Tonellato; Milton W Datta
ChromSorter PC: a database of chromosomal regions associated with human prostate cancer.
BMC genomics 2004;5(1):27.
2004: Simon N Twigger; Jeff Nie; Victor Ruotti; Jiaming Yu; Dan Chen; Dawei Li; Jedidiah Mathis; Vijay Narayanasamy; Gopal R Gopinath; Dean Pasko; Mary Shimoyama; Norberto De La Cruz; Susan Bromberg; Anne E Kwitek; Howard J Jacob; Peter Tonellato
Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.
Genome research 2004;14(4):651-60.
2004: Simon N Twigger
Of rats and men.
Genome biology 2004;5(3):314.
2003: Michael A Thomas; Chin-Fu Chen; Michael I Jensen-Seaman; Peter Tonellato; Simon N Twigger
Phylogenetics of rat inbred strains.
Mammalian genome : official journal of the International Mammalian Genome Society 2003;14(1):61-4.
2002: Simon N Twigger; Jian Lu; Mary Shimoyama; Dan Chen; Dean Pasko; Hanping Long; Jessica Ginster; Chin-Fu Chen; Rajni Nigam; Anne E Kwitek; Janan Eppig; Lois Maltais; Donna R Maglott; Greg Schuler; Howard Jacob; Peter Tonellato
Rat Genome Database (RGD): mapping disease onto the genome.
Nucleic acids research 2002;30(1):125-8.
2001: Anne E Kwitek; Peter Tonellato; Dan Chen; Jo Gullings-Handley; Y S Cheng; Simon N Twigger; Todd E Scheetz; Thomas L Casavant; M Stoll; Marcelo A Nobrega; Masahide Shiozawa; M Bento Soares; Val C Sheffield; Howard J Jacob
Automated construction of high-density comparative maps between rat, human, and mouse.
Genome research 2001;11(11):1935-43.
2000: Claudia Gösele; L Hong; Thomas Kreitler; M Rossmann; B Hieke; U Gross; M Kramer; Heinz Himmelbauer; M T Bihoreau; AE Kwitek-Black; Simon N Twigger; Peter Tonellato; H J Jacob; Leonard C Schalkwyk; Klaus Lindpaintner; Detlev Ganten; Hans Lehrach; Margit Knoblauch
High-throughput scanning of the rat genome using interspersed repetitive sequence-PCR markers.
Genomics 2000;69(3):287-94.
1999: RG Steen; AE Kwitek-Black; C Glenn; Jo Gullings-Handley; WJ Van Etten; O S Atkinson; D Appel; Simon N Twigger; M Muir; T Mull; M Granados; M Kissebah; K Russo; R Crane; M Popp; M Peden; T Matise; D M Brown; J Lu; Stephen Kingsmore; Peter Tonellato; Steve Rozen; DK Slonim; P Young; Howard J Jacob
A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat.
Genome research 1999;9(6):AP1-8, insert.