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Catherine Ucla

Research Profile

Physiology

Transcription, Genetic

Concepts & Ideas

Molecular Sequence Data

Anatomy

Genes & Molecular Sequences

Chemicals & Drugs

Occupations

Genomics

Procedures

Living Beings

Mouse

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Publications

TOP 3
Sergey I Nikolaev; Samuel Deutsch; Raphael Genolet; Christelle Borel; Leila Parand; Catherine Ucla; Frederic Schütz; Genevieve Duriaux Sail; Yann Dupré; Pascale Jaquier-Gubler; Tanguy Araud; Béatrice Conne; Patrick Descombes; Jean-Dominique Vassalli; Joseph Curran; Stylianos E Antonarakis
Transcriptional and post-transcriptional profile of human chromosome 21.
Barbara D'haene; Catia Attanasio; Diane Beysen; Josée Dostie; Edmond Lemire; Philippe Bouchard; Michael Field; Kristie Jones; Birgit Lorenz; Björn Menten; Karen Buysse; Filip Pattyn; Marc Friedli; Catherine Ucla; Colette Rossier; Carine Wyss; Frank Speleman; Anne De Paepe; Job Dekker; Stylianos E Antonarakis; Elfride De Baere
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening.
Sarah Djebali; Philipp Kapranov; Sylvain Foissac; Julien Lagarde; Alexandre Reymond; Catherine Ucla; Carine Wyss; Jorg Drenkow; Erica Dumais; Ryan R Murray; Chenwei Lin; David Szeto; France Denoeud; Miquel Calvo; Adam Frankish; Jennifer Harrow; Periklis Makrythanasis; Marc Vidal; Kourosh Salehi-Ashtiani; Stylianos E Antonarakis; Thomas Gingeras; Roderic Guigó
Efficient targeted transcript discovery via array-based normalization of RACE libraries.

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All Publications

2009: Sergey I Nikolaev; Samuel Deutsch; Raphael Genolet; Christelle Borel; Leila Parand; Catherine Ucla; Frederic Schütz; Genevieve Duriaux Sail; Yann Dupré; Pascale Jaquier-Gubler; Tanguy Araud; Béatrice Conne; Patrick Descombes; Jean-Dominique Vassalli; Joseph Curran; Stylianos E Antonarakis
Transcriptional and post-transcriptional profile of human chromosome 21.
Genome research 2009;19(8):1471-9.
2009: Barbara D'haene; Catia Attanasio; Diane Beysen; Josée Dostie; Edmond Lemire; Philippe Bouchard; Michael Field; Kristie Jones; Birgit Lorenz; Björn Menten; Karen Buysse; Filip Pattyn; Marc Friedli; Catherine Ucla; Colette Rossier; Carine Wyss; Frank Speleman; Anne De Paepe; Job Dekker; Stylianos E Antonarakis; Elfride De Baere
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening.
PLoS genetics 2009;5(6):e1000522.
2008: Sarah Djebali; Philipp Kapranov; Sylvain Foissac; Julien Lagarde; Alexandre Reymond; Catherine Ucla; Carine Wyss; Jorg Drenkow; Erica Dumais; Ryan R Murray; Chenwei Lin; David Szeto; France Denoeud; Miquel Calvo; Adam Frankish; Jennifer Harrow; Periklis Makrythanasis; Marc Vidal; Kourosh Salehi-Ashtiani; Stylianos E Antonarakis; Thomas Gingeras; Roderic Guigó
Efficient targeted transcript discovery via array-based normalization of RACE libraries.
Nature methods 2008;5(7):629-35.
2007: Robert Lyle; Paola Prandini; Kazutoyo Osoegawa; Boudewijn ten Hallers; Sean Humphray; Baoli Zhu; Eduardo Eyras; Robert Castelo; Christine P Bird; Sarantis Gagos; Carol Scott; Antony Cox; Samuel Deutsch; Catherine Ucla; Marc Cruts; Sophie Dahoun; Xinwei She; Frederique Bena; Sheng-Yue Wang; Christine Van Broeckhoven; Evan E Eichler; Roderic Guigo; Jane Rogers; Pieter J de Jong; Alexandre Reymond; Stylianos E Antonarakis
Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21.
Genome research 2007;17(11):1690-6.
2007: Stefan Washietl; Jakob S Pedersen; Jan O Korbel; Claudia Stocsits; Andreas R Gruber; Jorg Hackermuller; Jana Hertel; Manja Lindemeyer; Kristin Reiche; Andrea Tanzer; Catherine Ucla; Carine Wyss; Stylianos E Antonarakis; France Denoeud; Julien Lagarde; Jorg Drenkow; Philipp Kapranov; Thomas Gingeras; Roderic Guigó; Michael Snyder; Mark Gerstein; Alexandre Reymond; Ivo L Hofacker; Peter F Stadler
Structured RNAs in the ENCODE selected regions of the human genome.
Genome research 2007;17(6):852-64.
2007: France Denoeud; Philipp Kapranov; Catherine Ucla; Adam Frankish; Robert Castelo; Jorg Drenkow; Julien Lagarde; Tyler Alioto; Caroline Manzano; Jacqueline Chrast; Sujit Dike; Carine Wyss; Charlotte N Henrichsen; Nancy Holroyd; Mark C Dickson; Ruth Taylor; Zahra Hance; Sylvain Foissac; Richard Myers; Jane Rogers; Tim Hubbard; Jennifer Harrow; Roderic Guigó; Thomas Gingeras; Stylianos E Antonarakis; Alexandre Reymond
Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions.
Genome research 2007;17(6):746-59.
2006: Jennifer Harrow; France Denoeud; Adam Frankish; Alexandre Reymond; Chao-Kung Chen; Jacqueline Chrast; Julien Lagarde; James G R Gilbert; Roy Storey; David Swarbreck; Colette Rossier; Catherine Ucla; Tim Hubbard; Stylianos E Antonarakis; Roderic Guigo
GENCODE: producing a reference annotation for ENCODE.
Genome biology 2006;7 Suppl 1():S4.1-9.
2006: Roderic Guigó; Paul Flicek; Josep F Abril; Alexandre Reymond; Julien Lagarde; France Denoeud; Stylianos E Antonarakis; Michael Ashburner; Vladimir Bajic; Ewan Birney; Robert Castelo; Eduardo Eyras; Catherine Ucla; Thomas Gingeras; Jennifer Harrow; Tim Hubbard; Suzanna E Lewis; Martin G Reese
EGASP: the human ENCODE Genome Annotation Assessment Project.
Genome biology 2006;7 Suppl 1():S2.1-31.
2005: Luisa Bonafé; Emmanouil T Dermitzakis; Sheila Unger; Cheryl R Greenberg; Belinda A Campos-Xavier; Andreas Zankl; Catherine Ucla; Stylianos E Antonarakis; andrea superti-furga; Alexandre Reymond
Evolutionary comparison provides evidence for pathogenicity of RMRP mutations.
PLoS genetics 2005;1(4):e47.
2003: Emmanouil T Dermitzakis; Alexandre Reymond; Nathalie Scamuffa; Catherine Ucla; Ewen F Kirkness; Colette Rossier; Stylianos E Antonarakis
Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs).
Science (New York, N.Y.) 2003;302(5647):1033-5.
2003: Roderic Guigo; Emmanouil T Dermitzakis; Pankaj Agarwal; Chris P Ponting; Genís Parra; Alexandre Reymond; Josep F Abril; Evan Keibler; Robert Lyle; Catherine Ucla; Stylianos E Antonarakis; Michael R Brent
Comparison of mouse and human genomes followed by experimental verification yields an estimated 1,019 additional genes.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(3):1140-5.
2002: Alexandre Reymond; Valeria Marigo; Murat B Yaylaoglu; Antonio Leoni; Catherine Ucla; Nathalie Scamuffa; Cristina Caccioppoli; Emmanouil T Dermitzakis; Robert Lyle; Sandro Banfi; Gregor Eichele; Stylianos E Antonarakis; Andrea Ballabio
Human chromosome 21 gene expression atlas in the mouse.
Nature 2002;420(6915):582-6.
2002: Emmanouil T Dermitzakis; Alexandre Reymond; Robert Lyle; Nathalie Scamuffa; Catherine Ucla; Samuel Deutsch; Brian J Stevenson; Volker Flegel; Philipp Bucher; Victor Jongeneel; Stylianos E Antonarakis
Numerous potentially functional but non-genic conserved sequences on human chromosome 21.
Nature 2002;420(6915):578-82.
2002: Alexandre Reymond; Anamaria A Camargo; Samuel Deutsch; Brian J Stevenson; Raphael B Parmigiani; Catherine Ucla; Fabiana Bettoni; Colette Rossier; Robert Lyle; Michel Guipponi; Sandro de Souza; Christian Iseli; Victor Jongeneel; Philipp Bucher; Andrew J G Simpson; Stylianos E Antonarakis
Nineteen additional unpredicted transcripts from human chromosome 21.
Genomics 2002;79(6):824-32.
2002: Giuseppe Merla; Catherine Ucla; Michel Guipponi; Alexandre Reymond
Identification of additional transcripts in the Williams-Beuren syndrome critical region.
Human genetics 2002;110(5):429-38.
2001: Alexandre Reymond; Marc Friedli; Charlotte N Henrichsen; F Chapot; Samuel Deutsch; Catherine Ucla; Colette Rossier; Robert Lyle; Michel Guipponi; Stylianos E Antonarakis
From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map.
Genomics 2001;78(1-2):46-54.
2001: Y Stauffer; Samuel Marguerat; F Meylan; Catherine Ucla; Natalie A. Sutkowski; B Huber; Thierry Pelet; Bernard Conrad
Interferon-alpha-induced endogenous superantigen. a model linking environment and autoimmunity.
Immunity 2001;15(4):591-601.
1997: Séverine Bontron; Catherine Ucla; Bernard Mach; Viktor Steimle
Efficient repression of endogenous major histocompatibility complex class II expression through dominant negative CIITA mutants isolated by a functional selection strategy.
Molecular and cellular biology 1997;17(8):4249-58.
1997: Séverine Bontron; Viktor Steimle; Catherine Ucla; M M Eibl; Bernard Mach
Two novel mutations in the MHC class II transactivator CIITA in a second patient from MHC class II deficiency complementation group A.
Human genetics 1997;99(4):541-6.
1996: J Doyle; S Hoffman; Catherine Ucla; Walter Reith; Bernard Mach; Lisa Stubbs
Locations of human and mouse genes encoding the RFX1 and RFX2 transcription factor proteins.
Genomics 1996;35(1):227-30.
1994: Walter Reith; Catherine Ucla; Emmanuèle Barras; A Gaud; B Durand; C Herrero-Sanchez; M Kobr; Bernard Mach
RFX1, a transactivator of hepatitis B virus enhancer I, belongs to a novel family of homodimeric and heterodimeric DNA-binding proteins.
Molecular and cellular biology 1994;14(2):1230-44.
1994: I Kern; Catherine Ucla; Bernard Mach
Dinucleotide repeat polymorphism in the human RFX1 gene.
Human molecular genetics 1994;3(1):216.
1993: D Scherly; Thierry Nouspikel; J Corlet; Catherine Ucla; Amos Bairoch; Stuart G Clarkson
Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2.
Nature 1993;363(6425):182-5.
1992: L Pugliatti; J Derré; R Berger; Catherine Ucla; Walter Reith; Bernard Mach
The genes for MHC class II regulatory factors RFX1 and RFX2 are located on the short arm of chromosome 19.
Genomics 1992;13(4):1307-10.
1990: Catherine Ucla; P Roux-Lombard; S Fey; Jean-Michel Dayer; Bernard Mach
Interferon gamma drastically modifies the regulation of interleukin 1 genes by endotoxin in U937 cells.
The Journal of clinical investigation 1990;85(1):185-91.
1989: Patrick B Iynedjian; P R Pilot; Thierry Nouspikel; J L Milburn; C Quaade; S Hughes; Catherine Ucla; Christopher B Newgard
Differential expression and regulation of the glucokinase gene in liver and islets of Langerhans.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(20):7838-42.
1989: J Gorski; C Irle; Eric Mickelson; M J Sheehy; A Termijtelen; Catherine Ucla; Bernard Mach
Correlation of structure with T cell responses of the three members of the HLA-DRw52 allelic series.
The Journal of experimental medicine 1989;170(3):1027-32.
1987: Catherine Ucla; Jon van Rood; J Gorski; Bernard Mach
Analysis of HLA-D micropolymorphism by a simple procedure: RNA oligonucleotide hybridization.
The Journal of clinical investigation 1987;80(4):1155-9.
1987: Patrick B Iynedjian; Catherine Ucla; Bernard Mach
Molecular cloning of glucokinase cDNA. Developmental and dietary regulation of glucokinase mRNA in rat liver.
The Journal of biological chemistry 1987;262(13):6032-8.