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Nikolai Ulyanov

Research Profile

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Chemicals & Drugs

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Nuclear Magnetic Resonance, Biomolecular

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Thermodynamics

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Publications

TOP 3
Janet Chung; Nikolai B Ulyanov; Christophe Guilbert; Anwer Mujeeb; Thomas L James
Binding characteristics of small molecules that mimic nucleocapsid protein-induced maturation of stem-loop 1 of HIV-1 RNA.
Irene Gómez Pinto; Christophe Guilbert; Nikolai B Ulyanov; Jay Stearns; Thomas L James
Discovery of ligands for a novel target, the human telomerase RNA, based on flexible-target virtual screening and NMR.
Kinneret Shefer; Yogev Brown; Valentin Gorkovoy; Tamar Nussbaum; Nikolai B Ulyanov; Yehuda Tzfati
A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.

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All Publications

2010: Janet Chung; Nikolai B Ulyanov; Christophe Guilbert; Anwer Mujeeb; Thomas L James
Binding characteristics of small molecules that mimic nucleocapsid protein-induced maturation of stem-loop 1 of HIV-1 RNA.
Biochemistry 2010;49(30):6341-51.
2008: Irene Gómez Pinto; Christophe Guilbert; Nikolai B Ulyanov; Jay Stearns; Thomas L James
Discovery of ligands for a novel target, the human telomerase RNA, based on flexible-target virtual screening and NMR.
Journal of medicinal chemistry 2008;51(22):7205-15.
2007: Kinneret Shefer; Yogev Brown; Valentin Gorkovoy; Tamar Nussbaum; Nikolai B Ulyanov; Yehuda Tzfati
A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.
Molecular and cellular biology 2007;27(6):2130-43.
2007: Nikolai B Ulyanov; Kinneret Shefer; Tom L James; Yehuda Tzfati
Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates.
Nucleic acids research 2007;35(18):6150-60.
2007: Anwer Mujeeb; Nikolai B Ulyanov; Stefanos Georgantis; Ivan Smirnov; Janet Chung; Tristam PARSLOW; Tom L James
Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding.
Nucleic acids research 2007;35(6):2026-34.
2006: Nikolai B Ulyanov; Anwer Mujeeb; Zhihua Du; Marco Tonelli; Tristam PARSLOW; Tom L James
NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site.
The Journal of biological chemistry 2006;281(23):16168-77.
2004: Zhihua Du; Jinghua Yu; Nikolai B Ulyanov; Raul Andino; Tom L James
Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses.
Biochemistry 2004;43(38):11959-72.
2004: Zhihua Du; Nikolai B Ulyanov; Jinghua Yu; Raul Andino; Tom L James
NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA.
Biochemistry 2004;43(19):5757-71.
2003: Marco Tonelli; Nikolai B Ulyanov; Todd M Billeci; Boleslaw Karwowski; Piotr Guga; Wojciech J Stec; Tom L James
Dynamic NMR structures of [Rp]- and [Sp]-phosphorothioated DNA-RNA hybrids: is flexibility required for RNase H recognition?
Biophysical journal 2003;85(4):2525-38.
2002: Luis R Comolli; Nikolai B Ulyanov; Ana Maria Soto; Luis A Marky; Tom L James; William H Gmeiner
NMR structure of the 3' stem-loop from human U4 snRNA.
Nucleic acids research 2002;30(20):4371-9.
2002: Nikolai B Ulyanov; William R Bauer; Tom L James
High-resolution NMR structure of an AT-rich DNA sequence.
Journal of biomolecular NMR 2002;22(3):265-80.
2001: C Kojima; Nikolai B Ulyanov; M Kainosho; Tom L James
Slow motion in the CAA*TTG sequence of a DNA decamer duplex studied by NMR.
Biochemistry 2001;40(24):7239-46.
2000: James M Aramini; Anwer Mujeeb; Nikolai B Ulyanov; Markus Germann
Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints.
Journal of biomolecular NMR 2000;18(4):287-302.
2000: A Görler; Nikolai B Ulyanov; Tom L James
Determination of the populations and structures of multiple conformers in an ensemble from NMR data: multiple-copy refinement of nucleic acid structures using floating weights.
Journal of biomolecular NMR 2000;16(2):147-64.
1999: H Liu; Shauna Farr-Jones; Nikolai B Ulyanov; M Llinas; Susan Marqusee; Darlene Groth; Fred Cohen; Stanley B Prusiner; Tom L James
Solution structure of Syrian hamster prion protein rPrP(90-231).
Biochemistry 1999;38(17):5362-77.
1999: VI Ivanov; S A Bondarenko; E M Zdobnov; AD Beniaminov; EE Minyat; Nikolai B Ulyanov
A pseudoknot-compatible universal site is located in the large ribosomal RNA in the peptidyltransferase center.
FEBS letters 1999;446(1):60-4.
1998: U Schmitz; A Donati; Tom L James; Nikolai B Ulyanov; L Yao
Small structural ensembles for a 17-nucleotide mimic of the tRNA T psi C-loop via fitting dipolar relaxation rates with the quadratic programming algorithm.
Biopolymers 1998;46(5):329-42.
1998: Nikolai B Ulyanov; VI Ivanov; EE Minyat; E B Khomyakova; M V Petrova; K Lesiak; Tom L James
A pseudosquare knot structure of DNA in solution.
Biochemistry 1998;37(37):12715-26.
1997: Tom L James; H Liu; Nikolai B Ulyanov; Shauna Farr-Jones; Hui Zhang; DG Donne; Kiyotoshi Kaneko; Darlene Groth; IR Mehlhorn; Stanley B Prusiner; Fred Cohen
Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(19):10086-91.
1995: H Liu; H P Spielmann; Nikolai B Ulyanov; David E Wemmer; Tom L James
Interproton distance bounds from 2D NOE intensities: effect of experimental noise and peak integration errors.
Journal of biomolecular NMR 1995;6(4):390-402.
1995: Nikolai B Ulyanov; Tom L James
Statistical analysis of DNA duplex structural features.
Methods in enzymology 1995;261():90-120.
1995: Nikolai B Ulyanov; U Schmitz; A Kumar; Tom L James
Probability assessment of conformational ensembles: sugar repuckering in a DNA duplex in solution.
Biophysical journal 1995;68(1):13-24.
1994: Nikolai B Ulyanov; K D Bishop; VI Ivanov; Tom L James
Tertiary base pair interactions in slipped loop-DNA: an NMR and model building study.
Nucleic acids research 1994;22(20):4242-9.
1993: U Schmitz; Nikolai B Ulyanov; A Kumar; Tom L James
Molecular dynamics with weighted time-averaged restraints for a DNA octamer. Dynamic interpretation of nuclear magnetic resonance data.
Journal of molecular biology 1993;234(2):373-89.
1993: Nikolai B Ulyanov; U Schmitz; Tom L James
Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure.
Journal of biomolecular NMR 1993;3(5):547-68.