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Herbert van Amerongen

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TOP 3
Lijin Tian; Shazia Farooq; Herbert van Amerongen
Probing the picosecond kinetics of the photosystem II core complex in vivo.
Emilie Wientjes; Herbert van Amerongen; Roberta Croce
LHCII is an antenna of both photosystems after long-term acclimation.
V U Chukhutsina; C Büchel; Herbert van Amerongen
Variations in the first steps of photosynthesis for the diatom Cyclotella meneghiniana grown under different light conditions.

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All Publications

2013: Lijin Tian; Shazia Farooq; Herbert van Amerongen
Probing the picosecond kinetics of the photosystem II core complex in vivo.
Physical chemistry chemical physics : PCCP 2013;15(9):3146-54.
2013: Emilie Wientjes; Herbert van Amerongen; Roberta Croce
LHCII is an antenna of both photosystems after long-term acclimation.
Biochimica et biophysica acta 2013;1827(3):420-6.
2013: V U Chukhutsina; C Büchel; Herbert van Amerongen
Variations in the first steps of photosynthesis for the diatom Cyclotella meneghiniana grown under different light conditions.
Biochimica et biophysica acta 2013;1827(1):10-8.
2012: Lijin Tian; Michal Gwizdala; Diana Kirilovsky; Rob B M Koehorst; Ivo H M van Stokkum; Herbert van Amerongen
Picosecond kinetics of light harvesting and photoprotective quenching in wild-type and mutant phycobilisomes isolated from the cyanobacterium Synechocystis PCC 6803.
Biophysical journal 2012;102(7):1692-700.
2012: S P Laptenok; Bart van Oort; Ivo H M van Stokkum; A J W G Visser; J W Borst; Herbert van Amerongen
Disentangling picosecond events that complicate the quantitative use of the calcium sensor YC3.60.
The journal of physical chemistry. B 2012;116(9):3013-20.
2011: Jung Seok Lee; Herbert van Amerongen; Rob B M Koehorst; Jan Feijen
Time-resolved fluorescence and fluorescence anisotropy of fluorescein-labeled poly(N-isopropylacrylamide) incorporated in polymersomes.
The journal of physical chemistry. B 2011;115(45):13162-7.
2011: Lijin Tian; Aniek Jongerius; Diana Kirilovsky; Rob B M Koehorst; Ivo H M van Stokkum; Herbert van Amerongen
Site, rate, and mechanism of photoprotective quenching in cyanobacteria.
Journal of the American Chemical Society 2011;133(45):18304-11.
2011: Bart van Oort; Rienk van Grondelle; Norbert C A de Ruijter; Amandine Maréchal; Andrew A Pascal; Bruno Robert; Alexander V Ruban; Herbert van Amerongen
Different crystal morphologies lead to slightly different conformations of light-harvesting complex II as monitored by variations of the intrinsic fluorescence lifetime.
Physical chemistry chemical physics : PCCP 2011;13(27):12614-22.
2011: Sergey P Laptenok; Nina V Visser; Ruchira Engel; Adrie Westphal; Arie van Hoek; Carlo P M van Mierlo; Ivo H M van Stokkum; Herbert van Amerongen; Antonie J W G Visser
A general approach for detecting folding intermediates from steady-state and time-resolved fluorescence of single-tryptophan-containing proteins.
Biochemistry 2011;50(17):3441-50.
2010: Sashka Krumova; S P Laptenok; Jan Willem Borst; B Ughy; Z Gombos; G Ajlani; Herbert van Amerongen
Monitoring photosynthesis in individual cells of Synechocystis sp. PCC 6803 on a picosecond timescale.
Biophysical journal 2010;99(6):2006-15.
2010: Sashka Krumova; Sergey Petrovich Laptenok; László Kovács; Tünde Tóth; Arie van Hoek; Gyozo Garab; Herbert van Amerongen
Digalactosyl-diacylglycerol-deficiency lowers the thermal stability of thylakoid membranes.
Photosynthesis research 2010;105(3):229-42.
2010: Sergey P Laptenok; Jan Willem Borst; Katharine M Mullen; Ivo H M van Stokkum; Antonie J W G Visser; Herbert van Amerongen
Global analysis of Förster resonance energy transfer in live cells measured by fluorescence lifetime imaging microscopy exploiting the rise time of acceptor fluorescence.
Physical chemistry chemical physics : PCCP 2010;12(27):7593-602.
2010: Bart van Oort; Marieke Alberts; Silvia de Bianchi; Luca Dall'Osto; Roberto Bassi; Gediminas Trinkunas; Roberta Croce; Herbert van Amerongen
Effect of antenna-depletion in Photosystem II on excitation energy transfer in Arabidopsis thaliana.
Biophysical journal 2010;98(5):922-31.
2010: Rob B M Koehorst; Sergey Laptenok; Bart van Oort; Arie van Hoek; Ruud B Spruijt; Ivo H M van Stokkum; Herbert van Amerongen; Marcus A Hemminga
Profiling of dynamics in protein-lipid-water systems: a time-resolved fluorescence study of a model membrane protein with the label BADAN at specific membrane depths.
European biophysics journal : EBJ 2010;39(4):647-56.
2010: Bojk A Berghuis; Ruud B Spruijt; Rob B M Koehorst; Arie van Hoek; Sergey P Laptenok; Bart van Oort; Herbert van Amerongen
Exploring the structure of the N-terminal domain of CP29 with ultrafast fluorescence spectroscopy.
European biophysics journal : EBJ 2010;39(4):631-8.
2009: Nina V Visser; Adrie Westphal; S M Nabuurs; Arie van Hoek; Carlo P M van Mierlo; Antonie J W G Visser; J Broos; Herbert van Amerongen
5-fluorotryptophan as dual probe for ground-state heterogeneity and excited-state dynamics in apoflavodoxin.
FEBS letters 2009;583(17):2785-8.
2009: Aleh A Kavalenka; Ruud B Spruijt; Cor J A M Wolfs; Janez Strancar; Roberta Croce; Marcus A Hemminga; Herbert van Amerongen
Site-directed spin-labeling study of the light-harvesting complex CP29.
Biophysical journal 2009;96(9):3620-8.
2009: Koen Broess; Jan Willem Borst; Herbert van Amerongen
Applying two-photon excitation fluorescence lifetime imaging microscopy to study photosynthesis in plant leaves.
Photosynthesis research 2009;100(2):89-96.
2008: Sashka B Krumova; Rob B M Koehorst; Attila Bóta; Tibor Páli; Arie van Hoek; Gyozo Garab; Herbert van Amerongen
Temperature dependence of the lipid packing in thylakoid membranes studied by time- and spectrally resolved fluorescence of Merocyanine 540.
Biochimica et biophysica acta 2008;1778(12):2823-33.
2008: Nina V Visser; Adrie Westphal; Arie van Hoek; Carlo P M van Mierlo; Antonie J W G Visser; Herbert van Amerongen
Tryptophan-tryptophan energy migration as a tool to follow apoflavodoxin folding.
Biophysical journal 2008;95(5):2462-9.
2008: Koen Broess; Gediminas Trinkunas; Arie van Hoek; Roberta Croce; Herbert van Amerongen
Determination of the excitation migration time in Photosystem II consequences for the membrane organization and charge separation parameters.
Biochimica et biophysica acta 2008;1777(5):404-9.
2008: Sashka B Krumova; Cor Dijkema; Pieter de Waard; Henk Van As; Gyozo Garab; Herbert van Amerongen
Phase behavior of phosphatidylglycerol in spinach thylakoid membranes as revealed by 31P-NMR.
Biochimica et biophysica acta 2008;1778(4):997-1003.
2007: Alexander V Ruban; Rudi Berera; Cristian Ilioaia; Ivo H M van Stokkum; John T M Kennis; Andrew A Pascal; Herbert van Amerongen; Bruno Robert; Peter Horton; Rienk van Grondelle
Identification of a mechanism of photoprotective energy dissipation in higher plants.
Nature 2007;450(7169):575-8.
2007: Bart van Oort; Arie van Hoek; Alexander V Ruban; Herbert van Amerongen
Aggregation of light-harvesting complex II leads to formation of efficient excitation energy traps in monomeric and trimeric complexes.
FEBS letters 2007;581(18):3528-32.
2007: Bart van Oort; Arie van Hoek; Alexander V Ruban; Herbert van Amerongen
Equilibrium between quenched and nonquenched conformations of the major plant light-harvesting complex studied with high-pressure time-resolved fluorescence.
The journal of physical chemistry. B 2007;111(26):7631-7.
2006: Koen Broess; Gediminas Trinkunas; Chantal D van der Weij-de Wit; Jan P Dekker; Arie van Hoek; Herbert van Amerongen
Excitation energy transfer and charge separation in photosystem II membranes revisited.
Biophysical journal 2006;91(10):3776-86.
2006: Miguel A Palacios; Jörg Standfuss; Mikas Vengris; Bart van Oort; Ivo H M van Stokkum; Werner Kühlbrandt; Herbert van Amerongen; Rienk van Grondelle
A comparison of the three isoforms of the light-harvesting complex II using transient absorption and time-resolved fluorescence measurements.
Photosynthesis research 2006;88(3):269-85.
2006: Rudi Berera; Christian Herrero; Ivo H M van Stokkum; Mikas Vengris; Gerdenis Kodis; Rodrigo E Palacios; Herbert van Amerongen; Rienk van Grondelle; Devens Gust; Thomas A Moore; Ana L Moore; John T M Kennis
A simple artificial light-harvesting dyad as a model for excess energy dissipation in oxygenic photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(14):5343-8.
2005: Oscar J G Somsen; Linda B Keukens; M Niels de Keijzer; Arie van Hoek; Herbert van Amerongen
Structural heterogeneity in DNA: temperature dependence of 2-aminopurine fluorescence in dinucleotides.
Chemphyschem : a European journal of chemical physics and physical chemistry 2005;6(8):1622-7.
2005: Andrew A Pascal; Zhenfeng Liu; Koen Broess; Bart van Oort; Herbert van Amerongen; Chao Wang; Peter Horton; Bruno Robert; Wenrui Chang; Alexander V Ruban
Molecular basis of photoprotection and control of photosynthetic light-harvesting.
Nature 2005;436(7047):134-7.
2005: Vladimir I Novoderezhkin; Miguel A Palacios; Herbert van Amerongen; Rienk van Grondelle
Excitation dynamics in the LHCII complex of higher plants: modeling based on the 2.72 Angstrom crystal structure.
The journal of physical chemistry. B 2005;109(20):10493-504.
2004: Virginijus Barzda; Maksim Ionov; Herbert van Amerongen; Eugene E Gussakovsky; Yosepha Shahak
The effect of pea chloroplast alignment and variation of excitation wavelength on the circularly polarized chlorophyll luminescence.
Journal of fluorescence 2004;14(2):207-16.
2003: Miguel A Palacios; raoul frese; Claudiu C Gradinaru; Ivo H M van Stokkum; Lavanya L Premvardhan; Peter Horton; Alexander V Ruban; Rienk van Grondelle; Herbert van Amerongen
Stark spectroscopy of the light-harvesting complex II in different oligomerisation states.
Biochimica et biophysica acta 2003;1605(1-3):83-95.
2003: Jante M Salverda; Mikas Vengris; Brent P Krueger; Gregory D Scholes; Adam R Czarnoleski; Vladimir I Novoderezhkin; Herbert van Amerongen; Rienk van Grondelle
Energy transfer in light-harvesting complexes LHCII and CP29 of spinach studied with three pulse echo peak shift and transient grating.
Biophysical journal 2003;84(1):450-65.
2002: Stefania S Lampoura; Virginijus Barzda; Gabrielle M Owen; Arnold J Hoff; Herbert van Amerongen
Aggregation of LHCII Leads to a Redistribution of the Triplets over the Central Xanthophylls in LHCII.
Biochemistry 2002;41(29):9139-44.
2002: Frank L de Weerd; Ivo H M van Stokkum; Herbert van Amerongen; Jan P Dekker; Rienk van Grondelle
Pathways for energy transfer in the core light-harvesting complexes CP43 and CP47 of photosystem II.
Biophysical journal 2002;82(3):1586-97.
2001: O F Larsen; Ivo H M van Stokkum; Bas Gobets; Rienk van Grondelle; Herbert van Amerongen
Probing the structure and dynamics of a DNA hairpin by ultrafast quenching and fluorescence depolarization.
Biophysical journal 2001;81(2):1115-26.
2001: Virginijus Barzda; Cees J de Grauw; JM Vroom; FJ Kleima; Rienk van Grondelle; Herbert van Amerongen; Hans C Gerritsen
Fluorescence lifetime heterogeneity in aggregates of LHCII revealed by time-resolved microscopy.
Biophysical journal 2001;81(1):538-46.
2001: Virginijus Barzda; Vidmantas Gulbinas; R Kananavicius; V Cervinskas; Herbert van Amerongen; Rienk van Grondelle; Leonas Valkunas
Singlet-singlet annihilation kinetics in aggregates and trimers of LHCII.
Biophysical journal 2001;80(5):2409-21.
2000: Virginijus Barzda; Mikas Vengris; Leonas Valkunas; Rienk van Grondelle; Herbert van Amerongen
Generation of fluorescence quenchers from the triplet states of chlorophylls in the major light-harvesting complex II from green plants.
Biochemistry 2000;39(34):10468-77.
2000: FJ Kleima; M Wendling; E Hofmann; Erwin J G Peterman; Rienk van Grondelle; Herbert van Amerongen
Peridinin chlorophyll a protein: relating structure and steady-state spectroscopy.
Biochemistry 2000;39(17):5184-95.
2000: FJ Kleima; E Hofmann; Bas Gobets; Ivo H M van Stokkum; Rienk van Grondelle; K Diederichs; Herbert van Amerongen
Förster excitation energy transfer in peridinin-chlorophyll-a-protein.
Biophysical journal 2000;78(1):344-53.
1999: Andrew A Pascal; Claudiu C Gradinaru; U Wacker; Erwin J G Peterman; F Calkoen; Klaus-Dieter Irrgang; Peter Horton; Gernot Renger; Rienk van Grondelle; Bruno Robert; Herbert van Amerongen
Spectroscopic characterization of the spinach Lhcb4 protein (CP29), a minor light-harvesting complex of photosystem II.
European journal of biochemistry / FEBS 1999;262(3):817-23.
1999: FJ Kleima; Stephan Hobe; F Calkoen; Malene L Urbanus; Erwin J G Peterman; Rienk van Grondelle; Harald Paulsen; Herbert van Amerongen
Decreasing the chlorophyll a/b ratio in reconstituted LHCII: structural and functional consequences.
Biochemistry 1999;38(20):6587-96.
1998: Claudiu C Gradinaru; S Ozdemir; D Gülen; Ivo H M van Stokkum; Rienk van Grondelle; Herbert van Amerongen
The flow of excitation energy in LHCII monomers: implications for the structural model of the major plant antenna.
Biophysical journal 1998;75(6):3064-77.
1998: Erwin J G Peterman; Stephan-Olav Wenk; T Pullerits; L O Pâlsson; Rienk van Grondelle; Jan P Dekker; Matthias Rögner; Herbert van Amerongen
Fluorescence and absorption spectroscopy of the weakly fluorescent chlorophyll a in cytochrome b6f of Synechocystis PCC6803.
Biophysical journal 1998;75(1):389-98.
1998: Claudiu C Gradinaru; Andrew A Pascal; Frank van Mourik; Bruno Robert; Peter Horton; Rienk van Grondelle; Herbert van Amerongen
Ultrafast evolution of the excited states in the chlorophyll a/b complex CP29 from green plants studied by energy-selective pump-probe spectroscopy.
Biochemistry 1998;37(4):1143-9.
1998: Virginijus Barzda; Erwin J G Peterman; Rienk van Grondelle; Herbert van Amerongen
The influence of aggregation on triplet formation in light-harvesting chlorophyll a/b pigment-protein complex II of green plants.
Biochemistry 1998;37(2):546-51.
1998: Herbert van Amerongen; M Kooijman; M Bloemendal
Transient electric birefringence in the study of intermediate filament assembly.
Sub-cellular biochemistry 1998;31():399-421.
1997: FJ Kleima; Claudiu C Gradinaru; F Calkoen; Ivo H M van Stokkum; Rienk van Grondelle; Herbert van Amerongen
Energy transfer in LHCII monomers at 77K studied by sub-picosecond transient absorption spectroscopy.
Biochemistry 1997;36(49):15262-8.
1997: Erwin J G Peterman; Claudiu C Gradinaru; F Calkoen; J C Borst; Rienk van Grondelle; Herbert van Amerongen
Xanthophylls in light-harvesting complex II of higher plants: light harvesting and triplet quenching.
Biochemistry 1997;36(40):12208-15.
1997: M Kooijman; M Bloemendal; P Traub; Rienk van Grondelle; Herbert van Amerongen
Transient electric birefringence study of intermediate filament formation from vimentin and glial fibrillary acidic protein.
The Journal of biological chemistry 1997;272(36):22548-55.
1996: O J Somsen; Rienk van Grondelle; Herbert van Amerongen
Spectral broadening of interacting pigments: polarized absorption by photosynthetic proteins.
Biophysical journal 1996;71(4):1934-51.
1995: Erwin J G Peterman; F M Dukker; Rienk van Grondelle; Herbert van Amerongen
Chlorophyll a and carotenoid triplet states in light-harvesting complex II of higher plants.
Biophysical journal 1995;69(6):2670-8.
1995: M Kooijman; M Bloemendal; P Traub; Rienk van Grondelle; Herbert van Amerongen
Hydrodynamic and electrical characterization of T-vimentin dimers and tetramers by transient electric birefringence measurements.
The Journal of biological chemistry 1995;270(7):2931-7.
1995: M Kooijman; Herbert van Amerongen; P Traub; Rienk van Grondelle; M Bloemendal
The assembly state of the intermediate filament proteins desmin and glial fibrillary acidic protein at low ionic strength.
FEBS letters 1995;358(2):185-8.
1995: Herbert van Amerongen; WS Struve
Polarized optical spectroscopy of chromoproteins.
Methods in enzymology 1995;246():259-83.
1995: Herbert van Amerongen; Rienk van Grondelle
Transient absorption spectroscopy in study of processes and dynamics in biology.
Methods in enzymology 1995;246():201-26.
1994: S Nussberger; Jan P Dekker; Werner Kühlbrandt; B M van Bolhuis; Rienk van Grondelle; Herbert van Amerongen
Spectroscopic characterization of three different monomeric forms of the main chlorophyll a/b binding protein from chloroplast membranes.
Biochemistry 1994;33(49):14775-83.
1994: Herbert van Amerongen; S L Kwa; B M van Bolhuis; Rienk van Grondelle
Polarized fluorescence and absorption of macroscopically aligned Light Harvesting Complex II.
Biophysical journal 1994;67(2):837-47.
1994: B van Haeringen; Jan P Dekker; M Bloemendal; Matthias Rögner; Rienk van Grondelle; Herbert van Amerongen
Simultaneous measurement of electric birefringence and dichroism. A study on photosystem 1 particles.
Biophysical journal 1994;67(1):411-7.
1994: Sergei Savikhin; Herbert van Amerongen; S L Kwa; Rienk van Grondelle; WS Struve
Low-temperature energy transfer in LHC-II trimers from the Chl a/b light-harvesting antenna of photosystem II.
Biophysical journal 1994;66(5):1597-603.
1994: M Kooijman; M Bloemendal; Herbert van Amerongen; P Traub; Rienk van Grondelle
Characterization of multiple oligomeric vimentin intermediate filament units by transient electric birefringence measurements.
Journal of molecular biology 1994;236(4):1241-9.
1991: Herbert van Amerongen; B van Haeringen; M van Gurp; Rienk van Grondelle
Polarized fluorescence measurements on ordered photosynthetic antenna complexes: Chlorosomes of Chloroflexus aurantiacus and B800-B850 antenna complexes of Rhodobacter sphaeroides.
Biophysical journal 1991;59(5):992-1001.
1990: Herbert van Amerongen; S L Kwa; Rienk van Grondelle
Complex between single-stranded DNA and gene 5 protein of bacteriophage M13 studied with linear dichroism and ultraviolet absorption.
Journal of molecular biology 1990;216(3):717-27.
1990: M Bloemendal; Jack Leunissen; Herbert van Amerongen; Rienk van Grondelle
Average orientation of aromatic residues in proteins determined from linear dichroism spectroscopy. A comparison of results on bovine gamma-crystallins with X-ray data.
Journal of molecular biology 1990;216(1):181-6.
1990: Herbert van Amerongen; Maxim E Kuil; M A Scheerhagen; Rienk van Grondelle
Structure calculations for single-stranded DNA complexed with the single-stranded DNA binding protein GP32 of bacteriophage T4: a remarkable DNA structure.
Biochemistry 1990;29(23):5619-25.
1989: Maxim E Kuil; Herbert van Amerongen; P C van der Vliet; Rienk van Grondelle
Complex formation between the adenovirus DNA-binding protein and single-stranded poly(rA). Cooperativity and salt dependence.
Biochemistry 1989;28(25):9795-800.
1989: Herbert van Amerongen; Rienk van Grondelle
Orientation of the bases of single-stranded DNA and polynucleotides in complexes formed with the gene 32 protein of bacteriophage T4. A linear dichroism study.
Journal of molecular biology 1989;209(3):433-45.
1989: M Bloemendal; Herbert van Amerongen; H Bloemendal; Rienk van Grondelle
A structural study of bovine lens alpha-crystallin and its subunits by absorption and linear dichroism spectroscopy.
European journal of biochemistry / FEBS 1989;184(2):427-32.
1989: M A Scheerhagen; Maxim E Kuil; Herbert van Amerongen; Rienk van Grondelle
A model for the complex between the helix destabilizing protein GP32 of bacteriophage T4 and single-stranded DNA.
Journal of biomolecular structure & dynamics 1989;6(4):701-6.
1988: Herbert van Amerongen; Maxim E Kuil; Frank van Mourik; Rienk van Grondelle
Linear dichroism of the complex between the gene 32 protein of bacteriophage T4 and poly(1,N6-ethenoadenylic acid).
Journal of molecular biology 1988;204(2):397-405.
1987: Herbert van Amerongen; Rienk van Grondelle; P C van der Vliet
Interaction between adenovirus DNA-binding protein and single-stranded polynucleotides studied by circular dichroism and ultraviolet absorption.
Biochemistry 1987;26(15):4646-52.
1985: M A Scheerhagen; Herbert van Amerongen; Rienk van Grondelle; J Blok
Hydrodynamic studies of a DNA-protein complex. Elongation of single stranded nucleic acids upon complexation with the gene 32 protein of phage T4 deduced from electric field-induced birefringence experiments.
FEBS letters 1985;179(2):221-4.