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Willem van Berkel

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TOP 3
Elena V Eremeeva; Zhi-Jie Liu; Pavel V Natashin; Lei Song; Willem J H van Berkel; Yuguang Zhou; Eugene S Vysotski
Oxygen activation of apo-obelin-coelenterazine complex.
Manuel Hervás; Nicole G H Leferink; Milagros Medina; Blas Moreno-Beltrán; José A Navarro; Marcellus Ubbink; Qamar Bashir; Miguel A De la Rosa; Irene Dίaz-Moreno; Patricia Ferreira; Adrie H Westphal; Willem J H van Berkel
Communication between L-galactono-1,4-lactone dehydrogenase and cytochrome c.
Elena V Eremeeva; Carlo P M van Mierlo; Eugene S Vysotski; Adrie H Westphal; Willem J H van Berkel
Ligand binding and conformational states of the photoprotein obelin.

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2013: Elena V Eremeeva; Zhi-Jie Liu; Pavel V Natashin; Lei Song; Willem J H van Berkel; Yuguang Zhou; Eugene S Vysotski
Oxygen activation of apo-obelin-coelenterazine complex.
Chembiochem : a European journal of chemical biology 2013;14(6):739-45.
2013: Manuel Hervás; Nicole G H Leferink; Milagros Medina; Blas Moreno-Beltrán; José A Navarro; Marcellus Ubbink; Qamar Bashir; Miguel A De la Rosa; Irene Dίaz-Moreno; Patricia Ferreira; Adrie H Westphal; Willem J H van Berkel
Communication between L-galactono-1,4-lactone dehydrogenase and cytochrome c.
The FEBS journal 2013;280(8):1830-40.
2012: Elena V Eremeeva; Carlo P M van Mierlo; Eugene S Vysotski; Adrie H Westphal; Willem J H van Berkel
Ligand binding and conformational states of the photoprotein obelin.
FEBS letters 2012;586(23):4173-9.
2012: Jeerus Sucharitakul; Willem J H van Berkel; Thanyaporn Wongnate; Stefania Montersino; Pimchai Chaiyen
Reduction kinetics of 3-hydroxybenzoate 6-hydroxylase from Rhodococcus jostii RHA1.
Biochemistry 2012;51(21):4309-21.
2012: Tomas F M Kuijpers; Carlos-Eduardo Narváez-Cuenca; Willem J H van Berkel; Annewieke J W Verloop; Jean-Paul Vincken; Harry Gruppen
Inhibition of enzymatic browning of chlorogenic acid by sulfur-containing compounds.
Journal of agricultural and food chemistry 2012;60(13):3507-14.
2012: Stefania Montersino; Willem J H van Berkel
Functional annotation and characterization of 3-hydroxybenzoate 6-hydroxylase from Rhodococcus jostii RHA1.
Biochimica et biophysica acta 2012;1824(3):433-42.
2012: Yves J M Bollen; Saskia Lindhoud; Willem J H van Berkel; Adrie Westphal; Carlo P M van Mierlo
Distant residues mediate picomolar binding affinity of a protein cofactor.
Nature communications 2012;3():1010.
2012: Saskia Lindhoud; Willy A M Van Den Berg; Robert H H van den Heuvel; Carlo P M van Mierlo; Albert J R Heck; Willem J H van Berkel
Cofactor binding protects flavodoxin against oxidative stress.
PloS one 2012;7(7):e41363.
2011: Margreet J Oosterkamp; Dietmar H Pieper; Caroline M Plugge; Hauke Smidt; Roxanne Tapia; Willem J H van Berkel; Teun Veuskens; David C Bruce; Hajnalka E Daligault; John C Detter; Jan Gerritse; Lynne A Goodwin; Cliff S Han; Loren J Hauser; Howard Junca; Miriam L Land; Alette A M Langenhoff; Alfons J M Stams
Genome sequences of Alicycliphilus denitrificans strains BC and K601T.
Journal of bacteriology 2011;193(18):5028-9.
2011: Elena V Kudryashova; Nicole G H Leferink; Ilse G M Slot; Willem J H van Berkel
Galactonolactone oxidoreductase from Trypanosoma cruzi employs a FAD cofactor for the synthesis of vitamin C.
Biochimica et biophysica acta 2011;1814(5):545-52.
2011: Walter H Heijnis; Henk L Dekker; Leo J de Koning; Peter A Wierenga; Adrie H Westphal; Chris G de Koster; Harry Gruppen; Willem J H van Berkel
Identification of the peroxidase-generated intermolecular dityrosine cross-link in bovine α-lactalbumin.
Journal of agricultural and food chemistry 2011;59(1):444-9.
2010: Dirk Tischler; René Kermer; Janosch A D Gröning; Stefan R Kaschabek; Willem J H van Berkel; Michael Schlömann
StyA1 and StyA2B from Rhodococcus opacus 1CP: a multifunctional styrene monooxygenase system.
Journal of bacteriology 2010;192(19):5220-7.
2010: Remko K Kuipers; Henk-Jan Joosten; Willem J H van Berkel; Nicole G H Leferink; Erik Rooijen; Erik Ittmann; Frank van Zimmeren; Helge Jochens; Uwe Bornscheuer; Gert Vriend; Vitor A P Martins dos Santos; Peter J Schaap
3DM: systematic analysis of heterogeneous superfamily data to discover protein functionalities.
Proteins 2010;78(9):2101-13.
2010: Walter H Heijnis; Peter A Wierenga; Willem J H van Berkel; Harry Gruppen
Directing the oligomer size distribution of peroxidase-mediated cross-linked bovine alpha-lactalbumin.
Journal of agricultural and food chemistry 2010;58(9):5692-7.
2010: Ruei-Jiun Hung; Umar Yazdani; Jimok Yoon; Heng Wu; Taehong Yang; Nidhi Gupta; Zhiyu Huang; Willem J H van Berkel; Jonathan R Terman
Mical links semaphorins to F-actin disassembly.
Nature 2010;463(7282):823-7.
2010: Johannes H Ippel; Sotirios Koutsopoulos; Sanne M Nabuurs; Willem J H van Berkel; John van der Oost; Carlo P M van Mierlo
NMR characterization of a 264-residue hyperthermostable endo-beta-1,3-glucanase.
Biochemical and biophysical research communications 2010;391(1):370-5.
2009: Bart van Oort; Elena V Eremeeva; Rob B M Koehorst; Sergey P Laptenok; Herbert van Amerongen; Willem J H van Berkel; Natalia P Malikova; Svetlana V Markova; Eugene S Vysotski; Antonie J W G Visser; John Lee
Picosecond fluorescence relaxation spectroscopy of the calcium-discharged photoproteins aequorin and obelin.
Biochemistry 2009;48(44):10486-91.
2009: Geertruida A Posthuma-Trumpie; Aart Van Amerongen; Jakob Korf; Willem J H van Berkel
Perspectives for on-site monitoring of progesterone.
Trends in biotechnology 2009;27(11):652-60.
2009: Nicole G H Leferink; Mac Donald F Jose; Willy A M Van Den Berg; Willem J H van Berkel
Functional assignment of Glu386 and Arg388 in the active site of L-galactono-gamma-lactone dehydrogenase.
FEBS letters 2009;583(19):3199-203.
2009: Remko K P Kuipers; Henk-Jan Joosten; Eugene Verwiel; Sjoerd Paans; Jasper Akerboom; John van der Oost; Nicole G H Leferink; Willem J H van Berkel; Gert Vriend; Peter J Schaap
Correlated mutation analyses on super-family alignments reveal functionally important residues.
Proteins 2009;76(3):608-16.
2009: Dirk Tischler; Dirk Eulberg; Silvia Lakner; Stefan R Kaschabek; Willem J H van Berkel; Michael Schlömann
Identification of a novel self-sufficient styrene monooxygenase from Rhodococcus opacus 1CP.
Journal of bacteriology 2009;191(15):4996-5009.
2009: Riccardo Baron; Conor Riley; Pirom Chenprakhon; Kittisak Thotsaporn; Remko T Winter; Andrea Alfieri; Federico Forneris; Willem J H van Berkel; Pimchai Chaiyen; Marco W Fraaije; Andrea Mattevi; J Andrew McCammon
Multiple pathways guide oxygen diffusion into flavoenzyme active sites.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(26):10603-8.
2009: Elena V Eremeeva; Svetlana V Markova; Adrie H Westphal; Antonie J W G Visser; Willem J H van Berkel; Eugene S Vysotski
The intrinsic fluorescence of apo-obelin and apo-aequorin and use of its quenching to characterize coelenterazine binding.
FEBS letters 2009;583(12):1939-44.
2009: Nicole G H Leferink; Esther van Duijn; Arjan Barendregt; Albert J R Heck; Willem J H van Berkel
Galactonolactone dehydrogenase requires a redox-sensitive thiol for optimal production of vitamin C.
Plant physiology 2009;150(2):596-605.
2009: Nicole G H Leferink; Marco W Fraaije; Henk-Jan Joosten; Peter J Schaap; Andrea Mattevi; Willem J H van Berkel
Identification of a gatekeeper residue that prevents dehydrogenases from acting as oxidases.
The Journal of biological chemistry 2009;284(7):4392-7.
2008: Mariëlle J H Moonen; Nanne M Kamerbeek; Adrie Westphal; Sjef Boeren; Dick B Janssen; Marco W Fraaije; Willem J H van Berkel
Elucidation of the 4-hydroxyacetophenone catabolic pathway in Pseudomonas fluorescens ACB.
Journal of bacteriology 2008;190(15):5190-8.
2008: Mariëlle J H Moonen; Silvia A Synowsky; Willy A M Van Den Berg; Adrie Westphal; Albert J R Heck; Robert H H van den Heuvel; Marco W Fraaije; Willem J H van Berkel
Hydroquinone dioxygenase from pseudomonas fluorescens ACB: a novel member of the family of nonheme-iron(II)-dependent dioxygenases.
Journal of bacteriology 2008;190(15):5199-209.
2008: Nicole G H Leferink; Dominic P H M Heuts; Marco W Fraaije; Willem J H van Berkel
The growing VAO flavoprotein family.
Archives of biochemistry and biophysics 2008;474(2):292-301.
2008: Yee Y Lee-Hilz; Maria Stolaki; Willem J H van Berkel; Jac M M J G Aarts; Ivonne M C M Rietjens
Activation of EpRE-mediated gene transcription by quercetin glucuronides depends on their deconjugation.
Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association 2008;46(6):2128-34.
2008: Yee Y Lee-Hilz; Sovianne ter Borg; Willem J H van Berkel; Ivonne M C M Rietjens; Jac M M J G Aarts
Shifted concentration dependency of EpRE- and XRE-mediated gene expression points at monofunctional EpRE-mediated induction by flavonoids at physiologically relevant concentrations.
Toxicology in vitro : an international journal published in association with BIBRA 2008;22(4):921-6.
2008: Elena V Kudryashova; Antonie J W G Visser; Willem J H van Berkel
Monomer formation and function of p-hydroxybenzoate hydroxylase in reverse micelles and in dimethylsulfoxide/water mixtures.
Chembiochem : a European journal of chemical biology 2008;9(3):413-9.
2008: Nicole G H Leferink; Willy A M Van Den Berg; Willem J H van Berkel
l-Galactono-gamma-lactone dehydrogenase from Arabidopsis thaliana, a flavoprotein involved in vitamin C biosynthesis.
The FEBS journal 2008;275(4):713-26.
2007: Marloes Schurink; Willem J H van Berkel; Harry J Wichers; Carmen G Boeriu
Improvement of lipoxygenase inhibition by octapeptides.
Peptides 2007;28(12):2268-75.
2007: G A Posthuma-Trumpie; Kor Venema; Willem J H van Berkel; Jakob Korf
A low perfusion rate microreactor for continuous monitoring of enzyme characteristics: application to glucose oxidase.
Analytical and bioanalytical chemistry 2007;389(6):2029-33.
2007: Geertruida A Posthuma-Trumpie; Willy A M Van Den Berg; Dirk F M van de Wiel; Wim M M Schaaper; Jakob Korf; Willem J H van Berkel
Reconstitution of apoglucose oxidase with FAD conjugates for biosensoring of progesterone.
Biochimica et biophysica acta 2007;1774(7):803-12.
2007: Vivi Joosten; Willem J H van Berkel
Flavoenzymes.
Current opinion in chemical biology 2007;11(2):195-202.
2007: Marloes Schurink; Willem J H van Berkel; Harry J Wichers; Carmen G Boeriu
Novel peptides with tyrosinase inhibitory activity.
Peptides 2007;28(3):485-95.
2006: Patricia Ferreira; Francisco Javier Ruiz-Dueñas; María Jesús Martínez; Willem J H van Berkel; Angel T Martínez
Site-directed mutagenesis of selected residues at the active site of aryl-alcohol oxidase, an H2O2-producing ligninolytic enzyme.
The FEBS journal 2006;273(21):4878-88.
2006: Lei Xu; Dongfang Zhang; Wanmeng Mu; Willem J H van Berkel; Zhaofeng Luo
Reversible resolution of flavin and pterin cofactors of His-tagged Escherichia coli DNA photolyase.
Biochimica et biophysica acta 2006;1764(9):1454-61.
2006: Willem J H van Berkel; Nanne M Kamerbeek; Marco W Fraaije
Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts.
Journal of biotechnology 2006;124(4):670-89.
2006: Mamoudou H Dicko; Harry Gruppen; Riet Hilhorst; Alphons G J Voragen; Willem J H van Berkel
Biochemical characterization of the major sorghum grain peroxidase.
The FEBS journal 2006;273(10):2293-307.
2006: Marloes Schurink; Willem J H van Berkel; Harry J Wichers; Carmen G Boeriu
Identification of lipoxygenase inhibitory peptides from beta-casein by using SPOT synthesis.
Chembiochem : a European journal of chemical biology 2006;7(5):743-7.
2006: Adrie Westphal; Andrey Matorin; Mark A Hink; Jan Willem Borst; Willem J H van Berkel; Antonie J W G Visser
Real-time enzyme dynamics illustrated with fluorescence spectroscopy of p-hydroxybenzoate hydroxylase.
The Journal of biological chemistry 2006;281(16):11074-81.
2006: Erik W van Hellemond; Nicole G H Leferink; Dominic P H M Heuts; Marco W Fraaije; Willem J H van Berkel
Occurrence and biocatalytic potential of carbohydrate oxidases.
Advances in applied microbiology 2006;60():17-54.
2005: Mamoudou H Dicko; Harry Gruppen; Clarisse Barro; Alfred S Traore; Willem J H van Berkel; Alphons G J Voragen
Impact of phenolic compounds and related enzymes in sorghum varieties for resistance and susceptibility to biotic and abiotic stresses.
Journal of chemical ecology 2005;31(11):2671-88.
2005: Robert H H van den Heuvel; Nora Tahallah; Nanne M Kamerbeek; Marco W Fraaije; Willem J H van Berkel; Dick B Janssen; albert heck
Coenzyme binding during catalysis is beneficial for the stability of 4-hydroxyacetophenone monooxygenase.
The Journal of biological chemistry 2005;280(37):32115-21.
2005: Sharmini Alagaratnam; Gertie van Pouderoyen; Tjaard Pijning; Bauke W Dijkstra; Davide Cavazzini; Gian Luigi Rossi; Walter M A M van Dongen; Carlo P M van Mierlo; Willem J H van Berkel; Gerard W Canters
A crystallographic study of Cys69Ala flavodoxin II from Azotobacter vinelandii: structural determinants of redox potential.
Protein science : a publication of the Protein Society 2005;14(9):2284-95.
2005: Patricia Ferreira; Milagros Medina; Francisco Guillén; María Jesús Martínez; Willem J H van Berkel; Angel T Martínez
Spectral and catalytic properties of aryl-alcohol oxidase, a fungal flavoenzyme acting on polyunsaturated alcohols.
The Biochemical journal 2005;389(Pt 3):731-8.
2005: Yee Y Lee; Adrie Westphal; Laura H J De Haan; Jac M M J G Aarts; Ivonne M C M Rietjens; Willem J H van Berkel
Human NAD(P)H:quinone oxidoreductase inhibition by flavonoids in living cells.
Free radical biology & medicine 2005;39(2):257-65.
2005: Mamoudou H Dicko; Harry Gruppen; Alfred S Traore; Willem J H van Berkel; Alphons G J Voragen
Evaluation of the effect of germination on phenolic compounds and antioxidant activities in sorghum varieties.
Journal of agricultural and food chemistry 2005;53(7):2581-8.
2005: Yves J M Bollen; Sanne M Nabuurs; Willem J H van Berkel; Carlo P M van Mierlo
Last in, first out: the role of cofactor binding in flavodoxin folding.
The Journal of biological chemistry 2005;280(9):7836-44.
2004: Carmen G Boeriu; Gideon Oudgenoeg; Willem Th J Spekking; Lucienne B J M Berendsen; Laetitia Vancon; Hans Boumans; Harry Gruppen; Willem J H van Berkel; Colja Laane; Alphons G J Voragen
Horseradish peroxidase-catalyzed cross-linking of feruloylated arabinoxylans with beta-casein.
Journal of agricultural and food chemistry 2004;52(21):6633-9.
2004: Robert H H van den Heuvel; Willy A M Van Den Berg; Stefano Rovida; Willem J H van Berkel
Laboratory-evolved vanillyl-alcohol oxidase produces natural vanillin.
The Journal of biological chemistry 2004;279(32):33492-500.
2004: Robert H H van den Heuvel; Adrie Westphal; albert heck; Martin A Walsh; Stefano Rovida; Willem J H van Berkel; Andrea Mattevi
Structural studies on flavin reductase PheA2 reveal binding of NAD in an unusual folded conformation and support novel mechanism of action.
The Journal of biological chemistry 2004;279(13):12860-7.
2003: Ulrike Kirchner; Adrie Westphal; Rudolf Müller; Willem J H van Berkel
Phenol hydroxylase from Bacillus thermoglucosidasius A7, a two-protein component monooxygenase with a dual role for FAD.
The Journal of biological chemistry 2003;278(48):47545-53.
2003: Marco Hefti; Jacques Vervoort; Willem J H van Berkel
Deflavination and reconstitution of flavoproteins.
European journal of biochemistry / FEBS 2003;270(21):4227-42.
2003: Inna P Solyanikova; Olga V Moiseeva; Sjef Boeren; Marelle G Boersma; Marina P Kolomytseva; Jacques Vervoort; Ivonne M C M Rietjens; Ludmila A Golovleva; Willem J H van Berkel
Conversion of 2-fluoromuconate to cis-dienelactone by purified enzymes of Rhodococcus opacus 1cp.
Applied and environmental microbiology 2003;69(9):5636-42.
2003: Vasili M Travkin; Inna P Solyanikova; Ivonne M C M Rietjens; Jacques Vervoort; Willem J H van Berkel; Ludmila A Golovleva
Degradation of 3,4-dichloro- and 3,4-difluoroaniline by Pseudomonas fluorescens 26-K.
Journal of environmental science and health. Part. B, Pesticides, food contaminants, and agricultural wastes 2003;38(2):121-32.
2003: Marco Hefti; Fin J Milder; Sjef Boeren; Jacques Vervoort; Willem J H van Berkel
A His-tag based immobilization method for the preparation and reconstitution of apoflavoproteins.
Biochimica et biophysica acta 2003;1619(2):139-43.
2002: Nora Tahallah; Robert H H van den Heuvel; Willy A M Van Den Berg; Claudia S Maier; Willem J H van Berkel; albert heck
Cofactor-dependent assembly of the flavoenzyme vanillyl-alcohol oxidase.
The Journal of biological chemistry 2002;277(39):36425-32.
2002: Mamoudou H Dicko; Riet Hilhorst; Harry Gruppen; Colja Laane; Willem J H van Berkel; Alphons G J Voragen
Zymography of monophenolase and o-diphenolase activities of polyphenol oxidase.
Analytical biochemistry 2002;306(2):336-9.
2002: Mamoudou H Dicko; Riet Hilhorst; Harry Gruppen; Alfred S Traore; Colja Laane; Willem J H van Berkel; Alphons G J Voragen
Comparison of content in phenolic compounds, polyphenol oxidase, and peroxidase in grains of fifty sorghum varieties from burkina faso.
Journal of agricultural and food chemistry 2002;50(13):3780-8.
2002: Gideon Oudgenoeg; Eef Dirksen; Steen Ingemann; Riet Hilhorst; Harry Gruppen; Carmen G Boeriu; Sander R Piersma; Willem J H van Berkel; Colja Laane; Alphons G J Voragen
Horseradish peroxidase-catalyzed oligomerization of ferulic acid on a template of a tyrosine-containing tripeptide.
The Journal of biological chemistry 2002;277(24):21332-40.
2002: Marco W Fraaije; Nanne M Kamerbeek; Willem J H van Berkel; Dick B Janssen
Identification of a Baeyer-Villiger monooxygenase sequence motif.
FEBS letters 2002;518(1-3):43-7.
2002: Vasili M Travkin; Boris P Baskunov; Eugene L Golovlev; Marelle G Boersma; Sjef Boeren; Jacques Vervoort; Willem J H van Berkel; Ivonne M C M Rietjens; Ludmila A Golovleva
Reductive deamination as a new step in the anaerobic microbial degradation of halogenated anilines.
FEMS microbiology letters 2002;209(2):307-12.
2002: Andreas Meyer; Andreas Schmid; Martin Held; Adrie Westphal; Martina Rothlisberger; Hans-Peter E Kohler; Willem J H van Berkel; Bernard Witholt
Changing the substrate reactivity of 2-hydroxybiphenyl 3-monooxygenase from Pseudomonas azelaica HBP1 by directed evolution.
The Journal of biological chemistry 2002;277(7):5575-82.
2002: Robert H H van den Heuvel; Marco W Fraaije; Willem J H van Berkel
Redox properties of vanillyl-alcohol oxidase.
Methods in enzymology 2002;353():177-86.
2001: Robert H H van den Heuvel; Johann Partridge; Colja Laane; Peter J Halling; Willem J H van Berkel
Tuning of the product spectrum of vanillyl-alcohol oxidase by medium engineering.
FEBS letters 2001;503(2-3):213-6.
2001: AP Jadan; Willem J H van Berkel; Ludmila A Golovleva; Eugene L Golovlev
Purification and properties of p-hydroxybenzoate hydroxylases from Rhodococcus strains.
Biochemistry. Biokhimii͡a 2001;66(8):898-903.
2001: Robert H H van den Heuvel; Marco W Fraaije; Colja Laane; Willem J H van Berkel
Enzymatic synthesis of vanillin.
Journal of agricultural and food chemistry 2001;49(6):2954-8.
2001: Nanne M Kamerbeek; M J Moonen; J G Van Der Ven; Willem J H van Berkel; Marco W Fraaije; Dick B Janssen
4-Hydroxyacetophenone monooxygenase from Pseudomonas fluorescens ACB. A novel flavoprotein catalyzing Baeyer-Villiger oxidation of aromatic compounds.
European journal of biochemistry / FEBS 2001;268(9):2547-57.
2001: J Dekker; MH Eppink; Rob van Zwieten; T de Rijk; A F Remacha; L K Law; A M Li; K L Cheung; Willem J H van Berkel; Mustafa Yavuz Köker
Seven new mutations in the nicotinamide adenine dinucleotide reduced-cytochrome b(5) reductase gene leading to methemoglobinemia type I.
Blood 2001;97(4):1106-14.
2001: M J Moonen; Ivonne M C M Rietjens; Willem J H van Berkel
19F NMR study on the biological Baeyer-Villiger oxidation of acetophenones.
Journal of industrial microbiology & biotechnology 2001;26(1-2):35-42.
2001: Marelle G Boersma; Inna P Solyanikova; Willem J H van Berkel; Jacques Vervoort; Ludmila A Golovleva; Ivonne M C M Rietjens
19F NMR metabolomics for the elucidation of microbial degradation pathways of fluorophenols.
Journal of industrial microbiology & biotechnology 2001;26(1-2):22-34.
2000: Marco W Fraaije; Robert H H van den Heuvel; Willem J H van Berkel; Andrea Mattevi
Structural analysis of flavinylation in vanillyl-alcohol oxidase.
The Journal of biological chemistry 2000;275(49):38654-8.
2000: MH Eppink; E Cammaart; D Van Wassenaar; Wouter J Middelhoven; Willem J H van Berkel
Purification and properties of hydroquinone hydroxylase, a FAD-dependent monooxygenase involved in the catabolism of 4-hydroxybenzoate in Candida parapsilosis CBS604.
European journal of biochemistry / FEBS 2000;267(23):6832-40.
2000: Robert H H van den Heuvel; Marco W Fraaije; Willem J H van Berkel
Direction of the reactivity of vanillyl-alcohol oxidase with 4-alkylphenols.
FEBS letters 2000;481(2):109-12.
2000: Robert H H van den Heuvel; Marco W Fraaije; M Ferrer; Andrea Mattevi; Willem J H van Berkel
Inversion of stereospecificity of vanillyl-alcohol oxidase.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(17):9455-60.
2000: Robert H H van den Heuvel; Marco W Fraaije; Andrea Mattevi; Willem J H van Berkel
Asp-170 is crucial for the redox properties of vanillyl-alcohol oxidase.
The Journal of biological chemistry 2000;275(20):14799-808.
2000: ZI Finkelstein; Boris P Baskunov; Marelle G Boersma; Jacques Vervoort; Eugene L Golovlev; Willem J H van Berkel; Ludmila A Golovleva; Ivonne M C M Rietjens
Identification of fluoropyrogallols as new intermediates in biotransformation of monofluorophenols in Rhodococcus opacus 1cp.
Applied and environmental microbiology 2000;66(5):2148-53.
2000: Willem J H van Berkel; Robert H H van den Heuvel; Cees Versluis; albert heck
Detection of intact megaDalton protein assemblies of vanillyl-alcohol oxidase by mass spectrometry.
Protein science : a publication of the Protein Society 2000;9(3):435-9.
2000: Jeanette Leusen; Christof Meischl; MH Eppink; Petra M Hilarius; Martin de Boer; Ron S Weening; Anders Ahlin; L Sanders; D Goldblatt; H Skopczynska; Ewa Bernatowska; Jan Palmblad; Arthur J Verhoeven; Willem J H van Berkel; Mustafa Yavuz Köker
Four novel mutations in the gene encoding gp91-phox of human NADPH oxidase: consequences for oxidase assembly.
Blood 2000;95(2):666-73.
1999: Marco W Fraaije; Robert H H van den Heuvel; Willem J H van Berkel; Andrea Mattevi
Covalent flavinylation is essential for efficient redox catalysis in vanillyl-alcohol oxidase.
The Journal of biological chemistry 1999;274(50):35514-20.
1999: V S Bondar; Marelle G Boersma; Willem J H van Berkel; ZI Finkelstein; Eugene L Golovlev; Boris P Baskunov; Jacques Vervoort; Ludmila A Golovleva; Ivonne M C M Rietjens
Preferential oxidative dehalogenation upon conversion of 2-halophenols by Rhodococcus opacus 1G.
FEMS microbiology letters 1999;181(1):73-82.
1999: MH Eppink; K M Overkamp; HA Schreuder; Willem J H van Berkel
Switch of coenzyme specificity of p-hydroxybenzoate hydroxylase.
Journal of molecular biology 1999;292(1):87-96.
1999: Mariët J van der Werf; C van der Ven; F Barbirato; MH Eppink; Jan A M de Bont; Willem J H van Berkel
Stereoselective carveol dehydrogenase from Rhodococcus erythropolis DCL14. A novel nicotinoprotein belonging to the short chain dehydrogenase/reductase superfamily.
The Journal of biological chemistry 1999;274(37):26296-304.
1999: MH Eppink; C Bunthol; HA Schreuder; Willem J H van Berkel
Phe161 and Arg166 variants of p-hydroxybenzoate hydroxylase. Implications for NADPH recognition and structural stability.
FEBS letters 1999;443(3):251-5.
1999: Willem J H van Berkel; Jacques A E Benen; MH Eppink; Marco W Fraaije
Flavoprotein kinetics.
Methods in molecular biology (Clifton, N.J.) 1999;131():61-85.
1998: Carlo P M van Mierlo; Walter M A M van Dongen; F Vergeldt; Willem J H van Berkel; E Steensma
The equilibrium unfolding of Azotobacter vinelandii apoflavodoxin II occurs via a relatively stable folding intermediate.
Protein science : a publication of the Protein Society 1998;7(11):2331-44.
1998: Robert H H van den Heuvel; Marco W Fraaije; Colja Laane; Willem J H van Berkel
Regio- and stereospecific conversion of 4-alkylphenols by the covalent flavoprotein vanillyl-alcohol oxidase.
Journal of bacteriology 1998;180(21):5646-51.
1998: MH Eppink; HA Schreuder; Willem J H van Berkel
Interdomain binding of NADPH in p-hydroxybenzoate hydroxylase as suggested by kinetic, crystallographic and modeling studies of histidine 162 and arginine 269 variants.
The Journal of biological chemistry 1998;273(33):21031-9.
1998: Marco W Fraaije; Willem J H van Berkel; Jacques A E Benen; J Visser; Andrea Mattevi
A novel oxidoreductase family sharing a conserved FAD-binding domain.
Trends in biochemical sciences 1998;23(6):206-7.
1998: Marco W Fraaije; Robert H H van den Heuvel; J C Roelofs; Willem J H van Berkel
Kinetic mechanism of vanillyl-alcohol oxidase with short-chain 4-alkylphenols.
European journal of biochemistry / FEBS 1998;253(3):712-9.
1998: Jacques A E Benen; Paloma Sánchez-Torres; M J Wagemaker; Marco W Fraaije; Willem J H van Berkel; Jaap Visser
Molecular cloning, sequencing, and heterologous expression of the vaoA gene from Penicillium simplicissimum CBS 170.90 encoding vanillyl-alcohol oxidase.
The Journal of biological chemistry 1998;273(14):7865-72.
1998: MH Eppink; HA Schreuder; Willem J H van Berkel
Lys42 and Ser42 variants of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens reveal that Arg42 is essential for NADPH binding.
European journal of biochemistry / FEBS 1998;253(1):194-201.
1998: M G Boersma; T Y Dinarieva; Wouter J Middelhoven; Willem J H van Berkel; J Doran; Jacques Vervoort; Ivonne M C M Rietjens
19F nuclear magnetic resonance as a tool to investigate microbial degradation of fluorophenols to fluorocatechols and fluoromuconates.
Applied and environmental microbiology 1998;64(4):1256-63.
1998: Marco W Fraaije; Klaas Sjollema; M Veenhuis; Willem J H van Berkel
Subcellular localization of vanillyl-alcohol oxidase in Penicillium simplicissimum.
FEBS letters 1998;422(1):65-8.
1998: V S Bondar; Marelle G Boersma; Eugene L Golovlev; Jacques Vervoort; Willem J H van Berkel; ZI Finkelstein; Inna P Solyanikova; Ludmila A Golovleva; Ivonne M C M Rietjens
19F NMR study on the biodegradation of fluorophenols by various Rhodococcus species.
Biodegradation 1998;9(6):475-86.
1997: F J van der Bolt; Robert H H van den Heuvel; Jacques Vervoort; Willem J H van Berkel
19F NMR study on the regiospecificity of hydroxylation of tetrafluoro-4-hydroxybenzoate by wild-type and Y385F p-hydroxybenzoate hydroxylase: evidence for a consecutive oxygenolytic dehalogenation mechanism.
Biochemistry 1997;36(46):14192-201.
1997: MH Eppink; HA Schreuder; Willem J H van Berkel
Identification of a novel conserved sequence motif in flavoprotein hydroxylases with a putative dual function in FAD/NAD(P)H binding.
Protein science : a publication of the Protein Society 1997;6(11):2454-8.
1997: MH Eppink; Sjef Boeren; Jacques Vervoort; Willem J H van Berkel
Purification and properties of 4-hydroxybenzoate 1-hydroxylase (decarboxylating), a novel flavin adenine dinucleotide-dependent monooxygenase from Candida parapsilosis CBS604.
Journal of bacteriology 1997;179(21):6680-7.
1997: M F van Iersel; MH Eppink; Willem J H van Berkel; F M Rombouts; T Abee
Purification and characterization of a novel NADP-dependent branched-chain alcohol dehydrogenase from Saccharomyces cerevisiae.
Applied and environmental microbiology 1997;63(10):4079-82.
1997: Marco W Fraaije; Willem J H van Berkel
Catalytic mechanism of the oxidative demethylation of 4-(methoxymethyl)phenol by vanillyl-alcohol oxidase. Evidence for formation of a p-quinone methide intermediate.
The Journal of biological chemistry 1997;272(29):18111-6.
1997: Andrea Mattevi; Marco W Fraaije; A Mozzarelli; L Olivi; Alessandro Coda; Willem J H van Berkel
Crystal structures and inhibitor binding in the octameric flavoenzyme vanillyl-alcohol oxidase: the shape of the active-site cavity controls substrate specificity.
Structure (London, England : 1993) 1997;5(7):907-20.
1997: Andrea Mattevi; Marco W Fraaije; Alessandro Coda; Willem J H van Berkel
Crystallization and preliminary X-ray analysis of the flavoenzyme vanillyl-alcohol oxidase from Penicillium simplicissimum.
Proteins 1997;27(4):601-3.
1997: Marco W Fraaije; Andrea Mattevi; Willem J H van Berkel
Mercuration of vanillyl-alcohol oxidase from Penicillium simplicissimum generates inactive dimers.
FEBS letters 1997;402(1):33-5.
1996: B Seibold; M Matthes; MH Eppink; F Lingens; Willem J H van Berkel; R Müller
4-Hydroxybenzoate hydroxylase from Pseudomonas sp. CBS3. Purification, characterization, gene cloning, sequence analysis and assignment of structural features determining the coenzyme specificity.
European journal of biochemistry / FEBS 1996;239(2):469-78.
1996: F J van der Bolt; Jacques Vervoort; Willem J H van Berkel
Flavin motion in p-hydroxybenzoate hydroxylase. Substrate and effector specificity of the Tyr22-->Ala mutant.
European journal of biochemistry / FEBS 1996;237(3):592-600.
1996: Marco W Fraaije; H P Roubroeks; Wilfred R Hagen; Willem J H van Berkel
Purification and characterization of an intracellular catalase-peroxidase from Penicillium simplicissimum.
European journal of biochemistry / FEBS 1996;235(1-2):192-8.
1995: Marco W Fraaije; Cees Veeger; Willem J H van Berkel
Substrate specificity of flavin-dependent vanillyl-alcohol oxidase from Penicillium simplicissimum. Evidence for the production of 4-hydroxycinnamyl alcohols from 4-allylphenols.
European journal of biochemistry / FEBS 1995;234(1):271-7.
1995: MH Eppink; HA Schreuder; Willem J H van Berkel
Structure and function of mutant Arg44Lys of 4-hydroxybenzoate hydroxylase implications for NADPH binding.
European journal of biochemistry / FEBS 1995;231(1):157-65.
1994: Willem J H van Berkel; MH Eppink; HA Schreuder
Crystal structure of p-hydroxybenzoate hydroxylase reconstituted with the modified FAD present in alcohol oxidase from methylotrophic yeasts: evidence for an arabinoflavin.
Protein science : a publication of the Protein Society 1994;3(12):2245-53.
1994: H A Schreuder; Andrea Mattevi; Galina Obmolova; Kor H Kalk; Wim G J Hol; F J van der Bolt; Willem J H van Berkel
Crystal structures of wild-type p-hydroxybenzoate hydroxylase complexed with 4-aminobenzoate,2,4-dihydroxybenzoate, and 2-hydroxy-4-aminobenzoate and of the Tyr222Ala mutant complexed with 2-hydroxy-4-aminobenzoate. Evidence for a proton channel and a new binding mode of the flavin ring.
Biochemistry 1994;33(33):10161-70.
1994: Willem J H van Berkel; MH Eppink; W J Middelhoven; Jacques Vervoort; Ivonne M C M Rietjens
Catabolism of 4-hydroxybenzoate in Candida parapsilosis proceeds through initial oxidative decarboxylation by a FAD-dependent 4-hydroxybenzoate 1-hydroxylase.
FEMS microbiology letters 1994;121(2):207-15.
1994: F J van der Bolt; M C Drijfhout; MH Eppink; W R Hagen; Willem J H van Berkel
Selective cysteine-->serine replacements in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens allow the unambiguous assignment of Cys211 as the site of modification by spin-labeled p-chloromercuribenzoate.
Protein engineering 1994;7(6):801-4.
1994: Jacques Vervoort; D Heering; S Peelen; Willem J H van Berkel
Flavodoxins.
Methods in enzymology 1994;243():188-203.
1993: S Peelen; Ivonne M C M Rietjens; Willem J H van Berkel; W A van Workum; Jacques Vervoort
19F-NMR study on the pH-dependent regioselectivity and rate of the ortho-hydroxylation of 3-fluorophenol by phenol hydroxylase from Trichosporon cutaneum. Implications for the reaction mechanism.
European journal of biochemistry / FEBS 1993;218(2):345-53.
1993: K Eschrich; F J van der Bolt; Aart de Kok; Willem J H van Berkel
Role of Tyr201 and Tyr385 in substrate activation by p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens.
European journal of biochemistry / FEBS 1993;216(1):137-46.
1993: Andrea Mattevi; Galina Obmolova; Kor H Kalk; Willem J H van Berkel; Wim G J Hol
Three-dimensional structure of lipoamide dehydrogenase from Pseudomonas fluorescens at 2.8 A resolution. Analysis of redox and thermostability properties.
Journal of molecular biology 1993;230(4):1200-15.
1993: Marelle G Boersma; N H Cnubben; Willem J H van Berkel; M Blom; Jacques Vervoort; Ivonne M C M Rietjens
Role of cytochromes P-450 and flavin-containing monooxygenase in the biotransformation of 4-fluoro-N-methylaniline.
Drug metabolism and disposition: the biological fate of chemicals 1993;21(2):218-30.
1992: Willem J H van Berkel; Adrie Westphal; K Eschrich; MH Eppink; Aart de Kok
Substitution of Arg214 at the substrate-binding site of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens.
European journal of biochemistry / FEBS 1992;210(2):411-9.
1992: Philippe I H Bastiaens; Arie van Hoek; Willem J H van Berkel; Aart de Kok; Antonie J W G Visser
Molecular relaxation spectroscopy of flavin adenine dinucleotide in wild type and mutant lipoamide dehydrogenase from Azotobacter vinelandii.
Biochemistry 1992;31(31):7061-8.
1992: Jacques A E Benen; Willem J H van Berkel; Cees Veeger; Aart de Kok
Lipoamide dehydrogenase from Azotobacter vinelandii. The role of the C-terminus in catalysis and dimer stabilization.
European journal of biochemistry / FEBS 1992;207(2):499-505.
1992: Jacques A E Benen; Willem J H van Berkel; N Dieteren; D Arscott; C Williams; Cees Veeger; Aart de Kok
Lipoamide dehydrogenase from Azotobacter vinelandii: site-directed mutagenesis of the His450-Glu455 diad. Kinetics of wild-type and mutated enzymes.
European journal of biochemistry / FEBS 1992;207(2):487-97.
1992: Jacques Vervoort; Ivonne M C M Rietjens; Willem J H van Berkel; Cees Veeger
Frontier orbital study on the 4-hydroxybenzoate-3-hydroxylase-dependent activity with benzoate derivatives.
European journal of biochemistry / FEBS 1992;206(2):479-84.
1991: Willem J H van Berkel; A G Regelink; J J Beintema; Aart de Kok
The conformational stability of the redox states of lipoamide dehydrogenase from Azotobacter vinelandii.
European journal of biochemistry / FEBS 1991;202(3):1049-55.
1991: Jacques A E Benen; Willem J H van Berkel; Z Zak; T Visser; Cees Veeger; Aart de Kok
Lipoamide dehydrogenase from Azotobacter vinelandii: site-directed mutagenesis of the His450-Glu455 diad. Spectral properties of wild type and mutated enzymes.
European journal of biochemistry / FEBS 1991;202(3):863-72.
1991: Willem J H van Berkel; W J Van Den Tweel
Purification and characterisation of 3-hydroxyphenylacetate 6-hydroxylase: a novel FAD-dependent monooxygenase from a Flavobacterium species.
European journal of biochemistry / FEBS 1991;201(3):585-92.
1991: Jacques Vervoort; Willem J H van Berkel; F Müller; C T Moonen
NMR studies on p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens and salicylate hydroxylase from Pseudomonas putida.
European journal of biochemistry / FEBS 1991;200(3):731-8.
1991: Willem J H van Berkel; Jacques A E Benen; M C Snoek
On the FAD-induced dimerization of apo-lipoamide dehydrogenase from Azotobacter vinelandii and Pseudomonas fluorescens. Kinetics of reconstitution.
European journal of biochemistry / FEBS 1991;197(3):769-79.
1990: K Eschrich; Willem J H van Berkel; Adrie Westphal; Aart de Kok; Andrea Mattevi; Galina Obmolova; Kor H Kalk; Wim G J Hol
Engineering of microheterogeneity-resistant p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens.
FEBS letters 1990;277(1-2):197-9.
1989: Jacques A E Benen; Willem J H van Berkel; Walter M A M van Dongen; F Müller; Aart de Kok
Molecular cloning and sequence determination of the lpd gene encoding lipoamide dehydrogenase from Pseudomonas fluorescens.
Journal of general microbiology 1989;135(7):1787-97.
1989: Willem J H van Berkel; F Müller
The temperature and pH dependence of some properties of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens.
European journal of biochemistry / FEBS 1989;179(2):307-14.
1988: Willem J H van Berkel; W A Van den Berg; F Müller
Large-scale preparation and reconstitution of apo-flavoproteins with special reference to butyryl-CoA dehydrogenase from Megasphaera elsdenii. Hydrophobic-interaction chromatography.
European journal of biochemistry / FEBS 1988;178(1):197-207.
1988: Willem J H van Berkel; F Müller; Peter A Jekel; W J Weijer; HA Schreuder; Rik K Wierenga
Chemical modification of tyrosine-38 in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens by 5'-p-fluorosulfonylbenzoyladenosine: a probe for the elucidation of the NADPH binding site? Involvement in catalysis, assignment in sequence and fitting to the tertiary structure.
European journal of biochemistry / FEBS 1988;176(2):449-59.
1986: R A Wijnands; W J Weijer; F Müller; Peter A Jekel; Willem J H van Berkel; Jaap J Beintema
Chemical modification of tyrosine residues in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens: assignment in sequence and catalytic involvement.
Biochemistry 1986;25(15):4211-8.
1984: Willem J H van Berkel; W J Weijer; F Müller; Peter A Jekel; Jaap J Beintema
Chemical modification of sulfhydryl groups in p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens. Involvement in catalysis and assignment in the sequence.
European journal of biochemistry / FEBS 1984;145(2):245-56.