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Mark van de Wiel

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

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Oligonucleotide Array Sequence Analysis

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Physiology

Neoplastic Gene Expression Regulation

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Chemicals & Drugs

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Publications

TOP 3
Diosdado B; van de Wiel M A; Terhaar Sive Droste J S; Mongera S; Postma C; Meijerink W J H J; Carvalho B; Meijer G A
MiR-17-92 cluster is associated with 13q gain and c-myc expression during colorectal adenoma to adenocarcinoma progression.
van de Wiel Mark A; Berkhof Johannes; van Wieringen Wessel N
Testing the prediction error difference between 2 predictors.
van de Wiel Mark A; Brosens Rebecca; Eilers Paul H C; Kumps Candy; Meijer Gerrit A; Menten Björn; Sistermans Erik; Speleman Frank; Timmerman Marieke E; Ylstra Bauke
Smoothing waves in array CGH tumor profiles.

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All Publications

2009: Diosdado B; van de Wiel M A; Terhaar Sive Droste J S; Mongera S; Postma C; Meijerink W J H J; Carvalho B; Meijer G A
MiR-17-92 cluster is associated with 13q gain and c-myc expression during colorectal adenoma to adenocarcinoma progression.
British journal of cancer 2009;101(4):707-14.
2009: van de Wiel Mark A; Berkhof Johannes; van Wieringen Wessel N
Testing the prediction error difference between 2 predictors.
Biostatistics (Oxford, England) 2009;10(3):550-60.
2009: van de Wiel Mark A; Brosens Rebecca; Eilers Paul H C; Kumps Candy; Meijer Gerrit A; Menten Björn; Sistermans Erik; Speleman Frank; Timmerman Marieke E; Ylstra Bauke
Smoothing waves in array CGH tumor profiles.
Bioinformatics (Oxford, England) 2009;25(9):1099-104.
2009: Oudejans Joost J; van Wieringen Wessel N; Smeets Serge J; Tijssen Marianne; Vosse Sjoerd J; Meijer Chris J L M; Meijer Gerrit A; van de Wiel Mark A; Ylstra Bauke
Identification of genes putatively involved in the pathogenesis of diffuse large B-cell lymphomas by integrative genomics.
Genes, chromosomes & cancer 2009;48(3):250-60.
2009: van Wieringen Wessel N; van de Wiel Mark A
Nonparametric testing for DNA copy number induced differential mRNA gene expression.
Biometrics 2009;65(1):19-29.
2009: Fijneman Remond J A; Bade Lindsey K; Peham Johannes R; van de Wiel Mark A; van Hinsbergh Victor W M; Meijer Gerrit A; O'Sullivan Michael G; Cormier Robert T
Pla2g2a attenuates colon tumorigenesis in azoxymethane-treated C57BL/6 mice; expression studies reveal Pla2g2a target genes and pathways.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2009;31(5):345-56.
2009: Smeets Serge J; Brakenhoff Ruud H; Ylstra Bauke; van Wieringen Wessel N; van de Wiel Mark A; Leemans C René; Braakhuis Boudewijn J M
Genetic classification of oral and oropharyngeal carcinomas identifies subgroups with a different prognosis.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2009;31(4):291-300.
2009: Wilting Saskia M; Smeets Serge J; Snijders Peter Jf; van Wieringen Wessel N; van de Wiel Mark A; Meijer Gerrit A; Ylstra Bauke; Leemans C René; Meijer Chris Jlm; Brakenhoff Ruud H; Braakhuis Boudewijn Jm; Steenbergen Renske Dm
Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck.
BMC medical genomics 2009;2():32.
2008: Fijneman R J A; Peham J R; van de Wiel M A; Meijer G A; Matise I; Velcich A; Cormier R T
Expression of Pla2g2a prevents carcinogenesis in Muc2-deficient mice.
Cancer science 2008;99(11):2113-9.
2008: Van Wieringen Wessel N; Van De Wiel Mark A; Ylstra Bauke
Weighted clustering of called array CGH data.
Biostatistics (Oxford, England) 2008;9(3):484-500.
2008: de Wilde Jillian; Wilting Saskia M; Meijer Chris J L M; van de Wiel Mark A; Ylstra Bauke; Snijders Peter J F; Steenbergen Renske D M
Gene expression profiling to identify markers associated with deregulated hTERT in HPV-transformed keratinocytes and cervical cancer.
International journal of cancer. Journal international du cancer 2008;122(4):877-88.
2008: Coffa Jordy; van de Wiel Mark A; Diosdado Begoña; Carvalho Beatriz; Schouten Jan; Meijer Gerrit A
MLPAnalyzer: data analysis tool for reliable automated normalization of MLPA fragment data.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2008;30(4):323-35.
2008: Pham Thang V; van de Wiel Mark A; Jimenez Connie R
Support vector machine approach to separate control and breast cancer serum samples.
Statistical applications in genetics and molecular biology 2008;7(2):Article11.
2008: Kim Kyung In; van de Wiel Mark A
Effects of dependence in high-dimensional multiple testing problems.
BMC bioinformatics 2008;9():114.
2007: Cillessen Saskia A G M; Hess Corine J; Hooijberg Erik; Castricum Kitty C M; Kortman Pim; Denkers Fedor; Vos Wim; van de Wiel Mark A; Schuurhuis Gerrit J; Ossenkoppele Gert J; Meijer Chris J L M; Oudejans Joost J
Inhibition of the intrinsic apoptosis pathway downstream of caspase-9 activation causes chemotherapy resistance in diffuse large B-cell lymphoma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(23):7012-21.
2007: van de Wiel Mark A; Kim Kyung In
Estimating the false discovery rate using nonparametric deconvolution.
Biometrics 2007;63(3):806-15.
2007: Vékony Hedy; Ylstra Bauke; Wilting Saskia M; Meijer Gerrit A; van de Wiel Mark A; Leemans C René; van der Waal Isaäc; Bloemena Elisabeth
DNA copy number gains at loci of growth factors and their receptors in salivary gland adenoid cystic carcinoma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(11):3133-9.
2007: van de Wiel Mark A; Kim Kyung In; Vosse Sjoerd J; van Wieringen Wessel N; Wilting Saskia M; Ylstra Bauke
CGHcall: calling aberrations for array CGH tumor profiles.
Bioinformatics (Oxford, England) 2007;23(7):892-4.
2007: Muris J J F; Ylstra B; Cillessen S A G M; Ossenkoppele G J; Kluin-Nelemans J C; Eijk P P; Nota B; Tijssen M; de Boer W P H; van de Wiel M; van den Ijssel P R L A; Jansen P; de Bruin P C; van Krieken J H J M; Meijer G A; Meijer C J L M; Oudejans J J
Profiling of apoptosis genes allows for clinical stratification of primary nodal diffuse large B-cell lymphomas.
British journal of haematology 2007;136(1):38-47.
2007: van Wieringen Wessel N; van de Wiel Mark A; Ylstra Bauke
Normalized, Segmented or Called aCGH Data?
Cancer informatics 2007;3():321-7.
2007: van de Wiel Mark A; van Wieringen Wessel N
CGHregions: Dimension Reduction for Array CGH Data with Minimal Information Loss.
Cancer informatics 2007;3():55-63.
2007: Chin Suet F; Teschendorff Andrew E; Marioni John C; Wang Yanzhong; Barbosa-Morais Nuno L; Thorne Natalie P; Costa Jose L; Pinder Sarah E; van de Wiel Mark A; Green Andrew R; Ellis Ian O; Porter Peggy L; Tavaré Simon; Brenton James D; Ylstra Bauke; Caldas Carlos
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.
Genome biology 2007;8(10):R215.
2006: Wilting S M; Snijders P J F; Meijer G A; Ylstra B; van den Ijssel P R L A; Snijders A M; Albertson D G; Coffa J; Schouten J P; van de Wiel M A; Meijer C J L M; Steenbergen R D M
Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix.
The Journal of pathology 2006;209(2):220-30.
2006: Smeets S J; Braakhuis B J M; Abbas S; Snijders P J F; Ylstra B; van de Wiel M A; Meijer G A; Leemans C R; Brakenhoff R H
Genome-wide DNA copy number alterations in head and neck squamous cell carcinomas with or without oncogene-expressing human papillomavirus.
Oncogene 2006;25(17):2558-64.
2005: van de Wiel Mark A; Costa Jose L; Smid Kees; Oudejans Cees B M; Bergman Andries M; Meijer Gerrit A; Peters Godefridus J; Ylstra Bauke
Expression microarray analysis and oligo array comparative genomic hybridization of acquired gemcitabine resistance in mouse colon reveals selection for chromosomal aberrations.
Cancer research 2005;65(22):10208-13.
2005: Greijer A E; van der Groep P; Kemming D; Shvarts A; Semenza G L; Meijer G A; van de Wiel M A; Belien J A M; van Diest P J; van der Wall E
Up-regulation of gene expression by hypoxia is mediated predominantly by hypoxia-inducible factor 1 (HIF-1).
The Journal of pathology 2005;206(3):291-304.
2005: van de Wiel Mark A; Smeets Serge J; Brakenhoff Ruud H; Ylstra Bauke
CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data.
Bioinformatics (Oxford, England) 2005;21(14):3193-4.
2004: Armstrong Nicola J; van de Wiel Mark A
Microarray data analysis: from hypotheses to conclusions using gene expression data.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2004;26(5-6):279-90.

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