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John van der Oost

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Co-Publications
Name
56
DE VOS, WILLEM
19
Kengen, Servé
16
Brouns, Stan
14
Verhees, Corné
13
Akerboom, Jasper
10
Kaper, Thijs
9
Lebbink, Joyce
9
Brinkman, Arie
9
Ettema, Thijs
8
Kluskens, Leon
8
Rice, David
8
Sedelnikova, Svetlana
8
Smidt, Hauke
7
Koutsopoulos, Sotirios
7
Ward, Donald

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Publications

TOP 3
Pijning Tjaard; van Pouderoyen Gertie; Kluskens Leon; van der Oost John; Dijkstra Bauke W
The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer.
Simon Gwénola; Walther Jasper; Zabeti Nathalie; Combet-Blanc Yannick; Auria Richard; van der Oost John; Casalot Laurence
Effect of O2 concentrations on Sulfolobus solfataricus P2.
van der Oost John; Jore Matthijs M; Westra Edze R; Lundgren Magnus; Brouns Stan J J
CRISPR-based adaptive and heritable immunity in prokaryotes.

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All Publications

2009: Pijning Tjaard; van Pouderoyen Gertie; Kluskens Leon; van der Oost John; Dijkstra Bauke W
The crystal structure of a hyperthermoactive exopolygalacturonase from Thermotoga maritima reveals a unique tetramer.
FEBS letters 2009;583(22):3665-70.
2009: Simon Gwénola; Walther Jasper; Zabeti Nathalie; Combet-Blanc Yannick; Auria Richard; van der Oost John; Casalot Laurence
Effect of O2 concentrations on Sulfolobus solfataricus P2.
FEMS microbiology letters 2009;299(2):255-60.
2009: van der Oost John; Jore Matthijs M; Westra Edze R; Lundgren Magnus; Brouns Stan J J
CRISPR-based adaptive and heritable immunity in prokaryotes.
Trends in biochemical sciences 2009;34(8):401-7.
2009: Kuipers Remko K P; Joosten Henk-Jan; Verwiel Eugene; Paans Sjoerd; Akerboom Jasper; van der Oost John; Leferink Nicole G H; van Berkel Willem J H; Vriend Gert; Schaap Peter J
Correlated mutation analyses on super-family alignments reveal functionally important residues.
Proteins 2009;76(3):608-16.
2009: Levisson Mark; van der Oost John; Kengen Servé W M
Carboxylic ester hydrolases from hyperthermophiles.
Extremophiles : life under extreme conditions 2009;13(4):567-81.
2009: Ilari Andrea; Fiorillo Annarita; Angelaccio Sebastiana; Florio Rita; Chiaraluce Roberta; van der Oost John; Consalvi Valerio
Crystal structure of a family 16 endoglucanase from the hyperthermophile Pyrococcus furiosus--structural basis of substrate recognition.
The FEBS journal 2009;276(4):1048-58.
2009: Albers Sonja-Verena; Birkeland Nils-Kåre; Driessen Arnold J M; Gertig Susanne; Haferkamp Patrick; Klenk Hans-Peter; Kouril Theresa; Manica Andrea; Pham Trong K; Ruoff Peter; Schleper Christa; Schomburg Dietmar; Sharkey Kieran J; Siebers Bettina; Sierocinski Pawel; Steuer Ralf; van der Oost John; Westerhoff Hans V; Wieloch Patricia; Wright Phillip C; Zaparty Melanie
SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.
Biochemical Society transactions 2009;37(Pt 1):58-64.
2009: de Koning Bart; Blombach Fabian; Wu Hao; Brouns Stan J J; van der Oost John
Role of multiprotein bridging factor 1 in archaea: bridging the domains?
Biochemical Society transactions 2009;37(Pt 1):52-7.
2009: Levisson Mark; Sun Lei; Hendriks Sjon; Swinkels Peter; Akveld Twan; Bultema Jelle B; Barendregt Arjan; van den Heuvel Robert H H; Dijkstra Bauke W; van der Oost John; Kengen Servé W M
Crystal structure and biochemical properties of a novel thermostable esterase containing an immunoglobulin-like domain.
Journal of molecular biology 2009;385(3):949-62.
2009: Blombach Fabian; Makarova Kira S; Marrero Jeannette; Siebers Bettina; Koonin Eugene V; van der Oost John
Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea.
Biology direct 2009;4():39.
2009: Makarova Kira S; Wolf Yuri I; van der Oost John; Koonin Eugene V
Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.
Biology direct 2009;4():29.
2009: Wolterink-van Loo Suzanne; Siemerink Marco A J; Perrakis Georgios; Kaper Thijs; Kengen Servé W M; van der Oost John
Improving low-temperature activity of Sulfolobus acidocaldarius 2-keto-3-deoxygluconate aldolase.
Archaea (Vancouver, B.C.) 2009;2(4):233-9.
2008: Gábor Krisztina; Hailesellasse Sene Kagnew; Smidt Hauke; de Vos Willem M; van der Oost John
Divergent roles of CprK paralogues from Desulfitobacterium hafniense in activating gene expression.
Microbiology (Reading, England) 2008;154(Pt 12):3686-96.
2008: van de Werken Harmen J G; Verhaart Marcel R A; VanFossen Amy L; Willquist Karin; Lewis Derrick L; Nichols Jason D; Goorissen Heleen P; Mongodin Emmanuel F; Nelson Karen E; van Niel Ed W J; Stams Alfons J M; Ward Donald E; de Vos Willem M; van der Oost John; Kelly Robert M; Kengen Servé W M
Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.
Applied and environmental microbiology 2008;74(21):6720-9.
2008: Levy Colin; Pike Katharine; Heyes Derren J; Joyce M Gordon; Gabor Krisztina; Smidt Hauke; van der Oost John; Leys David
Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator.
Molecular microbiology 2008;70(1):151-67.
2008: Brouns Stan J J; Jore Matthijs M; Lundgren Magnus; Westra Edze R; Slijkhuis Rik J H; Snijders Ambrosius P L; Dickman Mark J; Makarova Kira S; Koonin Eugene V; van der Oost John
Small CRISPR RNAs guide antiviral defense in prokaryotes.
Science (New York, N.Y.) 2008;321(5891):960-4.
2008: Machielsen Ronnie; Leferink Nicole G H; Hendriks Annemarie; Brouns Stan J J; Hennemann Hans-Georg; Daussmann Thomas; van der Oost John
Laboratory evolution of Pyrococcus furiosus alcohol dehydrogenase to improve the production of (2S,5S)-hexanediol at moderate temperatures.
Extremophiles : life under extreme conditions 2008;12(4):587-94.
2008: Brouns Stan J J; Barends Thomas R M; Worm Petra; Akerboom Jasper; Turnbull Andrew P; Salmon Laurent; van der Oost John
Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
Journal of molecular biology 2008;379(2):357-71.
2008: Wolterink-van Loo Suzanne; Levisson Mark; Cabrières Maud C; Franssen Maurice C R; van der Oost John
Characterization of a thermostable dihydrodipicolinate synthase from Thermoanaerobacter tengcongensis.
Extremophiles : life under extreme conditions 2008;12(3):461-9.
2008: Ettema Thijs J G; Ahmed Hatim; Geerling Ans C M; van der Oost John; Siebers Bettina
The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway.
Extremophiles : life under extreme conditions 2008;12(1):75-88.
2007: Chiaraluce Roberta; Florio Rita; Angelaccio Sebastiana; Gianese Giulio; van Lieshout Johan F T; van der Oost John; Consalvi Valerio
Tertiary structure in 7.9 M guanidinium chloride--the role of Glu53 and Asp287 in Pyrococcus furiosus endo-beta-1,3-glucanase.
The FEBS journal 2007;274(23):6167-79.
2007: Koutsopoulos Sotirios; van der Oost John; Norde Willem
Kinetically controlled refolding of a heat-denatured hyperthermostable protein.
The FEBS journal 2007;274(22):5915-23.
2007: Kanai Tamotsu; Akerboom Jasper; Takedomi Shogo; van de Werken Harmen J G; Blombach Fabian; van der Oost John; Murakami Taira; Atomi Haruyuki; Imanaka Tadayuki
A global transcriptional regulator in Thermococcus kodakaraensis controls the expression levels of both glycolytic and gluconeogenic enzyme-encoding genes.
The Journal of biological chemistry 2007;282(46):33659-70.
2007: Sun Lei; Levisson Mark; Hendriks Sjon; Akveld Twan; Kengen Servé W M; Dijkstra Bauke W; van der Oost John
Crystallization and preliminary crystallographic analysis of an esterase with a novel domain from the hyperthermophile Thermotoga maritima.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 9):777-9.
2007: Unsworth Larry D; van der Oost John; Koutsopoulos Sotirios
Hyperthermophilic enzymes--stability, activity and implementation strategies for high temperature applications.
The FEBS journal 2007;274(16):4044-56.
2007: Brouns Stan J J; Turnbull Andrew P; Willemen Hanneke L D M; Akerboom Jasper; van der Oost John
Crystal structure and biochemical properties of the D-arabinose dehydrogenase from Sulfolobus solfataricus.
Journal of molecular biology 2007;371(5):1249-60.
2007: Levisson Mark; van der Oost John; Kengen Servé W M
Characterization and structural modeling of a new type of thermostable esterase from Thermotoga maritima.
The FEBS journal 2007;274(11):2832-42.
2007: Wolterink-van Loo Suzanne; van Eerde André; Siemerink Marco A J; Akerboom Jasper; Dijkstra Bauke W; van der Oost John
Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases.
The Biochemical journal 2007;403(3):421-30.
2007: Mazon Hortense; Gábor Krisztina; Leys David; Heck Albert J R; van der Oost John; van den Heuvel Robert H H
Transcriptional activation by CprK1 is regulated by protein structural changes induced by effector binding and redox state.
The Journal of biological chemistry 2007;282(15):11281-90.
2007: Wu Hao; Sun Lei; Brouns Stan J J; Fu Sheng; Akerboom Jasper; Li Xuemei; van der Oost John
Purification, crystallization and preliminary crystallographic analysis of a GTP-binding protein from the hyperthermophilic archaeon Sulfolobus solfataricus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 3):239-41.
2006: van Eerde André; Wolterink-van Loo Suzanne; van der Oost John; Dijkstra Bauke W
Fortuitous structure determination of 'as-isolated' Escherichia coli bacterioferritin in a novel crystal form.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 11):1061-6.
2006: van den Heuvel Robert H H; van Duijn Esther; Mazon Hortense; Synowsky Silvia A; Lorenzen Kristina; Versluis Cees; Brouns Stan J J; Langridge Dave; van der Oost John; Hoyes John; Heck Albert J R
Improving the performance of a quadrupole time-of-flight instrument for macromolecular mass spectrometry.
Analytical chemistry 2006;78(21):7473-83.
2006: Brouns Stan J J; Walther Jasper; Snijders Ambrosius P L; van de Werken Harmen J G; Willemen Hanneke L D M; Worm Petra; de Vos Marjon G J; Andersson Anders; Lundgren Magnus; Mazon Hortense F M; van den Heuvel Robert H H; Nilsson Peter; Salmon Laurent; de Vos Willem M; Wright Phillip C; Bernander Rolf; van der Oost John
Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment.
The Journal of biological chemistry 2006;281(37):27378-88.
2006: Joyce M Gordon; Levy Colin; Gábor Krisztina; Pop Stelian M; Biehl Benjamin D; Doukov Tzanko I; Ryter Jodi M; Mazon Hortense; Smidt Hauke; van den Heuvel Robert H H; Ragsdale Stephen W; van der Oost John; Leys David
CprK crystal structures reveal mechanism for transcriptional control of halorespiration.
The Journal of biological chemistry 2006;281(38):28318-25.
2006: Ettema Thijs J G; Brinkman Arie B; Lamers Packo P; Kornet Noor G; de Vos Willem M; van der Oost John
Molecular characterization of a conserved archaeal copper resistance (cop) gene cluster and its copper-responsive regulator in Sulfolobus solfataricus P2.
Microbiology (Reading, England) 2006;152(Pt 7):1969-79.
2006: Erauso Gaël; Stedman Kenneth M; van de Werken Harmen J G; Zillig Wolfram; van der Oost John
Two novel conjugative plasmids from a single strain of Sulfolobus.
Microbiology (Reading, England) 2006;152(Pt 7):1951-68.
2006: van de Werken Harmen J G; Verhees Corné H; Akerboom Jasper; de Vos Willem M; van der Oost John
Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus.
FEMS microbiology letters 2006;260(1):69-76.
2006: Machielsen Ronnie; van der Oost John
Production and characterization of a thermostable L-threonine dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus.
The FEBS journal 2006;273(12):2722-9.
2006: Kube Jürgen; Brokamp Christian; Machielsen Ronnie; van der Oost John; Märkl Herbert
Influence of temperature on the production of an archaeal thermoactive alcohol dehydrogenase from Pyrococcus furiosus with recombinant Escherichia coli.
Extremophiles : life under extreme conditions 2006;10(3):221-7.
2006: Berrisford John M; Hounslow Andrea M; Akerboom Jasper; Hagen Wilfred R; Brouns Stan J J; van der Oost John; Murray Iain A; Michael Blackburn G; Waltho Jonathan P; Rice David W; Baker Patrick J
Evidence supporting a cis-enediol-based mechanism for Pyrococcus furiosus phosphoglucose isomerase.
Journal of molecular biology 2006;358(5):1353-66.
2006: Gábor Krisztina; Veríssimo Carla S; Cyran Barbara C; Ter Horst Paul; Meijer Nienke P; Smidt Hauke; de Vos Willem M; van der Oost John
Characterization of CprK1, a CRP/FNR-type transcriptional regulator of halorespiration from Desulfitobacterium hafniense.
Journal of bacteriology 2006;188(7):2604-13.
2006: Brouns Stan J J; Smits Nicole; Wu Hao; Snijders Ambrosius P L; Wright Phillip C; de Vos Willem M; van der Oost John
Identification of a novel alpha-galactosidase from the hyperthermophilic archaeon Sulfolobus solfataricus.
Journal of bacteriology 2006;188(7):2392-9.
2006: Snijders Ambrosius P L; Walther Jasper; Peter Stefan; Kinnman Iris; de Vos Marjon G J; van de Werken Harmen J G; Brouns Stan J J; van der Oost John; Wright Phillip C
Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis.
Proteomics 2006;6(5):1518-29.
2006: Machielsen Ronnie; Uria Agustinus R; Kengen Servé W M; van der Oost John
Production and characterization of a thermostable alcohol dehydrogenase that belongs to the aldo-keto reductase superfamily.
Applied and environmental microbiology 2006;72(1):233-8.
2006: Thaw Paul; Sedelnikova Svetlana E; Muranova Tatyana; Wiese Sebastian; Ayora Sylvia; Alonso Juan C; Brinkman Arie B; Akerboom Jasper; van der Oost John; Rafferty John B
Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.
Nucleic acids research 2006;34(5):1439-49.
2005: Koutsopoulos Sotirios; van der Oost John; Norde Willem
Conformational studies of a hyperthermostable enzyme.
The FEBS journal 2005;272(21):5484-96.
2005: Kluskens Leon D; van Alebeek Gert-Jan W M; Walther Jasper; Voragen Alphons G J; de Vos Willem M; van der Oost John
Characterization and mode of action of an exopolygalacturonase from the hyperthermophilic bacterium Thermotoga maritima.
The FEBS journal 2005;272(21):5464-73.
2005: Ettema Thijs J G; de Vos Willem M; van der Oost John
Discovering novel biology by in silico archaeology.
Nature reviews. Microbiology 2005;3(11):859-69.
2005: Koutsopoulos Sotirios; van der Oost John; Norde Willem
Temperature-dependent structural and functional features of a hyperthermostable enzyme using elastic neutron scattering.
Proteins 2005;61(2):377-84.
2005: Ahmed Hatim; Ettema Thijs J G; Tjaden Britta; Geerling Ans C M; van der Oost John; Siebers Bettina
The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic archaea: a re-evaluation.
The Biochemical journal 2005;390(Pt 2):529-40.
2005: Gödde Carolin; Sahm Kerstin; Brouns Stan J J; Kluskens Leon D; van der Oost John; de Vos Willem M; Antranikian Garabed
Cloning and expression of islandisin, a new thermostable subtilisin from Fervidobacterium islandicum, in Escherichia coli.
Applied and environmental microbiology 2005;71(7):3951-8.
2005: Koutsopoulos Sotirios; Tjeerdsma Anne-Marie; Lieshout Johannes F T; van der Oost John; Norde Willem
In situ structure and activity studies of an enzyme adsorbed on spectroscopically undetectable particles.
Biomacromolecules 2005;6(3):1176-84.
2005: Brouns Stan J J; Wu Hao; Akerboom Jasper; Turnbull Andrew P; de Vos Willem M; van der Oost John
Engineering a selectable marker for hyperthermophiles.
The Journal of biological chemistry 2005;280(12):11422-31.
2005: Chiaraluce Roberta; Gianese Giulio; Angelaccio Sebastiana; Florio Rita; van Lieshout Johan F T; van der Oost John; Consalvi Valerio
Calcium-induced tertiary structure modifications of endo-beta-1,3-glucanase from Pyrococcus furiosus in 7.9 M guanidinium chloride.
The Biochemical journal 2005;386(Pt 3):515-24.
2005: Koutsopoulos Sotirios; van der Oost John; Norde Willem
Structural features of a hyperthermostable endo-beta-1,3-glucanase in solution and adsorbed on "invisible" particles.
Biophysical journal 2005;88(1):467-74.
2004: Ettema Thijs J G; Makarova Kira S; Jellema Gera L; Gierman Hinco J; Koonin Eugene V; Huynen Martijn A; de Vos Willem M; van der Oost John
Identification and functional verification of archaeal-type phosphoenolpyruvate carboxylase, a missing link in archaeal central carbohydrate metabolism.
Journal of bacteriology 2004;186(22):7754-62.
2004: Kessler Alexandra; Brinkman Arie B; van der Oost John; Prangishvili David
Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon sulfolobus.
Journal of bacteriology 2004;186(22):7745-53.
2004: van Lieshout J; Faijes M; Nieto J; van der Oost J; Planas A
Hydrolase and glycosynthase activity of endo-1,3-beta-glucanase from the thermophile Pyrococcus furiosus.
Archaea (Vancouver, B.C.) 2004;1(4):285-92.
2004: Berrisford John M; Akerboom Jasper; Brouns Stan; Sedelnikova Svetlana E; Turnbull Andrew P; van der Oost John; Salmon Laurent; Hardré Renaud; Murray Iain A; Blackburn G Michael; Rice David W; Baker Patrick J
The structures of inhibitor complexes of Pyrococcus furiosus phosphoglucose isomerase provide insights into substrate binding and catalysis.
Journal of molecular biology 2004;343(3):649-57.
2004: López-Contreras Ana M; Gabor Krisztina; Martens Aernout A; Renckens Bernadet A M; Claassen Pieternel A M; Van Der Oost John; De Vos Willem M
Substrate-induced production and secretion of cellulases by Clostridium acetobutylicum.
Applied and environmental microbiology 2004;70(9):5238-43.
2004: Koutsopoulos Sotiris; van der Oost John; Norde Willem
Adsorption of an endoglucanase from the hyperthermophilic Pyrococcus furiosus on hydrophobic (polystyrene) and hydrophilic (silica) surfaces increases protein heat stability.
Langmuir : the ACS journal of surfaces and colloids 2004;20(15):6401-6.
2004: Hartley Andrew; Glynn Steven E; Barynin Vladimir; Baker Patrick J; Sedelnikova Svetlana E; Verhees Corné; de Geus Daniel; van der Oost John; Timson David J; Reece Richard J; Rice David W
Substrate specificity and mechanism from the structure of Pyrococcus furiosus galactokinase.
Journal of molecular biology 2004;337(2):387-98.
2004: Kim Jeong-Sun; Kluskens Leon D; de Vos Willem M; Huber Robert; van der Oost John
Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin.
Journal of molecular biology 2004;335(3):787-97.
2003: Akerboom Jasper; Turnbull Andrew P; Hargreaves David; Fisher Martin; de Geus Daniel; Sedelnikova Svetlana E; Berrisford John M; Baker Patrick J; Verhees Corne H; van der Oost John; Rice David W
Purification, crystallization and preliminary crystallographic analysis of phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1822-3.
2003: de Geus Daniel; Hartley Andrew P; Sedelnikova Svetlana E; Glynn Steven E; Baker Patrick J; Verhees Corné H; van der Oost John; Rice David W
Cloning, purification, crystallization and preliminary crystallographic analysis of galactokinase from Pyrococcus furiosus.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 10):1819-21.
2003: Verhees Corné H; Kengen Servé W M; Tuininga Judith E; Schut Gerrit J; Adams Michael W W; De Vos Willem M; Van Der Oost John
The unique features of glycolytic pathways in Archaea.
The Biochemical journal 2003;375(Pt 2):231-46.
2003: Berrisford John M; Akerboom Jasper; Turnbull Andrew P; de Geus Daniel; Sedelnikova Svetlana E; Staton Ian; McLeod Cameron W; Verhees Corne H; van der Oost John; Rice David W; Baker Patrick J
Crystal structure of Pyrococcus furiosus phosphoglucose isomerase. Implications for substrate binding and catalysis.
The Journal of biological chemistry 2003;278(35):33290-7.
2003: Perugino Giuseppe; Trincone Antonio; Giordano Assunta; van der Oost John; Kaper Thijs; Rossi Mosè; Moracci Marco
Activity of hyperthermophilic glycosynthases is significantly enhanced at acidic pH.
Biochemistry 2003;42(28):8484-93.
2003: Kengen Servé W M; van der Oost John; de Vos Willem M
Molecular characterization of H2O2-forming NADH oxidases from Archaeoglobus fulgidus.
European journal of biochemistry / FEBS 2003;270(13):2885-94.
2003: Ettema Thijs J G; Huynen Martijn A; de Vos Willem M; van der Oost John
TRASH: a novel metal-binding domain predicted to be involved in heavy-metal sensing, trafficking and resistance.
Trends in biochemical sciences 2003;28(4):170-3.
2003: Brinkman Arie B; Ettema Thijs J G; de Vos Willem M; van der Oost John
The Lrp family of transcriptional regulators.
Molecular microbiology 2003;48(2):287-94.
2003: Cohen Georges N; Barbe Valérie; Flament Didier; Galperin Michael; Heilig Roland; Lecompte Odile; Poch Olivier; Prieur Daniel; Quérellou Joël; Ripp Raymond; Thierry Jean-Claude; Van der Oost John; Weissenbach Jean; Zivanovic Yvan; Forterre Patrick
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.
Molecular microbiology 2003;47(6):1495-512.
2003: Kluskens Leon D; van Alebeek Gert-Jan W M; Voragen Alphons G J; de Vos Willem M; van der Oost John
Molecular and biochemical characterization of the thermoactive family 1 pectate lyase from the hyperthermophilic bacterium Thermotoga maritima.
The Biochemical journal 2003;370(Pt 2):651-9.
2003: López-Contreras Ana M; Martens Aernout A; Szijarto Nora; Mooibroek Hans; Claassen Pieternel A M; van der Oost John; de Vos Willem M
Production by Clostridium acetobutylicum ATCC 824 of CelG, a cellulosomal glycoside hydrolase belonging to family 9.
Applied and environmental microbiology 2003;69(2):869-77.
2002: Chiaraluce Roberta; Van Der Oost John; Lebbink Joyce H G; Kaper Thijs; Consalvi Valerio
Persistence of tertiary structure in 7.9 M guanidinium chloride: the case of endo-beta-1,3-glucanase from Pyrococcus furiosus.
Biochemistry 2002;41(49):14624-32.
2002: Kaper Thijs; Brouns Stan J J; Geerling Ans C M; De Vos Willem M; Van der Oost John
DNA family shuffling of hyperthermostable beta-glycosidases.
The Biochemical journal 2002;368(Pt 2):461-70.
2002: Ettema Thijs J G; Brinkman Arie B; Tani Travis H; Rafferty John B; Van Der Oost John
A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes.
The Journal of biological chemistry 2002;277(40):37464-8.
2002: Ward Donald E; de Vos Willem M; van der Oost John
Molecular analysis of the role of two aromatic aminotransferases and a broad-specificity aspartate aminotransferase in the aromatic amino acid metabolism of Pyrococcus furiosus.
Archaea (Vancouver, B.C.) 2002;1(2):133-41.
2002: Brinkman Arie B; Bell Stephen D; Lebbink Robert Jan; de Vos Willem M; van der Oost John
The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability.
The Journal of biological chemistry 2002;277(33):29537-49.
2002: Verhees Corné H; Koot Denise G M; Ettema Thijs J G; Dijkema Cor; de Vos Willem M; van der Oost John
Biochemical adaptations of two sugar kinases from the hyperthermophilic archaeon Pyrococcus furiosus.
The Biochemical journal 2002;366(Pt 1):121-7.
2002: van der Oost John; Huynen Martijn A; Verhees Corné H
Molecular characterization of phosphoglycerate mutase in archaea.
FEMS microbiology letters 2002;212(1):111-20.
2002: Kluskens Leon D; Voorhorst Wilfried G B; Siezen Roland J; Schwerdtfeger Ruth M; Antranikian Garabed; van der Oost John; de Vos Willem M
Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacterium Fervidobacterium pennivorans.
Extremophiles : life under extreme conditions 2002;6(3):185-94.
2002: Verhees Corné H; Akerboom Jasper; Schiltz Emile; de Vos Willem M; van der Oost John
Molecular and biochemical characterization of a distinct type of fructose-1,6-bisphosphatase from Pyrococcus furiosus.
Journal of bacteriology 2002;184(12):3401-5.
2002: Ward Donald E; Revet Ingrid M; Nandakumar Renu; Tuttle Jon H; de Vos Willem M; van der Oost John; DiRuggiero Jocelyne
Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1.
Journal of bacteriology 2002;184(9):2561-6.
2002: Kaper Thijs; van Heusden Hester H; van Loo Bert; Vasella Andrea; van der Oost John; de Vos Willem M
Substrate specificity engineering of beta-mannosidase and beta-glucosidase from Pyrococcus by exchange of unique active site residues.
Biochemistry 2002;41(12):4147-55.
2001: Verhees C H; Tuininga J E; Kengen S W; Stams A J; van der Oost J; de Vos W M
ADP-dependent phosphofructokinases in mesophilic and thermophilic methanogenic archaea.
Journal of bacteriology 2001;183(24):7145-53.
2001: Ward D E; Donnelly C J; Mullendore M E; van der Oost J; de Vos W M; Crane E J
The NADH oxidase from Pyrococcus furiosus. Implications for the protection of anaerobic hyperthermophiles against oxidative stress.
European journal of biochemistry / FEBS 2001;268(22):5816-23.
2001: López-Contreras A M; Smidt H; van der Oost J; Claassen P A; Mooibroek H; de Vos W M
Clostridium beijerinckii cells expressing Neocallimastix patriciarum glycoside hydrolases show enhanced lichenan utilization and solvent production.
Applied and environmental microbiology 2001;67(11):5127-33.
2001: Verhees C H; Huynen M A; Ward D E; Schiltz E; de Vos W M; van der Oost J
The phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus is a unique glycolytic enzyme that belongs to the cupin superfamily.
The Journal of biological chemistry 2001;276(44):40926-32.
2001: Kengen S W; Bikker F J; Hagen W R; de Vos W M; van der Oost J
Characterization of a catalase-peroxidase from the hyperthermophilic archaeon Archaeoglobus fulgidus.
Extremophiles : life under extreme conditions 2001;5(5):323-32.
2001: Siebers B; Brinkmann H; Dörr C; Tjaden B; Lilie H; van der Oost J; Verhees C H
Archaeal fructose-1,6-bisphosphate aldolases constitute a new family of archaeal type class I aldolase.
The Journal of biological chemistry 2001;276(31):28710-8.
2001: Sedelnikova S E; Smits S H; Leonard P M; Brinkman A B; van der Oost J; Rafferty J B; Rice D W
Crystallization and quaternary structure analysis of an Lrp-like regulatory protein from the hyperthermophile Pyrococcus furiosus.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 6):886-8.
2001: van der Oost J; Voorhorst W G; Kengen S W; Geerling A C; Wittenhorst V; Gueguen Y; de Vos W M
Genetic and biochemical characterization of a short-chain alcohol dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus.
European journal of biochemistry / FEBS 2001;268(10):3062-8.
2001: Leonard P M; Smits S H; Sedelnikova S E; Brinkman A B; de Vos W M; van der Oost J; Rice D W; Rafferty J B
Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus.
The EMBO journal 2001;20(5):990-7.
2001: Bell S D; Brinkman A B; van der Oost J; Jackson S P
The archaeal TFIIEalpha homologue facilitates transcription initiation by enhancing TATA-box recognition.
EMBO reports 2001;2(2):133-8.
2001: Smidt H; van der Oost J; de Vos W M
Development of a gene cloning and inactivation system for halorespiring Desulfitobacterium dehalogenans.
Applied and environmental microbiology 2001;67(2):591-7.
2001: Kengen S W; Tuininga J E; Verhees C H; van der Oost J; Stams A J; de Vos W M
ADP-dependent glucokinase and phosphofructokinase from Pyrococcus furiosus.
Methods in enzymology 2001;331():41-53.
2001: de Vos W M; Voorhorst W G; Dijkgraaf M; Kluskens L D; Van der Oost J; Siezen R J
Purification, characterization, and molecular modeling of pyrolysin and other extracellular thermostable serine proteases from hyperthermophilic microorganisms.
Methods in enzymology 2001;330():383-93.
2001: Lebbink J H; Kaper T; Kengen S W; van der Oost J; de Vos W M
beta-Glucosidase CelB from Pyrococcus furiosus: production by Escherichia coli, purification, and in vitro evolution.
Methods in enzymology 2001;330():364-79.
2001: Kaper T; Verhees C H; Lebbink J H; van Lieshout J F; Kluskens L D; Ward D E; Kengen S W; Beerthuyzen M M; de Vos W M; van der Oost J
Characterization of beta-glycosylhydrolases from Pyrococcus furiosus.
Methods in enzymology 2001;330():329-46.
2000: Brinkman A B; Dahlke I; Tuininga J E; Lammers T; Dumay V; de Heus E; Lebbink J H; Thomm M; de Vos W M; van Der Oost J
An Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus is negatively autoregulated.
The Journal of biological chemistry 2000;275(49):38160-9.
2000: Smidt H; van Leest M; van der Oost J; de Vos W M
Transcriptional regulation of the cpr gene cluster in ortho-chlorophenol-respiring Desulfitobacterium dehalogenans.
Journal of bacteriology 2000;182(20):5683-91.
2000: López-García P; Forterre P; van der Oost J; Erauso G
Plasmid pGS5 from the hyperthermophilic archaeon Archaeoglobus profundus is negatively supercoiled.
Journal of bacteriology 2000;182(17):4998-5000.
2000: Moracci M; Cobucci Ponzano B; Trincone A; Fusco S; De Rosa M; van Der Oost J; Sensen C W; Charlebois R L; Rossi M
Identification and molecular characterization of the first alpha -xylosidase from an archaeon.
The Journal of biological chemistry 2000;275(29):22082-9.
2000: Pouwels J; Moracci M; Cobucci-Ponzano B; Perugino G; van der Oost J; Kaper T; Lebbink J H; de Vos W M; Ciaramella M; Rossi M
Activity and stability of hyperthermophilic enzymes: a comparative study on two archaeal beta-glycosidases.
Extremophiles : life under extreme conditions 2000;4(3):157-64.
2000: Kaper T; Lebbink J H; Pouwels J; Kopp J; Schulz G E; van der Oost J; de Vos W M
Comparative structural analysis and substrate specificity engineering of the hyperthermostable beta-glucosidase CelB from Pyrococcus furiosus.
Biochemistry 2000;39(17):4963-70.
2000: Ward D E; Kengen S W; van Der Oost J; de Vos W M
Purification and characterization of the alanine aminotransferase from the hyperthermophilic Archaeon pyrococcus furiosus and its role in alanine production.
Journal of bacteriology 2000;182(9):2559-66.
2000: Lebbink J H; Kaper T; Bron P; van der Oost J; de Vos W M
Improving low-temperature catalysis in the hyperthermostable Pyrococcus furiosus beta-glucosidase CelB by directed evolution.
Biochemistry 2000;39(13):3656-65.
2000: Charlebois R L; Singh R K; Chan-Weiher C C; Allard G; Chow C; Confalonieri F; Curtis B; Duguet M; Erauso G; Faguy D; Gaasterland T; Garrett R A; Gordon P; Jeffries A C; Kozera C; Kushwaha N; Lafleur E; Medina N; Peng X; Penny S L; She Q; St Jean A; van der Oost J; Young F; Zivanovic Y; Doolittle W F; Ragan M A; Sensen C W
Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2000;43(1):116-36.
2000: She Q; Confalonieri F; Zivanovic Y; Medina N; Billault A; Awayez M J; Thi-Ngoc H P; Pham B T; van der Oost J; Duguet M; Garrett R A
A BAC library and paired-PCR approach to mapping and completing the genome sequence of Sulfolobus solfataricus P2.
DNA sequence : the journal of DNA sequencing and mapping 2000;11(3-4):183-92.
1999: Smidt H; Song D; van Der Oost J; de Vos W M
Random transposition by Tn916 in Desulfitobacterium dehalogenans allows for isolation and characterization of halorespiration-deficient mutants.
Journal of bacteriology 1999;181(22):6882-8.
1999: Tuininga J E; Verhees C H; van der Oost J; Kengen S W; Stams A J; de Vos W M
Molecular and biochemical characterization of the ADP-dependent phosphofructokinase from the hyperthermophilic archaeon Pyrococcus furiosus.
The Journal of biological chemistry 1999;274(30):21023-8.
1999: van de Pas B A; Smidt H; Hagen W R; van der Oost J; Schraa G; Stams A J; de Vos W M
Purification and molecular characterization of ortho-chlorophenol reductive dehalogenase, a key enzyme of halorespiration in Desulfitobacterium dehalogenans.
The Journal of biological chemistry 1999;274(29):20287-92.
1999: Voorhorst W G; Gueguen Y; Geerling A C; Schut G; Dahlke I; Thomm M; van der Oost J; de Vos W M
Transcriptional regulation in the hyperthermophilic archaeon Pyrococcus furiosus: coordinated expression of divergently oriented genes in response to beta-linked glucose polymers.
Journal of bacteriology 1999;181(12):3777-83.
1999: Lebbink J H; Knapp S; van der Oost J; Rice D; Ladenstein R; de Vos W M
Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. II: construction of a 16-residue ion-pair network at the subunit interface.
Journal of molecular biology 1999;289(2):357-69.
1999: Napoli A; van der Oost J; Sensen C W; Charlebois R L; Rossi M; Ciaramella M
An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter.
Journal of bacteriology 1999;181(5):1474-80.
1998: van der Oost J; Schut G; Kengen S W; Hagen W R; Thomm M; de Vos W M
The ferredoxin-dependent conversion of glyceraldehyde-3-phosphate in the hyperthermophilic archaeon Pyrococcus furiosus represents a novel site of glycolytic regulation.
The Journal of biological chemistry 1998;273(43):28149-54.
1998: Sensen C W; Charlebois R L; Chow C; Clausen I G; Curtis B; Doolittle W F; Duguet M; Erauso G; Gaasterland T; Garrett R A; Gordon P; de Jong I H; Jeffries A C; Kozera C; Medina N; De Moors A; van der Oost J; Phan H; Ragan M A; Schenk M E; She Q; Singh R K; Tolstrup N
Completing the sequence of the Sulfolobus solfataricus P2 genome.
Extremophiles : life under extreme conditions 1998;2(3):305-12.
1998: de Vos W M; Kengen S W; Voorhorst W G; van der Oost J
Sugar utilization and its control in hyperthermophiles.
Extremophiles : life under extreme conditions 1998;2(3):201-5.
1998: Lebbink J H; Knapp S; van der Oost J; Rice D; Ladenstein R; de Vos W M
Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. I. Introduction of a six-residue ion-pair network in the hinge region.
Journal of molecular biology 1998;280(2):287-96.
1998: van der Oost J; Ciaramella M; Moracci M; Pisani F M; Rossi M; de Vos W M
Molecular biology of hyperthermophilic Archaea.
Advances in biochemical engineering/biotechnology 1998;61():87-115.
1997: Gueguen Y; Voorhorst W G; van der Oost J; de Vos W M
Molecular and biochemical characterization of an endo-beta-1,3- glucanase of the hyperthermophilic archaeon Pyrococcus furiosus.
The Journal of biological chemistry 1997;272(50):31258-64.

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