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Johan van Hylckama Vlieg

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Sequence Analysis, DNA

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Publications

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Anne Vrieze; Erwin G Zoetendal; Raish Oozeer; Jarkko Salojärvi; Mireille J Serlie; Erik S Stroes; Johan E T van Hylckama Vlieg; Els Van Nood; Mariette T Ackermans; Joep F W M Bartelsman; Vincent Bloks; Geesje M Dallinga-Thie; Willem M de Vos; Muriel Derrien; Anne Druesne; Albert K Groen; Hans G H J Heilig; Joost B L Hoekstra; Frits Holleman; Ruud S Kootte; Max Nieuwdorp
Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.
Christian Chervaux; Gerard Denariaz; Christine Grimaldi; Sophie Legrain-Raspaud; Benoit Quinquis; Alexander Bolotin; Johan E T van Hylckama Vlieg; Tamara Smokvina
Genome sequence of the probiotic strain Bifidobacterium animalis subsp. lactis CNCM I-2494.
Frank A M de Bok; Patrick W M Janssen; Arjen Lommen; Sander Sieuwerts; Johan E T van Hylckama Vlieg; Jumamurat R Bayjanov; Douwe Molenaar
Volatile compound fingerprinting of mixed-culture fermentations.

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All Publications

2012: Anne Vrieze; Erwin G Zoetendal; Raish Oozeer; Jarkko Salojärvi; Mireille J Serlie; Erik S Stroes; Johan E T van Hylckama Vlieg; Els Van Nood; Mariette T Ackermans; Joep F W M Bartelsman; Vincent Bloks; Geesje M Dallinga-Thie; Willem M de Vos; Muriel Derrien; Anne Druesne; Albert K Groen; Hans G H J Heilig; Joost B L Hoekstra; Frits Holleman; Ruud S Kootte; Max Nieuwdorp
Transfer of intestinal microbiota from lean donors increases insulin sensitivity in individuals with metabolic syndrome.
Gastroenterology 2012;143(4):913-6.e7.
2011: Christian Chervaux; Gerard Denariaz; Christine Grimaldi; Sophie Legrain-Raspaud; Benoit Quinquis; Alexander Bolotin; Johan E T van Hylckama Vlieg; Tamara Smokvina
Genome sequence of the probiotic strain Bifidobacterium animalis subsp. lactis CNCM I-2494.
Journal of bacteriology 2011;193(19):5560-1.
2011: Frank A M de Bok; Patrick W M Janssen; Arjen Lommen; Sander Sieuwerts; Johan E T van Hylckama Vlieg; Jumamurat R Bayjanov; Douwe Molenaar
Volatile compound fingerprinting of mixed-culture fermentations.
Applied and environmental microbiology 2011;77(17):6233-9.
2011: Oylum Erkus Kütahya; Jan Rademaker; Eddy J. Smid; Marjo Starrenburg; Johan E T van Hylckama Vlieg; Corné Klaassen; Michiel Kleerebezem
High-resolution amplified fragment length polymorphism typing of Lactococcus lactis strains enables identification of genetic markers for subspecies-related phenotypes.
Applied and environmental microbiology 2011;77(15):5192-8.
2011: Ronnie Machielsen; Roland Siezen; Sacha A F T van Hijum; Johan E T van Hylckama Vlieg
Molecular description and industrial potential of Tn6098 conjugative transfer conferring alpha-galactoside metabolism in Lactococcus lactis.
Applied and environmental microbiology 2011;77(2):555-63.
2010: Sander Sieuwerts; Douwe Molenaar; Sacha A F T van Hijum; Marke Beerthuyzen; Marc J A Stevens; Patrick W M Janssen; Colin J Ingham; Frank A M de Bok; Willem M de Vos; Johan E T van Hylckama Vlieg
Mixed-culture transcriptome analysis reveals the molecular basis of mixed-culture growth in Streptococcus thermophilus and Lactobacillus bulgaricus.
Applied and environmental microbiology 2010;76(23):7775-84.
2010: patrick veiga; Carey Ann Gallini; Chloé Beal; Monia Michaud; Mary L Delaney; Andrea DuBois; Artem Khlebnikov; Johan E T van Hylckama Vlieg; Shivesh Punit; Jonathan N Glickman; Andrew B Onderdonk; Laurie H Glimcher; Wendy S Garrett
Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(42):18132-7.
2010: Roland Siezen; Jumamurat Bayjanov; Bernadet Renckens; Michiel Wels; Sacha A F T van Hijum; Douwe Molenaar; Johan E T van Hylckama Vlieg
Complete genome sequence of Lactococcus lactis subsp. lactis KF147, a plant-associated lactic acid bacterium.
Journal of bacteriology 2010;192(10):2649-50.
2010: Herwig Bachmann; Leonie de Wilt; Michiel Kleerebezem; Johan E T van Hylckama Vlieg
Time-resolved genetic responses of Lactococcus lactis to a dairy environment.
Environmental microbiology 2010;12(5):1260-70.
2010: Ronnie Machielsen; Ingrid J van Alen-Boerrigter; Lucy A Koole; Roger S Bongers; Michiel Kleerebezem; Johan E T van Hylckama Vlieg
Indigenous and environmental modulation of frequencies of mutation in Lactobacillus plantarum.
Applied and environmental microbiology 2010;76(5):1587-95.
2010: Roland Siezen; Vesela A Tzeneva; Anna Castioni; Michiel Wels; Hoa T K Phan; Jan Rademaker; Marjo J C Starrenburg; Michiel Kleerebezem; Douwe Molenaar; Johan E T van Hylckama Vlieg
Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches.
Environmental microbiology 2010;12(3):758-73.
2009: Herwig Bachmann; Marjo J C Starrenburg; Annereinou Dijkstra; Douwe Molenaar; Michiel Kleerebezem; Jan Rademaker; Johan E T van Hylckama Vlieg
Regulatory phenotyping reveals important diversity within the species Lactococcus lactis.
Applied and environmental microbiology 2009;75(17):5687-94.
2009: Jumamurat R Bayjanov; Michiel Wels; Marjo Starrenburg; Johan E T van Hylckama Vlieg; Roland Siezen; Douwe Molenaar
PanCGH: a genotype-calling algorithm for pangenome CGH data.
Bioinformatics (Oxford, England) 2009;25(3):309-14.
2009: Emilie Chambellon; Liesbeth Rijnen; Frédérique Lorquet; Christophe Gitton; Johan E T van Hylckama Vlieg; Jeroen A Wouters; Mireille Yvon
The D-2-hydroxyacid dehydrogenase incorrectly annotated PanE is the sole reduction system for branched-chain 2-keto acids in Lactococcus lactis.
Journal of bacteriology 2009;191(3):873-81.
2008: Colin J Ingham; Johan E T van Hylckama Vlieg
MEMS and the microbe.
Lab on a chip 2008;8(10):1604-16.
2008: Sander Sieuwerts; Frank A M de Bok; Jeroen Hugenholtz; Johan E T van Hylckama Vlieg
Unraveling microbial interactions in food fermentations: from classical to genomics approaches.
Applied and environmental microbiology 2008;74(16):4997-5007.
2008: Herwig Bachmann; Michiel Kleerebezem; Johan E T van Hylckama Vlieg
High-throughput identification and validation of in situ-expressed genes of Lactococcus lactis.
Applied and environmental microbiology 2008;74(15):4727-36.
2008: Roland Siezen; Marjo Starrenburg; Jos Boekhorst; Bernadet Renckens; Douwe Molenaar; Johan E T van Hylckama Vlieg
Genome-scale genotype-phenotype matching of two Lactococcus lactis isolates from plants identifies mechanisms of adaptation to the plant niche.
Applied and environmental microbiology 2008;74(2):424-36.
2007: Colin J Ingham; Ad Sprenkels; Johan Bomer; Douwe Molenaar; Albert van den Berg; Johan E T van Hylckama Vlieg; WILLEM DE VOS
The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(46):18217-22.
2007: Jan Rademaker; Hélène Herbet; Marjo Starrenburg; Sabri M Naser; Dirk Gevers; William J Kelly; Jeroen Hugenholtz; Jean Swings; Johan E T van Hylckama Vlieg
Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting.
Applied and environmental microbiology 2007;73(22):7128-37.
2007: Giovanna E Felis; Douwe Molenaar; Franco Dellaglio; Johan E T van Hylckama Vlieg
Dichotomy in post-genomic microbiology.
Nature biotechnology 2007;25(8):848-9.
2007: Heidy M W den Besten; Colin J Ingham; Johan E T van Hylckama Vlieg; Marke M Beerthuyzen; Marcel H Zwietering; Tjakko Abee
Quantitative analysis of population heterogeneity of the adaptive salt stress response and growth capacity of Bacillus cereus ATCC 14579.
Applied and environmental microbiology 2007;73(15):4797-804.
2007: Herwig Bachmann; Filipe Santos; Michiel Kleerebezem; Johan E T van Hylckama Vlieg
Luciferase detection during stationary phase in Lactococcus lactis.
Applied and environmental microbiology 2007;73(14):4704-6.
2007: Igor Hernández; Douwe Molenaar; Jules Beekwilder; Harro J Bouwmeester; Johan E T van Hylckama Vlieg
Expression of plant flavor genes in Lactococcus lactis.
Applied and environmental microbiology 2007;73(5):1544-52.
2006: Johan E T van Hylckama Vlieg; Jan Rademaker; Herwig Bachmann; Douwe Molenaar; William J Kelly; Roland Siezen
Natural diversity and adaptive responses of Lactococcus lactis.
Current opinion in biotechnology 2006;17(2):183-90.
2005: Bart A Smit; Johan E T van Hylckama Vlieg; Wim J M Engels; Laura Meijer; Jan T M Wouters; Gerrit Smit
Identification, cloning, and characterization of a Lactococcus lactis branched-chain alpha-keto acid decarboxylase involved in flavor formation.
Applied and environmental microbiology 2005;71(1):303-11.
2004: Bart A Smit; Wim J M Engels; J Bruinsma; Johan E T van Hylckama Vlieg; Jan T M Wouters; Gerrit Smit
Development of a high throughput screening method to test flavour-forming capabilities of anaerobic micro-organisms.
Journal of applied microbiology 2004;97(2):306-13.