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Bas van Steensel

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TOP 3
Carolyn A de Graaf; Bas van Steensel
Chromatin organization: form to function.
Jop Kind; Leisha D Nolen; Havva Ortabozkoyun; Ludo Pagie; Mario Amendola; Wendy A Bickmore; Shelagh Boyle; Sandra S de Vries; Hans Janssen; Bas van Steensel
Single-cell dynamics of genome-nuclear lamina interactions.
Joke G van Bemmel; F van Leeuwen; Tibor van Welsem; Marcel de Haas; Guillaume J Filion; Arantxa Rosado; Wendy Talhout; Bas van Steensel
A network model of the molecular organization of chromatin in Drosophila.

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All Publications

2013: Carolyn A de Graaf; Bas van Steensel
Chromatin organization: form to function.
Current opinion in genetics & development 2013;23(2):185-90.
2013: Jop Kind; Leisha D Nolen; Havva Ortabozkoyun; Ludo Pagie; Mario Amendola; Wendy A Bickmore; Shelagh Boyle; Sandra S de Vries; Hans Janssen; Bas van Steensel
Single-cell dynamics of genome-nuclear lamina interactions.
Cell 2013;153(1):178-92.
2013: Joke G van Bemmel; F van Leeuwen; Tibor van Welsem; Marcel de Haas; Guillaume J Filion; Arantxa Rosado; Wendy Talhout; Bas van Steensel
A network model of the molecular organization of chromatin in Drosophila.
Molecular cell 2013;49(4):759-71.
2013: Wouter Meuleman; Ludo Pagie; Daniel Peric-Hupkes; Marcel Reinders; Jean-Bernard Beaudry; Manolis Kellis; Jop Kind; Lodewyk Wessels; Bas van Steensel
Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence.
Genome research 2013;23(2):270-80.
2012: Nard Kubben; Wouter Meuleman; Bas van Steensel; Jan Willem Voncken; Michiel Adriaens; Tom Misteli
Mapping of lamin A- and progerin-interacting genome regions.
Chromosoma 2012;121(5):447-64.
2012: Henri G A M van Luenen; Bas van Steensel; Arno Velds; Carol Farris; Paul-Andre Genest; Andrew Haydock; Tatjana Heidebrecht; Sabrina Jan; Ron Kerkhoven; Peter J Myler; Marja Nieuwland; Ludo Pagie; Anastassis Perraks; Gowthaman Ramasamy; Pankaj Tripathi; Saara Vainio; Piet Borst
Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.
Cell 2012;150(5):909-21.
2012: Alexey V Pindyurin; Bas van Steensel
Hox in space: gene cluster regulation linked to folding of chromatin.
Nucleus (Austin, Tex.) 2012;3(2):118-22.
2012: Babett Steglich; Bas van Steensel; Guillaume J Filion; Karl Ekwall
The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe.
Nucleus (Austin, Tex.) 2012;3(1):77-87.
2011: Bas van Steensel
Chromatin: constructing the big picture.
The EMBO journal 2011;30(10):1885-95.
2011: Bas Tolhuis; Marleen Blom; Ron Kerkhoven; Ludo Pagie; Hans Teunissen; Marja Nieuwland; Marieke Simonis; Wouter de Laat; Maarten van Lohuizen; Bas van Steensel
Interactions among Polycomb domains are guided by chromosome architecture.
PLoS genetics 2011;7(3):e1001343.
2010: Andrea Pauli; Joke G van Bemmel; Raquel A Oliveira; Takehiko Itoh; Katsuhiko Shirahige; Bas van Steensel; Kim Nasmyth
A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands.
Current biology : CB 2010;20(20):1787-98.
2010: Guillaume J Filion; Joke G van Bemmel; Ulrich Braunschweig; Wendy Talhout; Jop Kind; Lucas D Ward; Wim Brugman; Inês J de Castro; Ron Kerkhoven; Harmen J Bussemaker; Bas van Steensel
Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.
Cell 2010;143(2):212-24.
2010: Jop Kind; Bas van Steensel
Genome-nuclear lamina interactions and gene regulation.
Current opinion in cell biology 2010;22(3):320-5.
2010: Daan Peric-Hupkes; Wouter Meuleman; Ludo Pagie; Sophia W M Bruggeman; Irina Solovei; Wim Brugman; Stefan Gräf; Paul Flicek; Ron Kerkhoven; Maarten van Lohuizen; Marcel J T Reinders; Lodewyk Wessels; Bas van Steensel
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation.
Molecular cell 2010;38(4):603-13.
2010: Bas van Steensel; Ulrich Braunschweig; Guillaume J Filion; Menzies Chen; Joke G van Bemmel; Trey Ideker
Bayesian network analysis of targeting interactions in chromatin.
Genome research 2010;20(2):190-200.
2010: Daniel Peric-Hupkes; Bas van Steensel
Role of the nuclear lamina in genome organization and gene expression.
Cold Spring Harbor symposia on quantitative biology 2010;75():517-24.
2010: Joke G van Bemmel; Ludo Pagie; Ulrich Braunschweig; Wim Brugman; Wouter Meuleman; Ron Kerkhoven; Bas van Steensel
The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome.
PloS one 2010;5(11):e15013.
2009: Ulrich Braunschweig; Greg J Hogan; Ludo Pagie; Bas van Steensel
Histone H1 binding is inhibited by histone variant H3.3.
The EMBO journal 2009;28(23):3635-45.
2009: Elzo de Wit; Bas van Steensel
Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies.
Chromosoma 2009;118(1):25-36.
2009: Maartje J Vogel; Ludo Pagie; Wendy Talhout; Marja Nieuwland; Ron Kerkhoven; Bas van Steensel
High-resolution mapping of heterochromatin redistribution in a Drosophila position-effect variegation model.
Epigenetics & chromatin 2009;2(1):1.
2008: Lars Guelen; Ludo Pagie; Emilie Brasset; Wouter Meuleman; Marius B Faza; Wendy Talhout; Bert H Eussen; Annelies de Klein; Lodewyk F A Wessels; Wouter de Laat; Bas van Steensel
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions.
Nature 2008;453(7197):948-51.
2008: Daniel Peric-Hupkes; Bas van Steensel
Linking cohesin to gene regulation.
Cell 2008;132(6):925-8.
2008: Elzo de Wit; Ulrich Braunschweig; Frauke Greil; Harmen J Bussemaker; Bas van Steensel
Global chromatin domain organization of the Drosophila genome.
PLoS genetics 2008;4(3):e1000045.
2007: Alexey V Pindyurin; Celine Moorman; Elzo de Wit; Stepan N Belyakin; Elena S Belyaeva; George Christophides; Fotis C Kafatos; Bas van Steensel; Igor F Zhimulev
SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila.
Journal of cell science 2007;120(Pt 14):2344-51.
2007: Elzo de Wit; Frauke Greil; Bas van Steensel
High-resolution mapping reveals links of HP1 with active and inactive chromatin components.
PLoS genetics 2007;3(3):e38.
2007: Frauke Greil; Elzo de Wit; Harmen J Bussemaker; Bas van Steensel
HP1 controls genomic targeting of four novel heterochromatin proteins in Drosophila.
The EMBO journal 2007;26(3):741-51.
2007: Maartje J Vogel; Daniel Peric-Hupkes; Bas van Steensel
Detection of in vivo protein-DNA interactions using DamID in mammalian cells.
Nature protocols 2007;2(6):1467-78.
2006: Semil P Choksi; Tony D Southall; Torsten Bossing; Karin Edoff; Elzo de Wit; Bettina E Fischer; Bas van Steensel; Gos Micklem; Andrea H Brand
Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells.
Developmental cell 2006;11(6):775-89.
2006: Maartje J Vogel; Lars Guelen; Elzo de Wit; Daniel Peric-Hupkes; Martin Lodén; Wendy Talhout; Marike Feenstra; Ben Abbas; Anne-Kathrin Classen; Bas van Steensel
Human heterochromatin proteins form large domains containing KRAB-ZNF genes.
Genome research 2006;16(12):1493-504.
2006: Marieke Simonis; Petra Klous; Erik Splinter; Yuri Moshkin; Rob Willemsen; Elzo de Wit; Bas van Steensel; Wouter de Laat
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).
Nature genetics 2006;38(11):1348-54.
2006: Helen Pickersgill; Bernike Kalverda; Elzo de Wit; Wendy Talhout; Maarten Fornerod; Bas van Steensel
Characterization of the Drosophila melanogaster genome at the nuclear lamina.
Nature genetics 2006;38(9):1005-14.
2006: Celine Moorman; Ling V Sun; Junbai Wang; Elzo de Wit; Wendy Talhout; Lucas D Ward; Frauke Greil; Xiang-Jun Lu; Kevin P White; Harmen J Bussemaker; Bas van Steensel
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(32):12027-32.
2006: Bas Tolhuis; Elzo de Wit; Inhua Muijrers; Hans Teunissen; Wendy Talhout; Bas van Steensel; Maarten van Lohuizen
Genome-wide profiling of PRC1 and PRC2 Polycomb chromatin binding in Drosophila melanogaster.
Nature genetics 2006;38(6):694-9.
2006: Gregor Gilfillan; Tobias Straub; Elzo de Wit; Frauke Greil; Rosemarie Lamm; Bas van Steensel; Peter B Becker
Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex.
Genes & development 2006;20(7):858-70.
2006: Frauke Greil; Celine Moorman; Bas van Steensel
DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase.
Methods in enzymology 2006;410():342-59.
2005: Elzo de Wit; Frauke Greil; Bas van Steensel
Genome-wide HP1 binding in Drosophila: developmental plasticity and genomic targeting signals.
Genome research 2005;15(9):1265-73.
2005: Bas van Steensel
Mapping of genetic and epigenetic regulatory networks using microarrays.
Nature genetics 2005;37 Suppl():S18-24.
2005: Martin Lodén; Bas van Steensel
Whole-genome views of chromatin structure.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2005;13(3):289-98.
2003: Frauke Greil; Ineke Van Der Kraan; Jeffrey Delrow; James F Smothers; Elzo de Wit; Harmen J Bussemaker; Roel Van Driel; Steven Henikoff; Bas van Steensel
Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location.
Genes & development 2003;17(22):2825-38.
2003: Ling V Sun; Liang Chen; Frauke Greil; Nicolas Negre; Tong-Ruei Li; Giacomo Cavalli; Hongyu Zhao; Bas van Steensel; Kevin P White
Protein-DNA interaction mapping using genomic tiling path microarrays in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(16):9428-33.
2003: Amir Orian; Bas van Steensel; Jeffrey Delrow; Harmen J Bussemaker; Ling Li; Tomoyuki Sawado; Eleanor Williams; Lenora W M Loo; Shaun M Cowley; Cynthia Yost; Sarah Pierce; Bruce A Edgar; Susan M Parkhurst; Robert N Eisenman
Genomic binding by the Drosophila Myc, Max, Mad/Mnt transcription factor network.
Genes & development 2003;17(9):1101-14.
2003: Bas van Steensel; Jeffrey Delrow; Harmen J Bussemaker
Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA binding.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(5):2580-5.
2002: Dirk Schübeler; d scalzo; Charles Kooperberg; Bas van Steensel; Jeffrey Delrow; Mark Groudine
Genome-wide DNA replication profile for Drosophila melanogaster: a link between transcription and replication timing.
Nature genetics 2002;32(3):438-42.
2002: Rachel Tompa; Claire M McCallum; Jeffrey Delrow; Jorja G Henikoff; Bas van Steensel; Steven Henikoff
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3.
Current biology : CB 2002;12(1):65-8.
2001: Bas van Steensel; Jeffrey Delrow; Steven Henikoff
Chromatin profiling using targeted DNA adenine methyltransferase.
Nature genetics 2001;27(3):304-8.
2000: Bas van Steensel; Steven Henikoff
Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase.
Nature biotechnology 2000;18(4):424-8.
2000: Steven Henikoff; Kami Ahmad; J S Platero; Bas van Steensel
Heterochromatic deposition of centromeric histone H3-like proteins.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(2):716-21.