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Ivo van Stokkum

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Tilo Mathes; Manuela Stierl; Ivo H M van Stokkum; John T M Kennis
Redox modulation of flavin and tyrosine determines photoinduced proton-coupled electron transfer and photoactivation of BLUF photoreceptors.
Bart van Oort; Marie Louise Groot; Mirelle J T ter Veer; Ivo H M van Stokkum
Excited state proton transfer in strongly enhanced GFP (sGFP2).
Lijin Tian; Michal Gwizdala; Diana Kirilovsky; Rob B M Koehorst; Ivo H M van Stokkum; Herbert van Amerongen
Picosecond kinetics of light harvesting and photoprotective quenching in wild-type and mutant phycobilisomes isolated from the cyanobacterium Synechocystis PCC 6803.

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All Publications

2012: Tilo Mathes; Manuela Stierl; Ivo H M van Stokkum; John T M Kennis
Redox modulation of flavin and tyrosine determines photoinduced proton-coupled electron transfer and photoactivation of BLUF photoreceptors.
The Journal of biological chemistry 2012;287(38):31725-38.
2012: Bart van Oort; Marie Louise Groot; Mirelle J T ter Veer; Ivo H M van Stokkum
Excited state proton transfer in strongly enhanced GFP (sGFP2).
Physical chemistry chemical physics : PCCP 2012;14(25):8852-8.
2012: Lijin Tian; Michal Gwizdala; Diana Kirilovsky; Rob B M Koehorst; Ivo H M van Stokkum; Herbert van Amerongen
Picosecond kinetics of light harvesting and photoprotective quenching in wild-type and mutant phycobilisomes isolated from the cyanobacterium Synechocystis PCC 6803.
Biophysical journal 2012;102(7):1692-700.
2012: S P Laptenok; Bart van Oort; Ivo H M van Stokkum; A J W G Visser; J W Borst; Herbert van Amerongen
Disentangling picosecond events that complicate the quantitative use of the calcium sensor YC3.60.
The journal of physical chemistry. B 2012;116(9):3013-20.
2012: Rudi Berera; Michal Gwizdala; Diana Kirilovsky; Ivo H M van Stokkum; Adjélé Wilson; Rienk van Grondelle
The photophysics of the orange carotenoid protein, a light-powered molecular switch.
The journal of physical chemistry. B 2012;116(8):2568-74.
2011: Lijin Tian; Aniek Jongerius; Diana Kirilovsky; Rob B M Koehorst; Ivo H M van Stokkum; Herbert van Amerongen
Site, rate, and mechanism of photoprotective quenching in cyanobacteria.
Journal of the American Chemical Society 2011;133(45):18304-11.
2011: Mariangela Di Donato; Klaas J Hellingwerf; John T M Kennis; Thomas Cohen Stuart; Rienk van Grondelle; Ivo H M van Stokkum; Luuk J G W van Wilderen; Marie Louise Groot
Proton transfer events in GFP.
Physical chemistry chemical physics : PCCP 2011;13(36):16295-305.
2011: Alessandro Marin; Gregory D Scholes; Paul M G Curmi; Alexander B Doust; Ivo H M van Stokkum; Krystyna E Wilk; Rienk van Grondelle
Flow of excitation energy in the cryptophyte light-harvesting antenna phycocyanin 645.
Biophysical journal 2011;101(4):1004-13.
2011: K C Toh; Ivo H M van Stokkum; Keith Moffat; Emina A Stojković; John T M Kennis
Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs.
Physical chemistry chemical physics : PCCP 2011;13(25):11985-97.
2011: Tilo Mathes; Ivo H M van Stokkum; Cosimo Bonetti; Peter Hegemann; John T M Kennis
The hydrogen-bond switch reaction of the Blrb Bluf domain of Rhodobacter sphaeroides.
The journal of physical chemistry. B 2011;115(24):7963-71.
2011: Alessandro Marin; Francesca Passarini; Ivo H M van Stokkum; Rienk van Grondelle; Roberta Croce
Minor complexes at work: light-harvesting by carotenoids in the photosystem II antenna complexes CP24 and CP26.
Biophysical journal 2011;100(11):2829-38.
2011: Alisa B Rupenyan; Jocelyne Vreede; Ivo H M van Stokkum; Marijke Hospes; John T M Kennis; Klaas J Hellingwerf; Marie Louise Groot
Proline 68 enhances photoisomerization yield in photoactive yellow protein.
The journal of physical chemistry. B 2011;115(20):6668-77.
2011: Sergey P Laptenok; Nina V Visser; Ruchira Engel; Adrie Westphal; Arie van Hoek; Carlo P M van Mierlo; Ivo H M van Stokkum; Herbert van Amerongen; Antonie J W G Visser
A general approach for detecting folding intermediates from steady-state and time-resolved fluorescence of single-tryptophan-containing proteins.
Biochemistry 2011;50(17):3441-50.
2011: Ivo H M van Stokkum; Magdalena Gauden; Sean Crosson; Rienk van Grondelle; John Keith Moffat; John T M Kennis
The primary photophysics of the Avena sativa phototropin 1 LOV2 domain observed with time-resolved emission spectroscopy.
Photochemistry and photobiology 2011;87(3):534-41.
2011: C D van der Weij-de Wit; Jan P Dekker; Rienk van Grondelle; Ivo H M van Stokkum
Charge separation is virtually irreversible in photosystem II core complexes with oxidized primary quinone acceptor.
The journal of physical chemistry. A 2011;115(16):3947-56.
2011: Xiyi Chen; Delmar S Larsen; Stephen E Bradforth; Ivo H M van Stokkum
Broadband spectral probing revealing ultrafast photochemical branching after ultraviolet excitation of the aqueous phenolate anion.
The journal of physical chemistry. A 2011;115(16):3807-19.
2011: K C Toh; Ivo H M van Stokkum; Marie Louise Groot; Keith Moffat; Alisa B Rupenyan; Marian Salumbides; Emina A Stojković; John T M Kennis
Primary reactions of bacteriophytochrome observed with ultrafast mid-infrared spectroscopy.
The journal of physical chemistry. A 2011;115(16):3778-86.
2011: Olga A Sytina; Ivo H M van Stokkum; Rienk van Grondelle; Marie Louise Groot
Single and multi-exciton dynamics in aqueous protochlorophyllide aggregates.
The journal of physical chemistry. A 2011;115(16):3936-46.
2011: Elisabet Romero; Ivo H M van Stokkum; Jan P Dekker; Rienk van Grondelle
Ultrafast carotenoid band shifts correlated with ChlZ excited states in the photosystem II reaction center: are the carotenoids involved in energy transfer?
Physical chemistry chemical physics : PCCP 2011;13(13):5573-5.
2011: Emilie Wientjes; Ivo H M van Stokkum; Herbert van Amerongen; Roberta Croce
Excitation-energy transfer dynamics of higher plant photosystem I light-harvesting complexes.
Biophysical journal 2011;100(5):1372-80.
2011: Mariangela Di Donato; Andreas D Stahl; Ivo H M van Stokkum; Rienk van Grondelle; Marie Louise Groot
Cofactors involved in light-driven charge separation in photosystem I identified by subpicosecond infrared spectroscopy.
Biochemistry 2011;50(4):480-90.
2010: Cosimo Bonetti; Maxime T A Alexandre; Ivo H M van Stokkum; Roger G Hiller; Marie Louise Groot; Rienk van Grondelle; John T M Kennis
Identification of excited-state energy transfer and relaxation pathways in the peridinin-chlorophyll complex: an ultrafast mid-infrared study.
Physical chemistry chemical physics : PCCP 2010;12(32):9256-66.
2010: Sergey P Laptenok; Jan Willem Borst; Katharine M Mullen; Ivo H M van Stokkum; Antonie J W G Visser; Herbert van Amerongen
Global analysis of Förster resonance energy transfer in live cells measured by fluorescence lifetime imaging microscopy exploiting the rise time of acceptor fluorescence.
Physical chemistry chemical physics : PCCP 2010;12(27):7593-602.
2010: Elisabet Romero; Ivo H M van Stokkum; Vladimir I Novoderezhkin; Jan P Dekker; Rienk van Grondelle
Two different charge separation pathways in photosystem II.
Biochemistry 2010;49(20):4300-7.
2010: K C Toh; Emina A Stojkovic; Ivo H M van Stokkum; John Keith Moffat; John T M Kennis
Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(20):9170-5.
2010: Olga A Sytina; Ivo H M van Stokkum; Derren J Heyes; C Neil Hunter; Rienk van Grondelle; Marie Louise Groot
Protochlorophyllide excited-state dynamics in organic solvents studied by time-resolved visible and mid-infrared spectroscopy.
The journal of physical chemistry. B 2010;114(12):4335-44.
2010: Joost de Klerk; Ivo H M van Stokkum; Anna Szemik-Hojniak; Irena Deperasińska; Cees Gooijer; Hong Zhang; Wybren Jan Buma; Freek Ariese
Excited state processes of 2-butylamino-6-methyl-4-nitropyridine N-oxide in nonpolar solvents. A transient absorption spectroscopy study.
The journal of physical chemistry. A 2010;114(12):4045-50.
2010: Peter D Zoon; Ivo H M van Stokkum; Manuel Parent; Olivier Mongin; Mireille Blanchard-Desce; Albert M Brouwer
Fast photo-processes in triazole-based push-pull systems.
Physical chemistry chemical physics : PCCP 2010;12(11):2706-15.
2010: Natalia P Pawlowicz; Ivo H M van Stokkum; Jacques Breton; Rienk van Grondelle; Michael R Jones
An investigation of slow charge separation in a tyrosine M210 to tryptophan mutant of the Rhodobacter sphaeroides reaction center by femtosecond mid-infrared spectroscopy.
Physical chemistry chemical physics : PCCP 2010;12(11):2693-705.
2010: Rob B M Koehorst; Sergey Laptenok; Bart van Oort; Arie van Hoek; Ruud B Spruijt; Ivo H M van Stokkum; Herbert van Amerongen; Marcus A Hemminga
Profiling of dynamics in protein-lipid-water systems: a time-resolved fluorescence study of a model membrane protein with the label BADAN at specific membrane depths.
European biophysics journal : EBJ 2010;39(4):647-56.
2009: Alisa Rupenyan; Ivo H M van Stokkum; Jos C Arents; Rienk van Grondelle; Klaas J Hellingwerf; Marie Louise Groot
Reaction pathways of photoexcited retinal in proteorhodopsin studied by pump-dump-probe spectroscopy.
The journal of physical chemistry. B 2009;113(50):16251-6.
2009: Cosimo Bonetti; Manuela Stierl; Tilo Mathes; Ivo H M van Stokkum; Katharine M Mullen; Thomas A Cohen-Stuart; Rienk van Grondelle; Peter Hegemann; John T M Kennis
The role of key amino acids in the photoactivation pathway of the Synechocystis Slr1694 BLUF domain.
Biochemistry 2009;48(48):11458-69.
2009: Natalia P Pawlowicz; Ivo H M van Stokkum; Jacques Breton; Rienk van Grondelle; Michael R Jones
Identification of the intermediate charge-separated state P+betaL- in a leucine M214 to histidine mutant of the Rhodobacter sphaeroides reaction center using femtosecond midinfrared spectroscopy.
Biophysical journal 2009;96(12):4956-65.
2009: Luuk J G W van Wilderen; Jason M Key; Ivo H M van Stokkum; Rienk van Grondelle; Marie Louise Groot
Dynamics of carbon monoxide photodissociation in Bradyrhizobium japonicum FixL probed by picosecond midinfrared spectroscopy.
The journal of physical chemistry. B 2009;113(11):3292-7.
2009: Rudi Berera; Ivo H M van Stokkum; Sandrine D'Haene; John T M Kennis; Rienk van Grondelle; Jan P Dekker
A mechanism of energy dissipation in cyanobacteria.
Biophysical journal 2009;96(6):2261-7.
2009: Elisabet Romero; Milena Mozzo; Ivo H M van Stokkum; Jan P Dekker; Rienk van Grondelle; Roberta Croce
The origin of the low-energy form of photosystem I light-harvesting complex Lhca4: mixing of the lowest exciton with a charge-transfer state.
Biophysical journal 2009;96(5):L35-7.
2008: Cosimo Bonetti; Tilo Mathes; Ivo H M van Stokkum; Katharine M Mullen; Marie Louise Groot; Rienk van Grondelle; Peter Hegemann; John T M Kennis
Hydrogen bond switching among flavin and amino acid side chains in the BLUF photoreceptor observed by ultrafast infrared spectroscopy.
Biophysical journal 2008;95(10):4790-802.
2008: Natalia P Pawlowicz; Rienk van Grondelle; Ivo H M van Stokkum; Jacques Breton; Michael R Jones; Marie Louise Groot
Identification of the first steps in charge separation in bacterial photosynthetic reaction centers of Rhodobacter sphaeroides by ultrafast mid-infrared spectroscopy: electron transfer and protein dynamics.
Biophysical journal 2008;95(3):1268-84.
2008: K C Toh; Ivo H M van Stokkum; Johnny Hendriks; Maxime T A Alexandre; Jos C Arents; Marcela Avila Perez; Rienk van Grondelle; Klaas J Hellingwerf; John T M Kennis
On the signaling mechanism and the absence of photoreversibility in the AppA BLUF domain.
Biophysical journal 2008;95(1):312-21.
2008: Alisa Rupenyan; Ivo H M van Stokkum; Jos C Arents; Rienk van Grondelle; Klaas J Hellingwerf; Marie Louise Groot
Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy.
Biophysical journal 2008;94(10):4020-30.
2008: Chantal D van der Weij-de Wit; Alexander B Doust; Ivo H M van Stokkum; Jan P Dekker; Krystyna E Wilk; Paul M G Curmi; Rienk van Grondelle
Phycocyanin sensitizes both photosystem I and photosystem II in cryptophyte Chroomonas CCMP270 cells.
Biophysical journal 2008;94(6):2423-33.
2007: Alexander V Ruban; Rudi Berera; Cristian Ilioaia; Ivo H M van Stokkum; John T M Kennis; Andrew A Pascal; Herbert van Amerongen; Bruno Robert; Peter Horton; Rienk van Grondelle
Identification of a mechanism of photoprotective energy dissipation in higher plants.
Nature 2007;450(7169):575-8.
2007: Irina Petkova; Maria S Mudadu; Ajay Singh; Randolph P Thummel; Ivo H M van Stokkum; Wybren Jan Buma; Jacek Waluk
Structure and photophysics of 2-(2'-pyridyl)benzindoles: the role of intermolecular hydrogen bonds.
The journal of physical chemistry. A 2007;111(45):11400-9.
2007: N P Pawlowicz; Marie Louise Groot; Ivo H M van Stokkum; J Breton; Rienk van Grondelle
Charge separation and energy transfer in the photosystem II core complex studied by femtosecond midinfrared spectroscopy.
Biophysical journal 2007;93(8):2732-42.
2007: Maxime T A Alexandre; Daniel C Lührs; Ivo H M van Stokkum; Roger G Hiller; Marie Louise Groot; John T M Kennis; Rienk van Grondelle
Triplet state dynamics in peridinin-chlorophyll-a-protein: a new pathway of photoprotection in LHCs?
Biophysical journal 2007;93(6):2118-28.
2007: Victor Arni D P Sicam; Joris Snellenburg; Rob G L van der Heijde; Ivo H M van Stokkum
Pseudo forward ray-tracing: a new method for surface validation in cornea topography.
Optometry and vision science : official publication of the American Academy of Optometry 2007;84(9):915-23.
2007: Mariangela Di Donato; Rienk van Grondelle; Ivo H M van Stokkum; Marie Louise Groot
Excitation energy transfer in the photosystem II core antenna complex CP43 studied by femtosecond visible/visible and visible/mid-infrared pump probe spectroscopy.
The journal of physical chemistry. B 2007;111(25):7345-52.
2007: Magdalena Gauden; Jeffrey S Grinstead; Wouter Laan; Ivo H M van Stokkum; Marcela Avila-Perez; K C Toh; Rolf Boelens; Robert Kaptein; Rienk van Grondelle; Klaas J Hellingwerf; John T M Kennis
On the role of aromatic side chains in the photoactivation of BLUF domains.
Biochemistry 2007;46(25):7405-15.
2007: Rudi Berera; Ivo H M van Stokkum; Gerdenis Kodis; Amy E Keirstead; Smitha Pillai; Christian Herrero; Rodrigo E Palacios; Mikas Vengris; Rienk van Grondelle; Devens Gust; Thomas A Moore; Ana L Moore; John T M Kennis
Energy transfer, excited-state deactivation, and exciplex formation in artificial caroteno-phthalocyanine light-harvesting antennas.
The journal of physical chemistry. B 2007;111(24):6868-77.
2007: Janne A Ihalainen; Jens Bredenbeck; Rolf Pfister; Jan Helbing; Lei Chi; Ivo H M van Stokkum; andrew woolley; Peter Hamm
Folding and unfolding of a photoswitchable peptide from picoseconds to microseconds.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(13):5383-8.
2006: Chantal D van der Weij-de Wit; Alexander B Doust; Ivo H M van Stokkum; Jan P Dekker; Krystyna E Wilk; Paul M G Curmi; Gregory D Scholes; Rienk van Grondelle
How energy funnels from the phycoerythrin antenna complex to photosystem I and photosystem II in cryptophyte Rhodomonas CS24 cells.
The journal of physical chemistry. B 2006;110(49):25066-73.
2006: Jérôme Baffreau; Stéphanie Leroy-Lhez; Piétrick Hudhomme; Michiel M Groeneveld; Ivo H M van Stokkum; René M Williams
Superabsorbing fullerenes: spectral and kinetic characterization of photoinduced interactions in perylenediimide-fullerene-C60 dyads.
The journal of physical chemistry. A 2006;110(49):13123-5.
2006: Rudi Berera; Gary F Moore; Ivo H M van Stokkum; Gerdenis Kodis; Paul A Liddell; Miguel Gervaldo; Rienk van Grondelle; John T M Kennis; Devens Gust; Thomas A Moore; Ana L Moore
Charge separation and energy transfer in a caroteno-C60 dyad: photoinduced electron transfer from the carotenoid excited states.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology 2006;5(12):1142-9.
2006: Luuk J G W van Wilderen; Michael A van Der Horst; Ivo H M van Stokkum; Klaas J Hellingwerf; Rienk van Grondelle; Marie Louise Groot
Ultrafast infrared spectroscopy reveals a key step for successful entry into the photocycle for photoactive yellow protein.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(41):15050-5.
2006: Tomás Polívka; Ivo H M van Stokkum; Donatas Zigmantas; Rienk van Grondelle; Villy Sundström; Roger G Hiller
Energy transfer in the major intrinsic light-harvesting complex from Amphidinium carterae.
Biochemistry 2006;45(28):8516-26.
2006: Magdalena Gauden; Ivo H M van Stokkum; Jason M Key; Daniel Ch Lührs; Rienk van Grondelle; Peter Hegemann; John T M Kennis
Hydrogen-bond switching through a radical pair mechanism in a flavin-binding photoreceptor.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(29):10895-900.
2006: Miguel A Palacios; Jörg Standfuss; Mikas Vengris; Bart van Oort; Ivo H M van Stokkum; Werner Kühlbrandt; Herbert van Amerongen; Rienk van Grondelle
A comparison of the three isoforms of the light-harvesting complex II using transient absorption and time-resolved fluorescence measurements.
Photosynthesis research 2006;88(3):269-85.
2006: Sergey Yeremenko; Ivo H M van Stokkum; John Keith Moffat; Klaas J Hellingwerf
Influence of the crystalline state on photoinduced dynamics of photoactive yellow protein studied by ultraviolet-visible transient absorption spectroscopy.
Biophysical journal 2006;90(11):4224-35.
2006: Rudi Berera; Christian Herrero; Ivo H M van Stokkum; Mikas Vengris; Gerdenis Kodis; Rodrigo E Palacios; Herbert van Amerongen; Rienk van Grondelle; Devens Gust; Thomas A Moore; Ana L Moore; John T M Kennis
A simple artificial light-harvesting dyad as a model for excess energy dissipation in oxygenic photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(14):5343-8.
2006: Emmanouil Papagiannakis; Ivo H M van Stokkum; Mikas Vengris; Richard J Cogdell; Rienk van Grondelle; Delmar S Larsen
Excited-state dynamics of carotenoids in light-harvesting complexes. 1. Exploring the relationship between the S1 and S* states.
The journal of physical chemistry. B 2006;110(11):5727-36.
2006: Ivo H M van Stokkum; Bas Gobets; Thomas Gensch; F van Mourik; Klaas J Hellingwerf; R van Grondelle; John T M Kennis
(Sub)-picosecond spectral evolution of fluorescence in photoactive proteins studied with a synchroscan streak camera system.
Photochemistry and photobiology 2006;82(2):380-8.
2006: Emmanouil Papagiannakis; Mikas Vengris; Delmar S Larsen; Ivo H M van Stokkum; Roger G Hiller; Rienk van Grondelle
Use of ultrafast dispersed pump-dump-probe and pump-repump-probe spectroscopies to explore the light-induced dynamics of peridinin in solution.
The journal of physical chemistry. B 2006;110(1):512-21.
2005: Janne A Ihalainen; Roberta Croce; Tomas Morosinotto; Ivo H M van Stokkum; Roberto Bassi; Jan P Dekker; Rienk van Grondelle
Excitation decay pathways of Lhca proteins: a time-resolved fluorescence study.
The journal of physical chemistry. B 2005;109(44):21150-8.
2005: Marie Louise Groot; Natalia P Pawlowicz; Luuk J G W van Wilderen; Jacques Breton; Ivo H M van Stokkum; Rienk van Grondelle
Initial electron donor and acceptor in isolated Photosystem II reaction centers identified with femtosecond mid-IR spectroscopy.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(37):13087-92.
2005: Janne A Ihalainen; Frank Klimmek; Ulrika Ganeteg; Ivo H M van Stokkum; Rienk van Grondelle; Stefan Jansson; Jan P Dekker
Excitation energy trapping in photosystem I complexes depleted in Lhca1 and Lhca4.
FEBS letters 2005;579(21):4787-91.
2005: Alexander B Doust; Ivo H M van Stokkum; Delmar S Larsen; Krystyna E Wilk; Paul M G Curmi; Rienk van Grondelle; Gregory D Scholes
Mediation of ultrafast light-harvesting by a central dimer in phycoerythrin 545 studied by transient absorption and global analysis.
The journal of physical chemistry. B 2005;109(29):14219-26.
2005: Remco Kort; Andrea C O'Brien; Ivo H M van Stokkum; S J C M Oomes; Wim Crielaard; Klaas J Hellingwerf; Stanley Brul
Assessment of heat resistance of bacterial spores from food product isolates by fluorescence monitoring of dipicolinic acid release.
Applied and environmental microbiology 2005;71(7):3556-64.
2005: Michael A van Der Horst; Ivo H M van Stokkum; Norbert A Dencher; Klaas J Hellingwerf
Controlled reduction of the humidity induces a shortcut recovery reaction in the photocycle of photoactive yellow protein.
Biochemistry 2005;44(25):9160-7.
2005: Armin Sautter; Basak Kükrer Kaletas; Dietmar G Schmid; Rainer Dobrawa; Mikhail Zimine; Günther Jung; Ivo H M van Stokkum; Luisa De Cola; René M Williams; Frank Würthner
Ultrafast energy-electron transfer cascade in a multichromophoric light-harvesting molecular square.
Journal of the American Chemical Society 2005;127(18):6719-29.
2005: Grzegorz Balkowski; Anna Szemik-Hojniak; Ivo H M van Stokkum; Hong Zhang; Wybren Jan Buma
Femtosecond excited state studies of the two-center three-electron bond driven twisted internal charge transfer dynamics in 1,8-bis(dimethylamino)naphthalene.
The journal of physical chemistry. A 2005;109(16):3535-41.
2005: Magdalena Gauden; Sergey Yeremenko; Wouter Laan; Ivo H M van Stokkum; Janne A Ihalainen; Rienk van Grondelle; Klaas J Hellingwerf; John T M Kennis
Photocycle of the flavin-binding photoreceptor AppA, a bacterial transcriptional antirepressor of photosynthesis genes.
Biochemistry 2005;44(10):3653-62.
2005: Krzysztof Gibasiewicz; Roberta Croce; Tomas Morosinotto; Janne A Ihalainen; Ivo H M van Stokkum; Jan P Dekker; Roberto Bassi; Rienk van Grondelle
Excitation energy transfer pathways in Lhca4.
Biophysical journal 2005;88(3):1959-69.
2005: Janne A Ihalainen; Ivo H M van Stokkum; Krzysztof Gibasiewicz; Marta Germano; Rienk van Grondelle; Jan P Dekker
Kinetics of excitation trapping in intact Photosystem I of Chlamydomonas reinhardtii and Arabidopsis thaliana.
Biochimica et biophysica acta 2005;1706(3):267-75.
2004: John T M Kennis; Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Jasper J van Thor; Rienk van Grondelle
Uncovering the hidden ground state of green fluorescent protein.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(52):17988-93.
2004: Emmanouil Papagiannakis; Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Roger G Hiller; Rienk van Grondelle
Resolving the excited state equilibrium of peridinin in solution.
Biochemistry 2004;43(49):15303-9.
2004: Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Michael A van Der Horst; Frank L de Weerd; Klaas J Hellingwerf; Rienk van Grondelle
Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy.
Biophysical journal 2004;87(3):1858-72.
2004: Mikas Vengris; Michael A van Der Horst; Goran Zgrablic; Ivo H M van Stokkum; Stefan Haacke; Majed Chergui; Klaas J Hellingwerf; Rienk van Grondelle; Delmar S Larsen
Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: protein versus solvent environments.
Biophysical journal 2004;87(3):1848-57.
2004: Ivo H M van Stokkum; Delmar S Larsen; Rienk van Grondelle
Global and target analysis of time-resolved spectra.
Biochimica et biophysica acta 2004;1657(2-3):82-104.
2004: John T M Kennis; Ivo H M van Stokkum; Sean Crosson; Magdalena Gauden; John Keith Moffat; Rienk van Grondelle
The LOV2 domain of phototropin: a reversible photochromic switch.
Journal of the American Chemical Society 2004;126(14):4512-3.
2004: Delmar S Larsen; Mikas Vengris; Ivo H M van Stokkum; Michael A van Der Horst; Frank L de Weerd; Klaas J Hellingwerf; Rienk van Grondelle
Photoisomerization and photoionization of the photoactive yellow protein chromophore in solution.
Biophysical journal 2004;86(4):2538-50.
2004: Marta Germano; Claudiu C Gradinaru; Anatoli Ya Shkuropatov; Ivo H M van Stokkum; Vladimir A Shuvalov; Jan P Dekker; Rienk van Grondelle; Hans J van Gorkom
Energy and electron transfer in photosystem II reaction centers with modified pheophytin composition.
Biophysical journal 2004;86(3):1664-72.
2003: Bas Gobets; Ivo H M van Stokkum; Frank van Mourik; Jan P Dekker; Rienk van Grondelle
Excitation wavelength dependence of the fluorescence kinetics in Photosystem I particles from Synechocystis PCC 6803 and Synechococcus elongatus.
Biophysical journal 2003;85(6):3883-98.
2003: Marie Louise Groot; Luuk J G W van Wilderen; Delmar S Larsen; Michael A van Der Horst; Ivo H M van Stokkum; Klaas J Hellingwerf; Rienk van Grondelle
Initial steps of signal generation in photoactive yellow protein revealed with femtosecond mid-infrared spectroscopy.
Biochemistry 2003;42(34):10054-9.
2003: Wouter Laan; Michael A van Der Horst; Ivo H M van Stokkum; Klaas J Hellingwerf
Initial characterization of the primary photochemistry of AppA, a blue-light-using flavin adenine dinucleotide-domain containing transcriptional antirepressor protein from Rhodobacter sphaeroides: a key role for reversible intramolecular proton transfer from the flavin adenine dinucleotide chromophore to a conserved tyrosine?
Photochemistry and photobiology 2003;78(3):290-7.
2003: Miguel A Palacios; raoul frese; Claudiu C Gradinaru; Ivo H M van Stokkum; Lavanya L Premvardhan; Peter Horton; Alexander V Ruban; Rienk van Grondelle; Herbert van Amerongen
Stark spectroscopy of the light-harvesting complex II in different oligomerisation states.
Biochimica et biophysica acta 2003;1605(1-3):83-95.
2003: raoul frese; Marta Germano; Frank L de Weerd; Ivo H M van Stokkum; Anatoli Ya Shkuropatov; Vladimir A Shuvalov; Hans J van Gorkom; Rienk van Grondelle; Jan P Dekker
Electric field effects on the chlorophylls, pheophytins, and beta-carotenes in the reaction center of photosystem II.
Biochemistry 2003;42(30):9205-13.
2003: Derren J Heyes; C Neil Hunter; Ivo H M van Stokkum; Rienk van Grondelle; Marie Louise Groot
Ultrafast enzymatic reaction dynamics in protochlorophyllide oxidoreductase.
Nature structural biology 2003;10(6):491-2.
2003: John T M Kennis; Sean Crosson; Magdalena Gauden; Ivo H M van Stokkum; John Keith Moffat; Rienk van Grondelle
Primary reactions of the LOV2 domain of phototropin, a plant blue-light photoreceptor.
Biochemistry 2003;42(12):3385-92.
2003: Andrea Haker; Johnny Hendriks; Ivo H M van Stokkum; Joachim Heberle; Klaas J Hellingwerf; Wim Crielaard; Thomas Gensch
The two photocycles of photoactive yellow protein from Rhodobacter sphaeroides.
The Journal of biological chemistry 2003;278(10):8442-51.
2003: Johnny Hendriks; Ivo H M van Stokkum; Klaas J Hellingwerf
Deuterium isotope effects in the photocycle transitions of the photoactive yellow protein.
Biophysical journal 2003;84(2 Pt 1):1180-91.
2003: Markus Wendling; Frank van Mourik; Ivo H M van Stokkum; Jante M Salverda; Hartmut Michel; Rienk van Grondelle
Low-intensity pump-probe measurements on the B800 band of Rhodospirillum molischianum.
Biophysical journal 2003;84(1):440-9.
2002: Anjali Pandit; Hairong Ma; Ivo H M van Stokkum; Martin Gruebele; Rienk van Grondelle
Time-resolved dissociation of the light-harvesting 1 complex of Rhodospirillum rubrum, studied by infrared laser temperature jump.
Biochemistry 2002;41(51):15115-20.
2002: Janne A Ihalainen; Poul Erik Jensen; Anna Haldrup; Ivo H M van Stokkum; Rienk van Grondelle; Henrik Vibe Scheller; Jan P Dekker
Pigment organization and energy transfer dynamics in isolated photosystem I (PSI) complexes from Arabidopsis thaliana depleted of the PSI-G, PSI-K, PSI-L, or PSI-N subunit.
Biophysical journal 2002;83(4):2190-201.
2002: raoul frese; Miguel A Palacios; Aissa Azzizi; Ivo H M van Stokkum; Jochen Kruip; Matthias Rögner; Navassard V Karapetyan; Eberhard Schlodder; Rienk van Grondelle; Jan P Dekker
Electric field effects on red chlorophylls, beta-carotenes and P700 in cyanobacterial Photosystem I complexes.
Biochimica et biophysica acta 2002;1554(3):180-91.
2002: Emmanouil Papagiannakis; John T M Kennis; Ivo H M van Stokkum; Richard J Cogdell; Rienk van Grondelle
An alternative carotenoid-to-bacteriochlorophyll energy transfer pathway in photosynthetic light harvesting.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):6017-22.
2002: Frank L de Weerd; Ivo H M van Stokkum; Herbert van Amerongen; Jan P Dekker; Rienk van Grondelle
Pathways for energy transfer in the core light-harvesting complexes CP43 and CP47 of photosystem II.
Biophysical journal 2002;82(3):1586-97.
2002: Bart J van Rotterdam; Wim Crielaard; Ivo H M van Stokkum; Klaas J Hellingwerf; Hans V Westerhoff
Simplicity in complexity: the photosynthetic reaction center performs as a simple 0.2 V battery.
FEBS letters 2002;510(1-2):105-7.
2001: George W H Wurpel; Albert M Brouwer; Ivo H M van Stokkum; A Farran; David A Leigh
Enhanced hydrogen bonding induced by optical excitation: unexpected subnanosecond photoinduced dynamics in a peptide-based [2]rotaxane.
Journal of the American Chemical Society 2001;123(45):11327-8.
2001: A Pandit; R W Visschers; Ivo H M van Stokkum; Ruud Kraayenhof; Rienk van Grondelle
Oligomerization of light-harvesting I antenna peptides of Rhodospirillum rubrum.
Biochemistry 2001;40(43):12913-24.
2001: Petra A W van den Berg; Scott B Mulrooney; Bas Gobets; Ivo H M van Stokkum; Arie van Hoek; Charles H Williams; Antonie J W G Visser
Exploring the conformational equilibrium of E. coli thioredoxin reductase: characterization of two catalytically important states by ultrafast flavin fluorescence spectroscopy.
Protein science : a publication of the Protein Society 2001;10(10):2037-49.
2001: O F Larsen; Ivo H M van Stokkum; Bas Gobets; Rienk van Grondelle; Herbert van Amerongen
Probing the structure and dynamics of a DNA hairpin by ultrafast quenching and fluorescence depolarization.
Biophysical journal 2001;81(2):1115-26.
2001: Bas Gobets; Ivo H M van Stokkum; Matthias Rögner; Jochen Kruip; Eberhard Schlodder; Navassard V Karapetyan; Jan P Dekker; Rienk van Grondelle
Time-resolved fluorescence emission measurements of photosystem I particles of various cyanobacteria: a unified compartmental model.
Biophysical journal 2001;81(1):407-24.
2001: B P Krueger; S S Lampoura; Ivo H M van Stokkum; Emmanouil Papagiannakis; Jante M Salverda; Claudiu C Gradinaru; Danielis Rutkauskas; Roger G Hiller; Rienk van Grondelle
Energy transfer in the peridinin chlorophyll-a protein of Amphidinium carterae studied by polarized transient absorption and target analysis.
Biophysical journal 2001;80(6):2843-55.
2001: Michael A van Der Horst; Ivo H M van Stokkum; Wim Crielaard; Klaas J Hellingwerf
The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation.
FEBS letters 2001;497(1):26-30.
2001: Claudiu C Gradinaru; John T M Kennis; Emmanouil Papagiannakis; Ivo H M van Stokkum; Richard J Cogdell; Graham R Fleming; Robert A Niederman; Rienk van Grondelle
An unusual pathway of excitation energy deactivation in carotenoids: singlet-to-triplet conversion on an ultrafast timescale in a photosynthetic antenna.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2364-9.
2000: FJ Kleima; E Hofmann; Bas Gobets; Ivo H M van Stokkum; Rienk van Grondelle; K Diederichs; Herbert van Amerongen
Förster excitation energy transfer in peridinin-chlorophyll-a-protein.
Biophysical journal 2000;78(1):344-53.
1999: Marie Louise Groot; raoul frese; Frank L de Weerd; K Bromek; A Pettersson; Erwin J G Peterman; Ivo H M van Stokkum; Rienk van Grondelle; Jan P Dekker
Spectroscopic properties of the CP43 core antenna protein of photosystem II.
Biophysical journal 1999;77(6):3328-40.
1999: Johnny Hendriks; Ivo H M van Stokkum; Wim Crielaard; Klaas J Hellingwerf
Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila.
FEBS letters 1999;458(2):252-6.
1999: ME Van Brederode; Ivo H M van Stokkum; E Katilius; Frank van Mourik; Michael R Jones; Rienk van Grondelle
Primary charge separation routes in the BChl:BPhe heterodimer reaction centers of Rhodobacter sphaeroides.
Biochemistry 1999;38(23):7545-55.
1999: ME Van Brederode; Frank van Mourik; Ivo H M van Stokkum; Michael R Jones; Rienk van Grondelle
Multiple pathways for ultrafast transduction of light energy in the photosynthetic reaction center of Rhodobacter sphaeroides.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(5):2054-9.
1999: Wouter D Hoff; A Xie; Ivo H M van Stokkum; X J Tang; J Gural; Arthur Kroon; Klaas J Hellingwerf
Global conformational changes upon receptor stimulation in photoactive yellow protein.
Biochemistry 1999;38(3):1009-17.
1998: Claudiu C Gradinaru; S Ozdemir; D Gülen; Ivo H M van Stokkum; Rienk van Grondelle; Herbert van Amerongen
The flow of excitation energy in LHCII monomers: implications for the structural model of the major plant antenna.
Biophysical journal 1998;75(6):3064-77.
1997: John T M Kennis; Anatoli Ya Shkuropatov; Ivo H M van Stokkum; Peter Gast; Arnold J Hoff; Vladimir A Shuvalov; Thijs J Aartsma
Formation of a long-lived P+BA- state in plant pheophytin-exchanged reaction centers of Rhodobacter sphaeroides R26 at low temperature.
Biochemistry 1997;36(51):16231-8.
1997: FJ Kleima; Claudiu C Gradinaru; F Calkoen; Ivo H M van Stokkum; Rienk van Grondelle; Herbert van Amerongen
Energy transfer in LHCII monomers at 77K studied by sub-picosecond transient absorption spectroscopy.
Biochemistry 1997;36(49):15262-8.
1997: Ivo H M van Stokkum; L M Beekman; Michael R Jones; ME Van Brederode; Rienk van Grondelle
Primary electron transfer kinetics in membrane-bound Rhodobacter sphaeroides reaction centers: a global and target analysis.
Biochemistry 1997;36(38):11360-8.
1997: GW Abbott; M Bloemendal; Ivo H M van Stokkum; EA Mercer; R T Miller; S Sewing; M Wolters; Olaf Pongs; Kaila Surjit Srai
Secondary structure, stability and tetramerisation of recombinant K(V)1.1 potassium channel cytoplasmic N-terminal fragment.
Biochimica et biophysica acta 1997;1341(1):71-8.
1997: ME Van Brederode; Michael R Jones; Frank van Mourik; Ivo H M van Stokkum; Rienk van Grondelle
A new pathway for transmembrane electron transfer in photosynthetic reaction centers of Rhodobacter sphaeroides not involving the excited special pair.
Biochemistry 1997;36(23):6855-61.
1996: ME Van Brederode; Wouter D Hoff; Ivo H M van Stokkum; Marie Louise Groot; Klaas J Hellingwerf
Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.
Biophysical journal 1996;71(1):365-80.
1995: L M Beekman; R W Visschers; R Monshouwer; M Heer-Dawson; T A Mattioli; P McGlynn; C Neil Hunter; Bruno Robert; Ivo H M van Stokkum; Rienk van Grondelle
Time-resolved and steady-state spectroscopic analysis of membrane-bound reaction centers from Rhodobacter sphaeroides: comparisons with detergent-solubilized complexes.
Biochemistry 1995;34(45):14712-21.
1995: B van Haeringen; F de Lange; Ivo H M van Stokkum; Kaila Surjit Srai; R W Evans; Rienk van Grondelle; M Bloemendal
Dynamic structure of human serum transferrin from transient electric birefringence experiments.
Proteins 1995;23(2):233-40.
1995: H M Visser; O J Somsen; Frank van Mourik; S Lin; Ivo H M van Stokkum; Rienk van Grondelle
Direct observation of sub-picosecond equilibration of excitation energy in the light-harvesting antenna of Rhodospirillum rubrum.
Biophysical journal 1995;69(3):1083-99.
1995: Ivo H M van Stokkum; H Linsdell; J M Hadden; PI Haris; D Chapman; M Bloemendal
Temperature-induced changes in protein structures studied by Fourier transform infrared spectroscopy and global analysis.
Biochemistry 1995;34(33):10508-18.
1995: Ivo H M van Stokkum; George Lambrou; Thomas J.T.P. van den Berg
Hemodynamic parameter estimation from ocular fluorescein angiograms.
Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv für klinische und experimentelle Ophthalmologie 1995;233(3):123-30.
1995: Marie Louise Groot; Erwin J G Peterman; Ivo H M van Stokkum; Jan P Dekker; Rienk van Grondelle
Triplet and fluorescing states of the CP47 antenna complex of photosystem II studied as a function of temperature.
Biophysical journal 1995;68(1):281-90.
1994: Wouter D Hoff; Ivo H M van Stokkum; H J van Ramesdonk; ME Van Brederode; A M Brouwer; J C Fitch; T E Meyer; Rienk van Grondelle; Klaas J Hellingwerf
Measurement and global analysis of the absorbance changes in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila.
Biophysical journal 1994;67(4):1691-705.
1994: J M Hadden; M Bloemendal; PI Haris; Ivo H M van Stokkum; D Chapman; Kaila Surjit Srai
Structure and thermal stability of the extracellular fragment of human transferrin receptor at extracellular and endosomal pH.
FEBS letters 1994;350(2-3):235-9.
1994: Marie Louise Groot; Erwin J G Peterman; P J van Kan; Ivo H M van Stokkum; Jan P Dekker; Rienk van Grondelle
Temperature-dependent triplet and fluorescence quantum yields of the photosystem II reaction center described in a thermodynamic model.
Biophysical journal 1994;67(1):318-30.
1993: R Pribić; Ivo H M van Stokkum; D Chapman; PI Haris; M Bloemendal
Protein secondary structure from Fourier transform infrared and/or circular dichroism spectra.
Analytical biochemistry 1993;214(2):366-78.
1990: Ivo H M van Stokkum; H J Spoelder; M Bloemendal; Rienk van Grondelle; F C Groen
Estimation of protein secondary structure and error analysis from circular dichroism spectra.
Analytical biochemistry 1990;191(1):110-8.