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Klaas van Wijk

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Mingshu Huang; Wojciech Majeran; Kenji Nishimura; Paul Dominic B Olinares; Xian Qu; Qi Sun; Giulia Friso; Klaas J van Wijk
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
Benoît Derrien; Joseph Ebenezer; Grégory Effantin; Giulia Friso; Wojciech Majeran; Michael R Maurizi; Alasdair C Steven; Klaas J van Wijk; Olivier Vallon
The purification of the Chlamydomonas reinhardtii chloroplast ClpP complex: additional subunits and structural features.
Peter K Lundquist; Jerrold I Davis; Klaas J van Wijk
ABC1K atypical kinases in plants: filling the organellar kinase void.

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2013: Mingshu Huang; Wojciech Majeran; Kenji Nishimura; Paul Dominic B Olinares; Xian Qu; Qi Sun; Giulia Friso; Klaas J van Wijk
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
Journal of proteome research 2013;12(1):491-504.
2012: Benoît Derrien; Joseph Ebenezer; Grégory Effantin; Giulia Friso; Wojciech Majeran; Michael R Maurizi; Alasdair C Steven; Klaas J van Wijk; Olivier Vallon
The purification of the Chlamydomonas reinhardtii chloroplast ClpP complex: additional subunits and structural features.
Plant molecular biology 2012;80(2):189-202.
2012: Peter K Lundquist; Jerrold I Davis; Klaas J van Wijk
ABC1K atypical kinases in plants: filling the organellar kinase void.
Trends in plant science 2012;17(9):546-55.
2012: Yukari Asakura; Alice Barkan; Erin Galarneau; Kenneth P Watkins; Klaas J van Wijk
Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis.
Plant physiology 2012;159(3):961-74.
2012: Stéphane Bentolila; Giulia Friso; Wade P Heller; Tao Sun; Klaas J van Wijk; Arianne M Babina; Maureen R Hanson
RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(22):E1453-61.
2012: Peter K Lundquist; Anton Poliakov; Qi Sun; Nazmul H Bhuiyan; Boris Zybailov; Klaas J van Wijk
The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
Plant physiology 2012;158(3):1172-92.
2011: Paul Dominic B Olinares; Jitae Kim; Klaas J van Wijk
The Clp protease system; a central component of the chloroplast protease network.
Biochimica et biophysica acta 2011;1807(8):999-1011.
2011: David Wickström; Samuel Wagner; Per Simonsson; Ovidiu Ioan Pop; Louise Baars; A Jimmy Ytterberg; Klaas J van Wijk; Joen Luirink; Jan-Willem de Gier
Characterization of the consequences of YidC depletion on the inner membrane proteome of E. coli using 2D blue native/SDS-PAGE.
Journal of molecular biology 2011;409(2):124-35.
2011: Paul Dominic B Olinares; Jerrold I Davis; Jitae Kim; Klaas J van Wijk
Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis.
The Plant cell 2011;23(6):2348-61.
2011: Klaas J van Wijk; Sacha Baginsky
Plastid proteomics in higher plants: current state and future goals.
Plant physiology 2011;155(4):1578-88.
2011: Kenneth P Watkins; Margarita Rojas; Giulia Friso; Klaas J van Wijk; Jörg Meurer; Alice Barkan
APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain.
The Plant cell 2011;23(3):1082-92.
2011: David Wickström; Samuel Wagner; Louise Baars; A Jimmy Ytterberg; Mirjam Klepsch; Klaas J van Wijk; Joen Luirink; Jan-Willem de Gier
Consequences of depletion of the signal recognition particle in Escherichia coli.
The Journal of biological chemistry 2011;286(6):4598-609.
2011: Giulia Friso; Paul Dominic B Olinares; Klaas J van Wijk
The workflow for quantitative proteome analysis of chloroplast development and differentiation, chloroplast mutants, and protein interactions by spectral counting.
Methods in molecular biology (Clifton, N.J.) 2011;775():265-82.
2010: Wojciech Majeran; Giulia Friso; Lalit Ponnala; Brian Connolly; Mingshu Huang; Edwin Reidel; Cankui Zhang; Yukari Asakura; Nazmul H Bhuiyan; Qi Sun; Robert Turgeon; Klaas J van Wijk
Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.
The Plant cell 2010;22(11):3509-42.
2010: Paul Dominic B Olinares; Lalit Ponnala; Klaas J van Wijk
Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.
Molecular & cellular proteomics : MCP 2010;9(7):1594-615.
2009: Boris Zybailov; Qi Sun; Klaas J van Wijk
Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library.
Analytical chemistry 2009;81(19):8015-24.
2009: Boris Zybailov; Giulia Friso; Jitae Kim; Andrea Rudella; Verenice Ramírez Rodríguez; Yukari Asakura; Qi Sun; Klaas J van Wijk
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.
Molecular & cellular proteomics : MCP 2009;8(8):1789-1810.
2009: Jitae Kim; Andrea Rudella; Verenice Ramirez Rodriguez; Boris Zybailov; Paul Dominic B Olinares; Klaas J van Wijk
Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.
The Plant cell 2009;21(6):1669-92.
2009: Tiffany S Kroeger; Kenneth P Watkins; Giulia Friso; Klaas J van Wijk; Alice Barkan
A plant-specific RNA-binding domain revealed through analysis of chloroplast group II intron splicing.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(11):4537-42.
2009: Wojciech Majeran; Klaas J van Wijk
Cell-type-specific differentiation of chloroplasts in C4 plants.
Trends in plant science 2009;14(2):100-9.
2008: Mirjam Klepsch; Susan Schlegel; David Wickström; Giulia Friso; Klaas J van Wijk; Jan-Olov Persson; Jan-Willem de Gier; Samuel Wagner
Immobilization of the first dimension in 2D blue native/SDS-PAGE allows the relative quantification of membrane proteomes.
Methods (San Diego, Calif.) 2008;46(2):48-53.
2008: Samuel Wagner; Mirjam M Klepsch; Susan Schlegel; Ansgar Appel; Roger Draheim; Michael Tarry; Martin Högbom; Klaas J van Wijk; Dirk-Jan Slotboom; Jan O Persson; Jan-Willem de Gier
Tuning Escherichia coli for membrane protein overexpression.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(38):14371-6.
2008: Jana Prikryl; Kenneth P Watkins; Giulia Friso; Klaas J van Wijk; Alice Barkan
A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis.
Nucleic acids research 2008;36(16):5152-65.
2008: Heidi Rutschow; A Jimmy Ytterberg; Giulia Friso; Robert Nilsson; Klaas J van Wijk
Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.
Plant physiology 2008;148(1):156-75.
2008: Wojciech Majeran; Boris Zybailov; A Jimmy Ytterberg; Jason Dunsmore; Qi Sun; Klaas J van Wijk
Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.
Molecular & cellular proteomics : MCP 2008;7(9):1609-38.
2008: Louise Baars; Samuel Wagner; David Wickström; Mirjam Klepsch; A Jimmy Ytterberg; Klaas J van Wijk; Jan-Willem de Gier
Effects of SecE depletion on the inner and outer membrane proteomes of Escherichia coli.
Journal of bacteriology 2008;190(10):3505-25.
2008: Boris Zybailov; Heidi Rutschow; Giulia Friso; Andrea Rudella; Olof Emanuelsson; Qi Sun; Klaas J van Wijk
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
PloS one 2008;3(4):e1994.
2007: Lisa Giacomelli; Antonio Masi; Daniel R Ripoll; Mi Ja Lee; Klaas J van Wijk
Arabidopsis thaliana deficient in two chloroplast ascorbate peroxidases shows accelerated light-induced necrosis when levels of cellular ascorbate are low.
Plant molecular biology 2007;65(5):627-44.
2007: Samuel Wagner; Louise Baars; A Jimmy Ytterberg; Anja Klussmeier; Claudia S Wagner; Olof Nord; Per-Ake Nygren; Klaas J van Wijk; Jan-Willem de Gier
Consequences of membrane protein overexpression in Escherichia coli.
Molecular & cellular proteomics : MCP 2007;6(9):1527-50.
2007: Kenneth P Watkins; Tiffany S Kroeger; Amy M Cooke; Rosalind E Williams-Carrier; Giulia Friso; Susan Belcher; Klaas J van Wijk; Alice Barkan
A ribonuclease III domain protein functions in group II intron splicing in maize chloroplasts.
The Plant cell 2007;19(8):2606-23.
2007: Peter J Schoonheim; Helena Veiga; Daniel da Costa Pereira; Giulia Friso; Klaas J van Wijk; Albertus H de Boer
A comprehensive analysis of the 14-3-3 interactome in barley leaves using a complementary proteomics and two-hybrid approach.
Plant physiology 2007;143(2):670-83.
2007: Riitta M Nissinen; A Jimmy Ytterberg; AJ Bogdanove; Klaas J van Wijk; Steven V Beer
Analyses of the secretomes of Erwinia amylovora and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels.
Molecular plant pathology 2007;8(1):55-67.
2007: Klaas J van Wijk; Jean-Benoit Peltier; Lisa Giacomelli
Isolation of chloroplast proteins from Arabidopsis thaliana for proteome analysis.
Methods in molecular biology (Clifton, N.J.) 2007;355():43-8.
2006: Andrea Rudella; Giulia Friso; Jose M Alonso; Joseph R Ecker; Klaas J van Wijk
Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis.
The Plant cell 2006;18(7):1704-21.
2006: Lisa Giacomelli; Andrea Rudella; Klaas J van Wijk
High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study.
Plant physiology 2006;141(2):685-701.
2006: Zach Adam; Andrea Rudella; Klaas J van Wijk
Recent advances in the study of Clp, FtsH and other proteases located in chloroplasts.
Current opinion in plant biology 2006;9(3):234-40.
2006: Louise Baars; A Jimmy Ytterberg; David Drew; Samuel Wagner; Claudia Thilo; Klaas J van Wijk; Jan-Willem de Gier
Defining the role of the Escherichia coli chaperone SecB using comparative proteomics.
The Journal of biological chemistry 2006;281(15):10024-34.
2006: A Jimmy Ytterberg; Jean-Benoit Peltier; Klaas J van Wijk
Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.
Plant physiology 2006;140(3):984-97.
2006: Vlad Zabrouskov; Xuemei Han; Ervin Welker; Huili Zhai; Cheng Lin; Klaas J van Wijk; Harold A Scheraga; Fred W McLafferty
Stepwise deamidation of ribonuclease A at five sites determined by top down mass spectrometry.
Biochemistry 2006;45(3):987-92.
2006: Jean-Benoit Peltier; Yang Cai; Qi Sun; Vlad Zabrouskov; Lisa Giacomelli; Andrea Rudella; A Jimmy Ytterberg; Heidi Rutschow; Klaas J van Wijk
The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts.
Molecular & cellular proteomics : MCP 2006;5(1):114-33.
2005: Wojciech Majeran; Giulia Friso; Klaas J van Wijk; Olivier Vallon
The chloroplast ClpP complex in Chlamydomonas reinhardtii contains an unusual high molecular mass subunit with a large apical domain.
The FEBS journal 2005;272(21):5558-71.
2005: Wojciech Majeran; Yang Cai; Qi Sun; Klaas J van Wijk
Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics.
The Plant cell 2005;17(11):3111-40.
2005: David Drew; Dirk-Jan Slotboom; Giulia Friso; Torsten Reda; Pierre Genevaux; Mikaela Rapp; Nadja M Meindl-Beinker; Wietske Lambert; Mirjam Lerch; Daniel O Daley; Klaas J van Wijk; Judy Hirst; Edmund R S Kunji; Jan-Willem de Gier
A scalable, GFP-based pipeline for membrane protein overexpression screening and purification.
Protein science : a publication of the Protein Society 2005;14(8):2011-7.
2004: Klaas J van Wijk
Plastid proteomics.
Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2004;42(12):963-77.
2004: Jean-Benoit Peltier; A Jimmy Ytterberg; Qi Sun; Klaas J van Wijk
New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy.
The Journal of biological chemistry 2004;279(47):49367-83.
2004: Daniel F Klessig; A Jimmy Ytterberg; Klaas J van Wijk
The pathogen-inducible nitric oxide synthase (iNOS) in plants is a variant of the P protein of the glycine decarboxylase complex.
Cell 2004;119(3):445.
2004: Mônica T V Labate; Kenton Ko; Zdenka W Ko; Luciana S R Costa Pinto; Maria J U D Real; Marcelo Ribeiro Romano; Paulo Roxo Barja; Antonio Granell; Giulia Friso; Klaas J van Wijk; Enrico Brugnoli; Carlos A Labate
Constitutive expression of pea Lhcb 1-2 in tobacco affects plant development, morphology and photosynthetic capacity.
Plant molecular biology 2004;55(5):701-14.
2004: Qi Sun; Olof Emanuelsson; Klaas J van Wijk
Analysis of curated and predicted plastid subproteomes of Arabidopsis. Subcellular compartmentalization leads to distinctive proteome properties.
Plant physiology 2004;135(2):723-34.
2004: Jean-Benoit Peltier; Daniel R Ripoll; Giulia Friso; Andrea Rudella; Yang Cai; Jimmy Ytterberg; Lisa Giacomelli; Jaroslaw Pillardy; Klaas J van Wijk
Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.
The Journal of biological chemistry 2004;279(6):4768-81.
2003: Vlad Zabrouskov; Lisa Giacomelli; Klaas J van Wijk; Fred W McLafferty
A new approach for plant proteomics: characterization of chloroplast proteins of Arabidopsis thaliana by top-down mass spectrometry.
Molecular & cellular proteomics : MCP 2003;2(12):1253-60.
2003: Meena R Chandok; A Jimmy Ytterberg; Klaas J van Wijk; Daniel F Klessig
The pathogen-inducible nitric oxide synthase (iNOS) in plants is a variant of the P protein of the glycine decarboxylase complex.
Cell 2003;113(4):469-82.
2003: John Tregoning; Peter Nixon; Hiroshi Kuroda; Zora Svab; Simon Clare; Frances Bowe; Neil Fairweather; Jimmy Ytterberg; Klaas J van Wijk; Gordon Dougan; Pal Maliga
Expression of tetanus toxin Fragment C in tobacco chloroplasts.
Nucleic acids research 2003;31(4):1174-9.
2002: Robert Nilsson; Klaas J van Wijk
Transient interaction of cpSRP54 with elongating nascent chains of the chloroplast-encoded D1 protein; 'cpSRP54 caught in the act'.
FEBS letters 2002;524(1-3):127-33.
2002: Fenglei Jiang; Liang Yi; Misty Moore; Minyong Chen; Thomas Rohl; Klaas J van Wijk; Jan-Willem de Gier; Ralph Henry; Ross E Dalbey
Chloroplast YidC homolog Albino3 can functionally complement the bacterial YidC depletion strain and promote membrane insertion of both bacterial and chloroplast thylakoid proteins.
The Journal of biological chemistry 2002;277(22):19281-8.
2002: Jean-Benoit Peltier; Olof Emanuelsson; Dario E Kalume; Jimmy Ytterberg; Giulia Friso; Andrea Rudella; David A Liberles; Linda Söderberg; Peter Roepstorff; Gunnar von Heijne; Klaas J van Wijk
Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction.
The Plant cell 2002;14(1):211-36.
2001: T Röhl; Klaas J van Wijk
In vitro reconstitution of insertion and processing of cytochrome f in a homologous chloroplast translation system.
The Journal of biological chemistry 2001;276(38):35465-72.
2001: Linda Fröderberg; T Röhl; Klaas J van Wijk; Jan-Willem de Gier
Complementation of bacterial SecE by a chloroplastic homologue.
FEBS letters 2001;498(1):52-6.
2001: Jean-Benoit Peltier; Jimmy Ytterberg; David A Liberles; Peter Roepstorff; Klaas J van Wijk
Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana.
The Journal of biological chemistry 2001;276(19):16318-27.
2000: Lixin Zhang; Virpi Paakkarinen; Klaas J van Wijk; Eva-Mari Aro
Biogenesis of the chloroplast-encoded D1 protein: regulation of translation elongation, insertion, and assembly into photosystem II.
The Plant cell 2000;12(9):1769-82.
2000: Jean-Benoit Peltier; Giulia Friso; Dario E Kalume; Peter Roepstorff; F Nilsson; Iwona Adamska; Klaas J van Wijk
Proteomics of the chloroplast: systematic identification and targeting analysis of lumenal and peripheral thylakoid proteins.
The Plant cell 2000;12(3):319-41.
1999: Lixin Zhang; Virpi Paakkarinen; Klaas J van Wijk; Eva-Mari Aro
Co-translational assembly of the D1 protein into photosystem II.
The Journal of biological chemistry 1999;274(23):16062-7.
1999: Robert Nilsson; J Brunner; Neil E Hoffman; Klaas J van Wijk
Interactions of ribosome nascent chain complexes of the chloroplast-encoded D1 thylakoid membrane protein with cpSRP54.
The EMBO journal 1999;18(3):733-42.
1998: M L Pilgrim; Klaas J van Wijk; D H Parry; D A Sy; Neil E Hoffman
Expression of a dominant negative form of cpSRP54 inhibits chloroplast biogenesis in Arabidopsis.
The Plant journal : for cell and molecular biology 1998;13(2):177-86.
1997: R Kettunen; Saijaliisa Pursiheimo; Eevi Rintamäki; Klaas J van Wijk; Eva-Mari Aro
Transcriptional and translational adjustments of psbA gene expression in mature chloroplasts during photoinhibition and subsequent repair of photosystem II.
European journal of biochemistry / FEBS 1997;247(1):441-8.
1997: Klaas J van Wijk; M Roobol-Boza; R Kettunen; Bertil Andersson; Eva-Mari Aro
Synthesis and assembly of the D1 protein into photosystem II: processing of the C-terminus and identification of the initial assembly partners and complexes during photosystem II repair.
Biochemistry 1997;36(20):6178-86.
1996: Klaas J van Wijk; L Eichacker
Light is required for efficient translation elongation and subsequent integration of the D1-protein into photosystem II.
FEBS letters 1996;388(2-3):89-93.
1996: Klaas J van Wijk; Bertil Andersson; Eva-Mari Aro
Kinetic resolution of the incorporation of the D1 protein into photosystem II and localization of assembly intermediates in thylakoid membranes of spinach chloroplasts.
The Journal of biological chemistry 1996;271(16):9627-36.
1995: Klaas J van Wijk; S Bingsmark; Eva-Mari Aro; Bertil Andersson
In vitro synthesis and assembly of photosystem II core proteins. The D1 protein can be incorporated into photosystem II in isolated chloroplasts and thylakoids.
The Journal of biological chemistry 1995;270(43):25685-95.
1994: Klaas J van Wijk; L O Nilsson; Stenbjörn Styring
Synthesis of reaction center proteins and reactivation of redox components during repair of photosystem II after light-induced inactivation.
The Journal of biological chemistry 1994;269(45):28382-92.
1994: R A Roffey; Klaas J van Wijk; R T Sayre; Stenbjörn Styring
Spectroscopic characterization of tyrosine-Z in histidine 190 mutants of the D1 protein in photosystem II (PSII) in Chlamydomonas reinhardtii. Implications for the structural model of the donor side of PSII.
The Journal of biological chemistry 1994;269(7):5115-21.