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Ilpo Vattulainen

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Sanja Pöyry; Marcin Sarewicz; Ilpo Vattulainen; Oana Cramariuc; Karol Kaszuba; Artur Osyczka; Pekka A Postila; Tomasz Róg
Atomistic simulations indicate cardiolipin to have an integral role in the structure of the cytochrome bc1 complex.
Pekka A Postila; Karol Kaszuba; Artur Osyczka; Marcin Sarewicz; Ilpo Vattulainen; Tomasz Róg
Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations.
Jelena Telenius; Juha M Holopainen; Artturi Koivuniemi; Pipsa Kulovesi; Ilpo Vattulainen
Role of neutral lipids in tear fluid lipid layer: coarse-grained simulation study.

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2013: Sanja Pöyry; Marcin Sarewicz; Ilpo Vattulainen; Oana Cramariuc; Karol Kaszuba; Artur Osyczka; Pekka A Postila; Tomasz Róg
Atomistic simulations indicate cardiolipin to have an integral role in the structure of the cytochrome bc1 complex.
Biochimica et biophysica acta 2013;1827(6):769-78.
2013: Pekka A Postila; Karol Kaszuba; Artur Osyczka; Marcin Sarewicz; Ilpo Vattulainen; Tomasz Róg
Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations.
Biochimica et biophysica acta 2013;1827(6):761-8.
2012: Jelena Telenius; Juha M Holopainen; Artturi Koivuniemi; Pipsa Kulovesi; Ilpo Vattulainen
Role of neutral lipids in tear fluid lipid layer: coarse-grained simulation study.
Langmuir : the ACS journal of surfaces and colloids 2012;28(49):17092-100.
2012: Oana Cramariuc; Matti Javanainen; Luca Monticelli; Anna V Polishchuk; Tomasz Rog; Ilpo Vattulainen
Mechanism for translocation of fluoroquinolones across lipid membranes.
Biochimica et biophysica acta 2012;1818(11):2563-71.
2012: Luca Monticelli; Adam Orlowski; Jonathan Barnoud; Ilpo Vattulainen
Interaction of C70 fullerene with the Kv1.2 potassium channel.
Physical chemistry chemical physics : PCCP 2012;14(36):12526-33.
2012: O H Samuli Ollila; Artturi Koivuniemi; Antti Lamberg; Maria Lehtivaara; Ilpo Vattulainen
Interfacial tension and surface pressure of high density lipoprotein, low density lipoprotein, and related lipid droplets.
Biophysical journal 2012;103(6):1236-44.
2012: Antti H Rantamäki; Ilpo Vattulainen; Matti Javanainen; Juha M Holopainen
Do lipids retard the evaporation of the tear fluid?
Investigative ophthalmology & visual science 2012;53(10):6442-7.
2012: Adam Orłowski; Marta Pasenkiewicz-Gierula; alex bunker; Michał Grzybek; Pekka T Männistö; Ilpo Vattulainen; Tomasz Róg
Strong preferences of dopamine and l-dopa towards lipid head group: importance of lipid composition and implication for neurotransmitter metabolism.
Journal of neurochemistry 2012;122(4):681-90.
2012: Artturi Koivuniemi; Petri T Kovanen; Ilpo Vattulainen; Timo Vuorela; Marja T Hyvönen
Lipid exchange mechanism of the cholesteryl ester transfer protein clarified by atomistic and coarse-grained simulations.
PLoS computational biology 2012;8(1):e1002299.
2011: Adam Orłowski; Marta Pasenkiewicz-Gierula; Alex Bunker; Aniket Magarkar; Jean-François St-Pierre; Ilpo Vattulainen; Tomasz Róg
Properties of the membrane binding component of catechol-O-methyltransferase revealed by atomistic molecular dynamics simulations.
The journal of physical chemistry. B 2011;115(46):13541-50.
2011: Hermann-Josef Kaiser; Daniel Lingwood; Thomas K M Nyholm; Tomasz Róg; Wengang Chai; Ten Feizi; Ilpo Vattulainen; Adam Orłowski; Kai Simons
Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(40):16628-33.
2011: Kirsi H Pietiläinen; Aila Rissanen; Sergio Rodriguez-Cuenca; Tomasz Róg; Anna-Liisa Ruskeepää; Tuulikki Seppänen-Laakso; Chong Yew Tan; Jing Tang; Ilpo Vattulainen; Vidya Velagapudi; antonio vidal-puig; Sam Virtue; Laxman Yetukuri; Hannele Yki-Järvinen; Sandra Castillo; Peddinti Gopalacharyulu; Tuulia Hyötyläinen; Jaakko Kaprio; Arkadiusz Maciejewski; Jussi Naukkarinen; Perttu S Niemelä; Heli Nygren; Matej Orešič
Association of lipidome remodeling in the adipocyte membrane with acquired obesity in humans.
PLoS biology 2011;9(6):e1000623.
2011: Daniel Lingwood; Beth Binnington; Tomasz Róg; Ilpo Vattulainen; Michal Grzybek; Unal Coskun; Clifford A Lingwood; Kai Simons
Cholesterol modulates glycolipid conformation and receptor activity.
Nature chemical biology 2011;7(5):260-2.
2011: Antti H Rantamäki; Jelena Telenius; Artturi Koivuniemi; Ilpo Vattulainen; Juha M Holopainen
Lessons from the biophysics of interfaces: lung surfactant and tear fluid.
Progress in retinal and eye research 2011;30(3):204-15.
2011: Sami Paavilainen; Tomasz Róg; Ilpo Vattulainen
Analysis of twisting of cellulose nanofibrils in atomistic molecular dynamics simulations.
The journal of physical chemistry. B 2011;115(14):3747-55.
2011: O H Samuli Ollila; Martti Louhivuori; Siewert J Marrink; Ilpo Vattulainen
Protein shape change has a major effect on the gating energy of a mechanosensitive channel.
Biophysical journal 2011;100(7):1651-9.
2011: Ilpo Vattulainen; Tomasz Rog
Lipid simulations: a perspective on lipids in action.
Cold Spring Harbor perspectives in biology 2011;3(4):.
2011: Anders Björkbom; Tomasz Róg; Pasi Kankaanpää; Daniel Lindroos; Karol Kaszuba; Mayuko Kurita; Shou Yamaguchi; Tetsuya Yamamoto; Shishir Jaikishan; Lassi Paavolainen; Joacim Päivärinne; Thomas K M Nyholm; Shigeo Katsumura; Ilpo Vattulainen; J Peter Slotte
N- and O-methylation of sphingomyelin markedly affects its membrane properties and interactions with cholesterol.
Biochimica et biophysica acta 2011;1808(4):1179-86.
2011: Laxman Yetukuri; Marja-Riitta Taskinen; Ilpo Vattulainen; Anne Hiukka; Ilkka Huopaniemi; Matti Jauhiainen; Samuel Kaski; Artturi Koivuniemi; Marianna Maranghi; Heli Nygren; Matej Orešič
High density lipoprotein structural changes and drug response in lipidomic profiles following the long-term fenofibrate therapy in the FIELD substudy.
PloS one 2011;6(8):e23589.
2010: Anders Björkbom; Tomasz Róg; Karol Kaszuba; Mayuko Kurita; Shou Yamaguchi; Max Lönnfors; Thomas K M Nyholm; Ilpo Vattulainen; Shigeo Katsumura; J Peter Slotte
Effect of sphingomyelin headgroup size on molecular properties and interactions with cholesterol.
Biophysical journal 2010;99(10):3300-8.
2010: Pipsa Kulovesi; Jelena Telenius; Artturi Koivuniemi; Gerald Brezesinski; Antti Rantamäki; Tapani Viitala; Esa Puukilainen; Mikko Ritala; Susanne K Wiedmer; Ilpo Vattulainen; Juha M Holopainen
Molecular organization of the tear fluid lipid layer.
Biophysical journal 2010;99(8):2559-67.
2010: Andrey A Gurtovenko; Jamshed Anwar; Ilpo Vattulainen
Defect-mediated trafficking across cell membranes: insights from in silico modeling.
Chemical reviews 2010;110(10):6077-103.
2010: Matti Javanainen; Luca Monticelli; Jorge Bernardino de la Serna; Ilpo Vattulainen
Free volume theory applied to lateral diffusion in Langmuir monolayers: atomistic simulations for a protein-free model of lung surfactant.
Langmuir : the ACS journal of surfaces and colloids 2010;26(19):15436-44.
2010: Laxman Yetukuri; Sanni Söderlund; Artturi Koivuniemi; Tuulikki Seppänen-Laakso; Perttu S Niemelä; Marja Hyvönen; Marja-Riitta Taskinen; Ilpo Vattulainen; Matti Jauhiainen; Matej Oresic
Composition and lipid spatial distribution of HDL particles in subjects with low and high HDL-cholesterol.
Journal of lipid research 2010;51(8):2341-51.
2010: Karol Kaszuba; Tomasz Róg; Krzysztof Bryl; Ilpo Vattulainen; mikko karttunen
Molecular dynamics simulations reveal fundamental role of water as factor determining affinity of binding of beta-blocker nebivolol to beta(2)-adrenergic receptor.
The journal of physical chemistry. B 2010;114(25):8374-86.
2010: Anette Hall; Tomasz Róg; mikko karttunen; Ilpo Vattulainen
Role of glycolipids in lipid rafts: a view through atomistic molecular dynamics simulations with galactosylceramide.
The journal of physical chemistry. B 2010;114(23):7797-807.
2010: Perttu S Niemelä; Markus S Miettinen; Luca Monticelli; Henrik Hammaren; Pär Bjelkmar; Teemu Murtola; Erik Lindahl; Ilpo Vattulainen
Membrane proteins diffuse as dynamic complexes with lipids.
Journal of the American Chemical Society 2010;132(22):7574-5.
2010: Petri Sane; Filip Tuomisto; Susanne K Wiedmer; Tuula Nyman; Ilpo Vattulainen; Juha M Holopainen
Temperature-induced structural transition in-situ in porcine lens--changes observed in void size distribution.
Biochimica et biophysica acta 2010;1798(5):958-65.
2010: Miroslava Franová; Jarmila Repáková; Pavla Capková; Juha M Holopainen; Ilpo Vattulainen
Effects of DPH on DPPC-cholesterol membranes with varying concentrations of cholesterol: from local perturbations to limitations in fluorescence anisotropy experiments.
The journal of physical chemistry. B 2010;114(8):2704-11.
2010: Cristiano L Dias; Tapio Ala-Nissila; Jirasak Wong-ekkabut; Ilpo Vattulainen; Martin Grant; Mikko Karttunen
The hydrophobic effect and its role in cold denaturation.
Cryobiology 2010;60(1):91-9.
2010: Timo Vuorela; Andrea Catte; Perttu S Niemelä; Anette Hall; Marja T Hyvönen; Siewert J Marrink; mikko karttunen; Ilpo Vattulainen
Role of lipids in spheroidal high density lipoproteins.
PLoS computational biology 2010;6(10):e1000964.
2010: Hector Martinez-Seara; Tomasz Róg; mikko karttunen; Ilpo Vattulainen; Ramon Reigada
Cholesterol induces specific spatial and orientational order in cholesterol/phospholipid membranes.
PloS one 2010;5(6):e11162.
2010: Touko Apajalahti; Perttu Niemelä; Praveen Nedumpully Govindan; Markus S Miettinen; Emppu Salonen; Siewert J Marrink; Ilpo Vattulainen
Concerted diffusion of lipids in raft-like membranes.
Faraday discussions 2010;144():411-30; discussion 445-81.
2009: Sanja Pöyry; Tomasz Róg; Mikko Karttunen; Ilpo Vattulainen
Mitochondrial membranes with mono- and divalent salt: changes induced by salt ions on structure and dynamics.
The journal of physical chemistry. B 2009;113(47):15513-21.
2009: Teemu Murtola; Mikko Karttunen; Ilpo Vattulainen
Systematic coarse graining from structure using internal states: application to phospholipid/cholesterol bilayer.
The Journal of chemical physics 2009;131(5):055101.
2009: Markus S Miettinen; Andrey A Gurtovenko; Ilpo Vattulainen; Mikko Karttunen
Ion dynamics in cationic lipid bilayer systems in saline solutions.
The journal of physical chemistry. B 2009;113(27):9226-34.
2009: Hector Martinez-Seara; Tomasz Róg; mikko karttunen; Ilpo Vattulainen; Ramon Reigada
Why is the sn-2 chain of monounsaturated glycerophospholipids usually unsaturated whereas the sn-1 chain is saturated? Studies of 1-stearoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (SOPC) and 1-oleoyl-2-stearoyl-sn-glycero-3-phosphatidylcholine (OSPC) membranes with and without cholesterol.
The journal of physical chemistry. B 2009;113(24):8347-56.
2009: Andrey A Gurtovenko; Ilpo Vattulainen
Calculation of the electrostatic potential of lipid bilayers from molecular dynamics simulations: methodological issues.
The Journal of chemical physics 2009;130(21):215107.
2009: Andrey A Gurtovenko; Ilpo Vattulainen
Intrinsic potential of cell membranes: opposite effects of lipid transmembrane asymmetry and asymmetric salt ion distribution.
The journal of physical chemistry. B 2009;113(20):7194-8.
2009: Artturi Koivuniemi; Mikko Heikelä; Petri T Kovanen; Ilpo Vattulainen; Marja T Hyvönen
Atomistic simulations of phosphatidylcholines and cholesteryl esters in high-density lipoprotein-sized lipid droplet and trilayer: clues to cholesteryl ester transport and storage.
Biophysical journal 2009;96(10):4099-108.
2009: Mikko Karttunen; Mikko P Haataja; Matti Säily; Ilpo Vattulainen; Juha M Holopainen
Lipid domain morphologies in phosphatidylcholine-ceramide monolayers.
Langmuir : the ACS journal of surfaces and colloids 2009;25(8):4595-600.
2009: Teemu Murtola; alex bunker; Ilpo Vattulainen; Markus Deserno; Mikko Karttunen
Multiscale modeling of emergent materials: biological and soft matter.
Physical chemistry chemical physics : PCCP 2009;11(12):1869-92.
2009: Tomasz Róg; Hector Martinez-Seara; Nana Munck; Matej Oresic; Mikko Karttunen; Ilpo Vattulainen
Role of cardiolipins in the inner mitochondrial membrane: insight gained through atom-scale simulations.
The journal of physical chemistry. B 2009;113(11):3413-22.
2009: Michael R Morrow; Anne Helle; Joshua Perry; Ilpo Vattulainen; Susanne K Wiedmer; Juha M Holopainen
Ceramide-1-phosphate, in contrast to ceramide, is not segregated into lateral lipid domains in phosphatidylcholine bilayers.
Biophysical journal 2009;96(6):2216-26.
2009: O H Samuli Ollila; H Jelger Risselada; Martti Louhivuori; Erik Lindahl; Ilpo Vattulainen; Siewert J Marrink
3D pressure field in lipid membranes and membrane-protein complexes.
Physical review letters 2009;102(7):078101.
2009: Petri Sane; Emppu Salonen; Emma Falck; Jarmila Repakova; Filip Tuomisto; Juha M Holopainen; Ilpo Vattulainen
Probing biomembranes with positrons.
The journal of physical chemistry. B 2009;113(7):1810-2.
2009: Jelena Telenius; Ilpo Vattulainen; Luca Monticelli
Visualization of complex processes in lipid systems using computer simulations and molecular graphics.
Methods in molecular biology (Clifton, N.J.) 2009;580():317-38.
2009: Kirsi Pakkanen; Emppu Salonen; Anna R Mäkelä; Christian Oker-Blom; Ilpo Vattulainen; Matti Vuento
Desipramine induces disorder in cholesterol-rich membranes: implications for viral trafficking.
Physical biology 2009;6(4):046004.
2009: Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; Mikko Karttunen
Ordering effects of cholesterol and its analogues.
Biochimica et biophysica acta 2009;1788(1):97-121.
2009: Perttu S Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Atom-scale molecular interactions in lipid raft mixtures.
Biochimica et biophysica acta 2009;1788(1):122-35.
2008: Anette Hall; Jarmila Repakova; Ilpo Vattulainen
Modeling of the triglyceride-rich core in lipoprotein particles.
The journal of physical chemistry. B 2008;112(44):13772-82.
2008: Emppu Salonen; Sijie Lin; Michelle L Reid; Marcus Allegood; Xi Wang; Apparao M Rao; Ilpo Vattulainen; Pu-Chun Ke
Real-time translocation of fullerene reveals cell contraction.
Small (Weinheim an der Bergstrasse, Germany) 2008;4(11):1986-92.
2008: Maarit Hölttä-Vuori; Riikka-Liisa Uronen; Jarmila Repakova; Emppu Salonen; Ilpo Vattulainen; Pertti Panula; Zaiguo Li; Robert Bittman; Elina Ikonen
BODIPY-cholesterol: a new tool to visualize sterol trafficking in living cells and organisms.
Traffic (Copenhagen, Denmark) 2008;9(11):1839-49.
2008: Tomasz Róg; Ilpo Vattulainen; Maurice Jansen; Elina Ikonen; Mikko Karttunen
Comparison of cholesterol and its direct precursors along the biosynthetic pathway: effects of cholesterol, desmosterol and 7-dehydrocholesterol on saturated and unsaturated lipid bilayers.
The Journal of chemical physics 2008;129(15):154508.
2008: Hector Martinez-Seara; Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; mikko karttunen; Ramon Reigada
Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position.
Biophysical journal 2008;95(7):3295-305.
2008: Hector Martinez-Seara; Tomasz Róg; mikko karttunen; Ramon Reigada; Ilpo Vattulainen
Influence of cis double-bond parametrization on lipid membrane properties: how seemingly insignificant details in force-field change even qualitative trends.
The Journal of chemical physics 2008;129(10):105103.
2008: Wei Zhao; Tomasz Róg; Andrey A Gurtovenko; Ilpo Vattulainen; mikko karttunen
Role of phosphatidylglycerols in the stability of bacterial membranes.
Biochimie 2008;90(6):930-8.
2008: Teemu Murtola; Ilpo Vattulainen; Emma Falck
Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations.
Proteins 2008;71(4):1995-2011.
2008: Jan A Aström; P B Sunil Kumar; Ilpo Vattulainen; mikko karttunen
Strain hardening, avalanches, and strain softening in dense cross-linked actin networks.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;77(5 Pt 1):051913.
2008: Andrey A Gurtovenko; Ilpo Vattulainen
Membrane potential and electrostatics of phospholipid bilayers with asymmetric transmembrane distribution of anionic lipids.
The journal of physical chemistry. B 2008;112(15):4629-34.
2008: Emma Terama; O H Samuli Ollila; Emppu Salonen; Amy C Rowat; Christa Trandum; Peter Westh; Michael Patra; mikko karttunen; Ilpo Vattulainen
Influence of ethanol on lipid membranes: from lateral pressure profiles to dynamics and partitioning.
The journal of physical chemistry. B 2008;112(13):4131-9.
2008: Cristiano Dias; Tapio Ala-Nissila; mikko karttunen; Ilpo Vattulainen; Martin Grant
Microscopic mechanism for cold denaturation.
Physical review letters 2008;100(11):118101.
2008: Andrea Catte; James C Patterson; Denys Bashtovyy; Martin K Jones; Feifei Gu; Ling Li; Aldo Rampioni; Durba Sengupta; Timo Vuorela; Perttu S Niemelä; mikko karttunen; Siewert Jan Marrink; Ilpo Vattulainen; Jere P Segrest
Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations.
Biophysical journal 2008;94(6):2306-19.
2008: Sanja Pöyry; Tomasz Róg; mikko karttunen; Ilpo Vattulainen
Significance of cholesterol methyl groups.
The journal of physical chemistry. B 2008;112(10):2922-9.
2008: Andrey A Gurtovenko; Ilpo Vattulainen
Effect of NaCl and KCl on phosphatidylcholine and phosphatidylethanolamine lipid membranes: insight from atomic-scale simulations for understanding salt-induced effects in the plasma membrane.
The journal of physical chemistry. B 2008;112(7):1953-62.
2008: Tomasz Róg; Lorna M Stimson; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; mikko karttunen
Replacing the cholesterol hydroxyl group with the ketone group facilitates sterol flip-flop and promotes membrane fluidity.
The journal of physical chemistry. B 2008;112(7):1946-52.
2008: Emma Falck; Tomasz Róg; mikko karttunen; Ilpo Vattulainen
Lateral diffusion in lipid membranes through collective flows.
Journal of the American Chemical Society 2008;130(1):44-5.
2007: Andrey A Gurtovenko; Ilpo Vattulainen
Molecular mechanism for lipid flip-flops.
The journal of physical chemistry. B 2007;111(48):13554-9.
2007: Hector Martinez-Seara; Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; mikko karttunen; Ramon Reigada
Effect of double bond position on lipid bilayer properties: insight through atomistic simulations.
The journal of physical chemistry. B 2007;111(38):11162-8.
2007: Tomasz Róg; Ilpo Vattulainen; alex bunker; mikko karttunen
Glycolipid membranes through atomistic simulations: effect of glucose and galactose head groups on lipid bilayer properties.
The journal of physical chemistry. B 2007;111(34):10146-54.
2007: O H Samuli Ollila; Tomasz Róg; mikko karttunen; Ilpo Vattulainen
Role of sterol type on lateral pressure profiles of lipid membranes affecting membrane protein functionality: Comparison between cholesterol, desmosterol, 7-dehydrocholesterol and ketosterol.
Journal of structural biology 2007;159(2):311-23.
2007: Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; mikko karttunen
What happens if cholesterol is made smoother: importance of methyl substituents in cholesterol ring structure on phosphatidylcholine-sterol interaction.
Biophysical journal 2007;92(10):3346-57.
2007: Andrey A Gurtovenko; Ilpo Vattulainen
Lipid transmembrane asymmetry and intrinsic membrane potential: two sides of the same coin.
Journal of the American Chemical Society 2007;129(17):5358-9.
2007: Jana Curdová; Pavla Capková; Jaromír Plásek; Jarmila Repáková; Ilpo Vattulainen
Free pyrene probes in gel and fluid membranes: perspective through atomistic simulations.
The journal of physical chemistry. B 2007;111(14):3640-50.
2007: Samuli Ollila; Marja T Hyvönen; Ilpo Vattulainen
Polyunsaturation in lipid membranes: dynamic properties and lateral pressure profiles.
The journal of physical chemistry. B 2007;111(12):3139-50.
2007: M Masín; Ilpo Vattulainen; Tapio Ala-Nissila; Z Chvoj
Interplay between steps and nonequilibrium effects in surface diffusion for a lattice-gas model of OW(110).
The Journal of chemical physics 2007;126(11):114705.
2007: Andrey A Gurtovenko; Ilpo Vattulainen
Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance.
Biophysical journal 2007;92(6):1878-90.
2007: Petri Nikunen; Ilpo Vattulainen; mikko karttunen
Reptational dynamics in dissipative particle dynamics simulations of polymer melts.
Physical review. E, Statistical, nonlinear, and soft matter physics 2007;75(3 Pt 2):036713.
2007: Perttu S Niemelä; Samuli Ollila; Marja T Hyvönen; mikko karttunen; Ilpo Vattulainen
Assessing the nature of lipid raft membranes.
PLoS computational biology 2007;3(2):e34.
2007: Teemu Murtola; Emma Falck; mikko karttunen; Ilpo Vattulainen
Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints.
The Journal of chemical physics 2007;126(7):075101.
2007: Wei Zhao; Tomasz Róg; Andrey A Gurtovenko; Ilpo Vattulainen; mikko karttunen
Atomic-scale structure and electrostatics of anionic palmitoyloleoylphosphatidylglycerol lipid bilayers with Na+ counterions.
Biophysical journal 2007;92(4):1114-24.
2007: Jussi Aittoniemi; Perttu S Niemelä; Marja T Hyvönen; mikko karttunen; Ilpo Vattulainen
Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.
Biophysical journal 2007;92(4):1125-37.
2007: Teemu Murtola; Mikko Kupiainen; Emma Falck; Ilpo Vattulainen
Conformational analysis of lipid molecules by self-organizing maps.
The Journal of chemical physics 2007;126(5):054707.
2006: Jussi Aittoniemi; Tomasz Róg; Perttu S Niemelä; Marta Pasenkiewicz-Gierula; mikko karttunen; Ilpo Vattulainen
Tilt: major factor in sterols' ordering capability in membranes.
The journal of physical chemistry. B 2006;110(51):25562-4.
2006: Teemu Murtola; Tomasz Róg; Emma Falck; mikko karttunen; Ilpo Vattulainen
Transient ordered domains in single-component phospholipid bilayers.
Physical review letters 2006;97(23):238102.
2006: Emma Falck; Jari T Hautala; mikko karttunen; Paavo K J Kinnunen; Michael Patra; Heikki Saaren-Seppälä; Ilpo Vattulainen; Susanne K Wiedmer; Juha M Holopainen
Interaction of fusidic acid with lipid membranes: Implications to the mechanism of antibiotic activity.
Biophysical journal 2006;91(5):1787-99.
2006: Jarmila Repáková; Juha M Holopainen; mikko karttunen; Ilpo Vattulainen
Influence of pyrene-labeling on fluid lipid membranes.
The journal of physical chemistry. B 2006;110(31):15403-10.
2006: Mikko Heikelä; Ilpo Vattulainen; Marja T Hyvönen
Atomistic simulation studies of cholesteryl oleates: model for the core of lipoprotein particles.
Biophysical journal 2006;90(7):2247-57.
2006: Andrey A Gurtovenko; Sergey V Lyulin; mikko karttunen; Ilpo Vattulainen
Molecular dynamics study of charged dendrimers in salt-free solution: effect of counterions.
The Journal of chemical physics 2006;124(9):94904.
2006: Michael Patra; Emppu Salonen; Emma Terama; Ilpo Vattulainen; Roland Faller; Bryan W Lee; Juha M Holopainen; mikko karttunen
Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers.
Biophysical journal 2006;90(4):1121-35.
2006: Perttu S Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Influence of chain length and unsaturation on sphingomyelin bilayers.
Biophysical journal 2006;90(3):851-63.
2006: Seppo Vainio; Maurice Jansen; Mirkka Koivusalo; Tomasz Róg; mikko karttunen; Ilpo Vattulainen; Elina Ikonen
Significance of sterol structural specificity. Desmosterol cannot replace cholesterol in lipid rafts.
The Journal of biological chemistry 2006;281(1):348-55.
2005: Andrey A Gurtovenko; Ilpo Vattulainen
Pore formation coupled to ion transport through lipid membranes as induced by transmembrane ionic charge imbalance: atomistic molecular dynamics study.
Journal of the American Chemical Society 2005;127(50):17570-1.
2005: Andrey A Gurtovenko; Markus Miettinen; mikko karttunen; Ilpo Vattulainen
Effect of monovalent salt on cationic lipid membranes as revealed by molecular dynamics simulations.
The journal of physical chemistry. B 2005;109(44):21126-34.
2005: E Salonen; E Terama; Ilpo Vattulainen; mikko karttunen
Dielectrophoresis of nanocolloids: a molecular dynamics study.
The European physical journal. E, Soft matter 2005;18(2):133-42.
2005: Olli Punkkinen; Per Lyngs Hansen; Ling Miao; Ilpo Vattulainen
DNA overstretching transition: ionic strength effects.
Biophysical journal 2005;89(2):967-78.
2005: Emma Falck; Michael Patra; mikko karttunen; Marja T Hyvönen; Ilpo Vattulainen
Response to comment by Almeida et al.: free area theories for lipid bilayers--predictive or not?
Biophysical journal 2005;89(1):745-52.
2005: M Masín; Ilpo Vattulainen; Tapio Ala-Nissila; Z Chvoj
Nonequilibrium effects in diffusion of interacting particles on vicinal surfaces.
The Journal of chemical physics 2005;122(21):214728.
2005: Jarmila Repáková; Juha M Holopainen; Michael R Morrow; Mark C McDonald; Pavla Capková; Ilpo Vattulainen
Influence of DPH on the structure and dynamics of a DPPC bilayer.
Biophysical journal 2005;88(5):3398-410.
2005: Olli Punkkinen; Emma Falck; Ilpo Vattulainen; Tapio Ala-Nissila
Dynamics and scaling of polymers in a dilute solution: analytical treatment in two and higher dimensions.
The Journal of chemical physics 2005;122(9):094904.
2005: Tomasz Rog; Ilpo Vattulainen; mikko karttunen
Modeling glycolipids: take one.
Cellular & molecular biology letters 2005;10(4):625-30.
2005: Lorna M Stimson; Ilpo Vattulainen; Tomasz Róg; mikko karttunen
Exploring the effect of xenon on biomembranes.
Cellular & molecular biology letters 2005;10(4):563-9.
2004: Emma Falck; Michael Patra; mikko karttunen; Marja T Hyvönen; Ilpo Vattulainen
Impact of cholesterol on voids in phospholipid membranes.
The Journal of chemical physics 2004;121(24):12676-89.
2004: Teemu Murtola; Emma Falck; Michael Patra; mikko karttunen; Ilpo Vattulainen
Coarse-grained model for phospholipid/cholesterol bilayer.
The Journal of chemical physics 2004;121(18):9156-65.
2004: Perttu S Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Structure and dynamics of sphingomyelin bilayer: insight gained through systematic comparison to phosphatidylcholine.
Biophysical journal 2004;87(5):2976-89.
2004: Emma Falck; Michael Patra; mikko karttunen; Marja T Hyvönen; Ilpo Vattulainen
Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers.
Biophysical journal 2004;87(2):1076-91.
2004: Andrey A Gurtovenko; Michael Patra; mikko karttunen; Ilpo Vattulainen
Cationic DMPC/DMTAP lipid bilayers: molecular dynamics study.
Biophysical journal 2004;86(6):3461-72.
2004: Emma Falck; Jouko Lahtinen; Ilpo Vattulainen; Tapio Ala-Nissila
Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions.
The European physical journal. E, Soft matter 2004;13(3):267-75.
2004: Martin J Zuckermann; John H Ipsen; Ling Miao; Ole G Mouritsen; Morten Nielsen; James Polson; Jenifer Thewalt; Ilpo Vattulainen; Hong Zhu
Modeling lipid-sterol bilayers: applications to structural evolution, lateral diffusion, and rafts.
Methods in enzymology 2004;383():198-229.
2003: Emma Falck; Olli Punkkinen; Ilpo Vattulainen; Tapio Ala-Nissila
Dynamics and scaling of two-dimensional polymers in a dilute solution.
Physical review. E, Statistical, nonlinear, and soft matter physics 2003;68(5 Pt 1):050102.
2003: Michael Patra; mikko karttunen; Marja T Hyvönen; Emma Falck; P Lindqvist; Ilpo Vattulainen
Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions.
Biophysical journal 2003;84(6):3636-45.