Username

Password

Forgot Password?

Preview

Sign-in free and Explore the Exciting World of BiomedExperts:

Over 1.500.000 Profiles
More than 1.800 Organizations worldwide
State of the Art Network Visualizations

Manage your own Profile
Locate Experts in your Country/Region
Locate Experts in your 1. and 2. Level Network
Connect to Experts Worldwide

NetworkView

Ilpo Vattulainen

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Anatomy

Activities & Behaviors

Computer Simulation

Concepts & Ideas

Chemicals & Drugs

Physiology

Membrane Fluidity

Phenomena

Genes & Molecular Sequences

Molecular Structure

Sign-in to see full Profile

Network (preview)

Co-Publications
Name
37
karttunen, mikko
19
Róg, Tomasz
14
Falck, Emma
14
Gurtovenko, Andrey
12
Hyvönen, Marja
8
Patra, Michael
7
Murtola, Teemu
7
Niemelä, Perttu
6
Pasenkiewicz-Gierula, Marta
6
Ala-Nissila, Tapio
4
Holopainen, Juha
4
Reigada, Ramon
3
Repáková, Jarmila
3
Punkkinen, Olli
2
Aittoniemi, Jussi

Sign-in to see all Coauthors

Publications

TOP 3
Murtola Teemu; Karttunen Mikko; Vattulainen Ilpo
Systematic coarse graining from structure using internal states: application to phospholipid/cholesterol bilayer.
Miettinen Markus S; Gurtovenko Andrey A; Vattulainen Ilpo; Karttunen Mikko
Ion dynamics in cationic lipid bilayer systems in saline solutions.
Gurtovenko Andrey A; Vattulainen Ilpo
Calculation of the electrostatic potential of lipid bilayers from molecular dynamics simulations: methodological issues.

Sign-in to see all Publications

Sign in free and see...

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the visualized research activity
of experts around the globe

Sign-in to see more

Geonetwork of Ilpo Vattulainen (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

Sign-in to see more

All Publications

2009: Murtola Teemu; Karttunen Mikko; Vattulainen Ilpo
Systematic coarse graining from structure using internal states: application to phospholipid/cholesterol bilayer.
The Journal of chemical physics 2009;131(5):055101.
2009: Miettinen Markus S; Gurtovenko Andrey A; Vattulainen Ilpo; Karttunen Mikko
Ion dynamics in cationic lipid bilayer systems in saline solutions.
The journal of physical chemistry. B 2009;113(27):9226-34.
2009: Gurtovenko Andrey A; Vattulainen Ilpo
Calculation of the electrostatic potential of lipid bilayers from molecular dynamics simulations: methodological issues.
The Journal of chemical physics 2009;130(21):215107.
2009: Martinez-Seara Hector; Róg Tomasz; Karttunen Mikko; Vattulainen Ilpo; Reigada Ramon
Why is the sn-2 chain of monounsaturated glycerophospholipids usually unsaturated whereas the sn-1 chain is saturated? Studies of 1-stearoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (SOPC) and 1-oleoyl-2-stearoyl-sn-glycero-3-phosphatidylcholine (OSPC) membranes with and without cholesterol.
The journal of physical chemistry. B 2009;113(24):8347-56.
2009: Koivuniemi Artturi; Heikelä Mikko; Kovanen Petri T; Vattulainen Ilpo; Hyvönen Marja T
Atomistic simulations of phosphatidylcholines and cholesteryl esters in high-density lipoprotein-sized lipid droplet and trilayer: clues to cholesteryl ester transport and storage.
Biophysical journal 2009;96(10):4099-108.
2009: Gurtovenko Andrey A; Vattulainen Ilpo
Intrinsic potential of cell membranes: opposite effects of lipid transmembrane asymmetry and asymmetric salt ion distribution.
The journal of physical chemistry. B 2009;113(20):7194-8.
2009: Karttunen Mikko; Haataja Mikko P; Säily Matti; Vattulainen Ilpo; Holopainen Juha M
Lipid domain morphologies in phosphatidylcholine-ceramide monolayers.
Langmuir : the ACS journal of surfaces and colloids 2009;25(8):4595-600.
2009: Morrow Michael R; Helle Anne; Perry Joshua; Vattulainen Ilpo; Wiedmer Susanne K; Holopainen Juha M
Ceramide-1-phosphate, in contrast to ceramide, is not segregated into lateral lipid domains in phosphatidylcholine bilayers.
Biophysical journal 2009;96(6):2216-26.
2009: Murtola Teemu; Bunker Alex; Vattulainen Ilpo; Deserno Markus; Karttunen Mikko
Multiscale modeling of emergent materials: biological and soft matter.
Physical chemistry chemical physics : PCCP 2009;11(12):1869-92.
2009: Róg Tomasz; Martinez-Seara Hector; Munck Nana; Oresic Matej; Karttunen Mikko; Vattulainen Ilpo
Role of cardiolipins in the inner mitochondrial membrane: insight gained through atom-scale simulations.
The journal of physical chemistry. B 2009;113(11):3413-22.
2009: Ollila O H Samuli; Risselada H Jelger; Louhivuori Martti; Lindahl Erik; Vattulainen Ilpo; Marrink Siewert J
3D pressure field in lipid membranes and membrane-protein complexes.
Physical review letters 2009;102(7):078101.
2009: Sane Petri; Salonen Emppu; Falck Emma; Repakova Jarmila; Tuomisto Filip; Holopainen Juha M; Vattulainen Ilpo
Probing biomembranes with positrons.
The journal of physical chemistry. B 2009;113(7):1810-2.
2009: Róg Tomasz; Pasenkiewicz-Gierula Marta; Vattulainen Ilpo; Karttunen Mikko
Ordering effects of cholesterol and its analogues.
Biochimica et biophysica acta 2009;1788(1):97-121.
2009: Niemelä Perttu S; Hyvönen Marja T; Vattulainen Ilpo
Atom-scale molecular interactions in lipid raft mixtures.
Biochimica et biophysica acta 2009;1788(1):122-35.
2009: Telenius Jelena; Vattulainen Ilpo; Monticelli Luca
Visualization of complex processes in lipid systems using computer simulations and molecular graphics.
Methods in molecular biology (Clifton, N.J.) 2009;580():317-38.
2009: Pakkanen Kirsi; Salonen Emppu; Mäkelä Anna R; Oker-Blom Christian; Vattulainen Ilpo; Vuento Matti
Desipramine induces disorder in cholesterol-rich membranes: implications for viral trafficking.
Physical biology 2009;6(4):46004.
2008: Salonen Emppu; Lin Sijie; Reid Michelle L; Allegood Marcus; Wang Xi; Rao Apparao M; Vattulainen Ilpo; Ke Pu Chun
Real-time translocation of fullerene reveals cell contraction.
Small (Weinheim an der Bergstrasse, Germany) 2008;4(11):1986-92.
2008: Hall Anette; Repakova Jarmila; Vattulainen Ilpo
Modeling of the triglyceride-rich core in lipoprotein particles.
The journal of physical chemistry. B 2008;112(44):13772-82.
2008: Hölttä-Vuori Maarit; Uronen Riikka-Liisa; Repakova Jarmila; Salonen Emppu; Vattulainen Ilpo; Panula Pertti; Li Zaiguo; Bittman Robert; Ikonen Elina
BODIPY-cholesterol: a new tool to visualize sterol trafficking in living cells and organisms.
Traffic (Copenhagen, Denmark) 2008;9(11):1839-49.
2008: Róg Tomasz; Vattulainen Ilpo; Jansen Maurice; Ikonen Elina; Karttunen Mikko
Comparison of cholesterol and its direct precursors along the biosynthetic pathway: effects of cholesterol, desmosterol and 7-dehydrocholesterol on saturated and unsaturated lipid bilayers.
The Journal of chemical physics 2008;129(15):154508.
2008: Martinez-Seara Hector; Róg Tomasz; Pasenkiewicz-Gierula Marta; Vattulainen Ilpo; Karttunen Mikko; Reigada Ramon
Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position.
Biophysical journal 2008;95(7):3295-305.
2008: Martinez-Seara Hector; Róg Tomasz; Karttunen Mikko; Reigada Ramon; Vattulainen Ilpo
Influence of cis double-bond parametrization on lipid membrane properties: how seemingly insignificant details in force-field change even qualitative trends.
The Journal of chemical physics 2008;129(10):105103.
2008: Zhao Wei; Róg Tomasz; Gurtovenko Andrey A; Vattulainen Ilpo; Karttunen Mikko
Role of phosphatidylglycerols in the stability of bacterial membranes.
Biochimie 2008;90(6):930-8.
2008: Murtola Teemu; Vattulainen Ilpo; Falck Emma
Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations.
Proteins 2008;71(4):1995-2011.
2008: Aström Jan A; Kumar P B Sunil; Vattulainen Ilpo; Karttunen Mikko
Strain hardening, avalanches, and strain softening in dense cross-linked actin networks.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;77(5 Pt 1):051913.
2008: Gurtovenko Andrey A; Vattulainen Ilpo
Membrane potential and electrostatics of phospholipid bilayers with asymmetric transmembrane distribution of anionic lipids.
The journal of physical chemistry. B 2008;112(15):4629-34.
2008: Terama Emma; Ollila O H Samuli; Salonen Emppu; Rowat Amy C; Trandum Christa; Westh Peter; Patra Michael; Karttunen Mikko; Vattulainen Ilpo
Influence of ethanol on lipid membranes: from lateral pressure profiles to dynamics and partitioning.
The journal of physical chemistry. B 2008;112(13):4131-9.
2008: Dias Cristiano L; Ala-Nissila Tapio; Karttunen Mikko; Vattulainen Ilpo; Grant Martin
Microscopic mechanism for cold denaturation.
Physical review letters 2008;100(11):118101.
2008: Pöyry Sanja; Róg Tomasz; Karttunen Mikko; Vattulainen Ilpo
Significance of cholesterol methyl groups.
The journal of physical chemistry. B 2008;112(10):2922-9.
2008: Catte Andrea; Patterson James C; Bashtovyy Denys; Jones Martin K; Gu Feifei; Li Ling; Rampioni Aldo; Sengupta Durba; Vuorela Timo; Niemelä Perttu; Karttunen Mikko; Marrink Siewert Jan; Vattulainen Ilpo; Segrest Jere P
Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations.
Biophysical journal 2008;94(6):2306-19.
2008: Gurtovenko Andrey A; Vattulainen Ilpo
Effect of NaCl and KCl on phosphatidylcholine and phosphatidylethanolamine lipid membranes: insight from atomic-scale simulations for understanding salt-induced effects in the plasma membrane.
The journal of physical chemistry. B 2008;112(7):1953-62.
2008: Róg Tomasz; Stimson Lorna M; Pasenkiewicz-Gierula Marta; Vattulainen Ilpo; Karttunen Mikko
Replacing the cholesterol hydroxyl group with the ketone group facilitates sterol flip-flop and promotes membrane fluidity.
The journal of physical chemistry. B 2008;112(7):1946-52.
2008: Falck Emma; Róg Tomasz; Karttunen Mikko; Vattulainen Ilpo
Lateral diffusion in lipid membranes through collective flows.
Journal of the American Chemical Society 2008;130(1):44-5.
2007: Gurtovenko Andrey A; Vattulainen Ilpo
Molecular mechanism for lipid flip-flops.
The journal of physical chemistry. B 2007;111(48):13554-9.
2007: Martinez-Seara Hector; Róg Tomasz; Pasenkiewicz-Gierula Marta; Vattulainen Ilpo; Karttunen Mikko; Reigada Ramon
Effect of double bond position on lipid bilayer properties: insight through atomistic simulations.
The journal of physical chemistry. B 2007;111(38):11162-8.
2007: Róg Tomasz; Vattulainen Ilpo; Bunker Alex; Karttunen Mikko
Glycolipid membranes through atomistic simulations: effect of glucose and galactose head groups on lipid bilayer properties.
The journal of physical chemistry. B 2007;111(34):10146-54.
2007: Samuli Ollila O H; Róg Tomasz; Karttunen Mikko; Vattulainen Ilpo
Role of sterol type on lateral pressure profiles of lipid membranes affecting membrane protein functionality: Comparison between cholesterol, desmosterol, 7-dehydrocholesterol and ketosterol.
Journal of structural biology 2007;159(2):311-23.
2007: Gurtovenko Andrey A; Vattulainen Ilpo
Lipid transmembrane asymmetry and intrinsic membrane potential: two sides of the same coin.
Journal of the American Chemical Society 2007;129(17):5358-9.
2007: Róg Tomasz; Pasenkiewicz-Gierula Marta; Vattulainen Ilpo; Karttunen Mikko
What happens if cholesterol is made smoother: importance of methyl substituents in cholesterol ring structure on phosphatidylcholine-sterol interaction.
Biophysical journal 2007;92(10):3346-57.
2007: Curdová Jana; Capková Pavla; Plásek Jaromír; Repáková Jarmila; Vattulainen Ilpo
Free pyrene probes in gel and fluid membranes: perspective through atomistic simulations.
The journal of physical chemistry. B 2007;111(14):3640-50.
2007: Nikunen Petri; Vattulainen Ilpo; Karttunen Mikko
Reptational dynamics in dissipative particle dynamics simulations of polymer melts.
Physical review. E, Statistical, nonlinear, and soft matter physics 2007;75(3 Pt 2):036713.
2007: Ollila Samuli; Hyvönen Marja T; Vattulainen Ilpo
Polyunsaturation in lipid membranes: dynamic properties and lateral pressure profiles.
The journal of physical chemistry. B 2007;111(12):3139-50.
2007: Masín M; Vattulainen I; Ala-Nissila T; Chvoj Z
Interplay between steps and nonequilibrium effects in surface diffusion for a lattice-gas model of OW(110).
The Journal of chemical physics 2007;126(11):114705.
2007: Gurtovenko Andrey A; Vattulainen Ilpo
Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance.
Biophysical journal 2007;92(6):1878-90.
2007: Murtola Teemu; Falck Emma; Karttunen Mikko; Vattulainen Ilpo
Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints.
The Journal of chemical physics 2007;126(7):075101.
2007: Niemelä Perttu S; Ollila Samuli; Hyvönen Marja T; Karttunen Mikko; Vattulainen Ilpo
Assessing the nature of lipid raft membranes.
PLoS computational biology 2007;3(2):e34.
2007: Murtola Teemu; Kupiainen Mikko; Falck Emma; Vattulainen Ilpo
Conformational analysis of lipid molecules by self-organizing maps.
The Journal of chemical physics 2007;126(5):054707.
2007: Zhao Wei; Róg Tomasz; Gurtovenko Andrey A; Vattulainen Ilpo; Karttunen Mikko
Atomic-scale structure and electrostatics of anionic palmitoyloleoylphosphatidylglycerol lipid bilayers with Na+ counterions.
Biophysical journal 2007;92(4):1114-24.
2007: Aittoniemi Jussi; Niemelä Perttu S; Hyvönen Marja T; Karttunen Mikko; Vattulainen Ilpo
Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.
Biophysical journal 2007;92(4):1125-37.
2006: Murtola Teemu; Róg Tomasz; Falck Emma; Karttunen Mikko; Vattulainen Ilpo
Transient ordered domains in single-component phospholipid bilayers.
Physical review letters 2006;97(23):238102.
2006: Aittoniemi Jussi; Róg Tomasz; Niemelä Perttu; Pasenkiewicz-Gierula Marta; Karttunen Mikko; Vattulainen Ilpo
Tilt: major factor in sterols' ordering capability in membranes.
The journal of physical chemistry. B 2006;110(51):25562-4.
2006: Falck Emma; Hautala Jari T; Karttunen Mikko; Kinnunen Paavo K J; Patra Michael; Saaren-Seppälä Heikki; Vattulainen Ilpo; Wiedmer Susanne K; Holopainen Juha M
Interaction of fusidic acid with lipid membranes: Implications to the mechanism of antibiotic activity.
Biophysical journal 2006;91(5):1787-99.
2006: Repáková Jarmila; Holopainen Juha M; Karttunen Mikko; Vattulainen Ilpo
Influence of pyrene-labeling on fluid lipid membranes.
The journal of physical chemistry. B 2006;110(31):15403-10.
2006: Heikelä Mikko; Vattulainen Ilpo; Hyvönen Marja T
Atomistic simulation studies of cholesteryl oleates: model for the core of lipoprotein particles.
Biophysical journal 2006;90(7):2247-57.
2006: Gurtovenko Andrey A; Lyulin Sergey V; Karttunen Mikko; Vattulainen Ilpo
Molecular dynamics study of charged dendrimers in salt-free solution: effect of counterions.
The Journal of chemical physics 2006;124(9):94904.
2006: Patra Michael; Salonen Emppu; Terama Emma; Vattulainen Ilpo; Faller Roland; Lee Bryan W; Holopainen Juha; Karttunen Mikko
Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers.
Biophysical journal 2006;90(4):1121-35.
2006: Niemelä Perttu S; Hyvönen Marja T; Vattulainen Ilpo
Influence of chain length and unsaturation on sphingomyelin bilayers.
Biophysical journal 2006;90(3):851-63.
2006: Vainio Saara; Jansen Maurice; Koivusalo Mirkka; Róg Tomasz; Karttunen Mikko; Vattulainen Ilpo; Ikonen Elina
Significance of sterol structural specificity. Desmosterol cannot replace cholesterol in lipid rafts.
The Journal of biological chemistry 2006;281(1):348-55.
2005: Gurtovenko Andrey A; Vattulainen Ilpo
Pore formation coupled to ion transport through lipid membranes as induced by transmembrane ionic charge imbalance: atomistic molecular dynamics study.
Journal of the American Chemical Society 2005;127(50):17570-1.
2005: Gurtovenko Andrey A; Miettinen Markus; Karttunen Mikko; Vattulainen Ilpo
Effect of monovalent salt on cationic lipid membranes as revealed by molecular dynamics simulations.
The journal of physical chemistry. B 2005;109(44):21126-34.
2005: Salonen E; Terama E; Vattulainen I; Karttunen M
Dielectrophoresis of nanocolloids: a molecular dynamics study.
The European physical journal. E, Soft matter 2005;18(2):133-42.
2005: Punkkinen Olli; Hansen Per Lyngs; Miao Ling; Vattulainen Ilpo
DNA overstretching transition: ionic strength effects.
Biophysical journal 2005;89(2):967-78.
2005: Falck Emma; Patra Michael; Karttunen Mikko; Hyvönen Marja T; Vattulainen Ilpo
Response to comment by Almeida et al.: free area theories for lipid bilayers--predictive or not?
Biophysical journal 2005;89(1):745-52.
2005: Masín M; Vattulainen I; Ala-Nissila T; Chvoj Z
Nonequilibrium effects in diffusion of interacting particles on vicinal surfaces.
The Journal of chemical physics 2005;122(21):214728.
2005: Repáková Jarmila; Holopainen Juha M; Morrow Michael R; McDonald Mark C; Capková Pavla; Vattulainen Ilpo
Influence of DPH on the structure and dynamics of a DPPC bilayer.
Biophysical journal 2005;88(5):3398-410.
2005: Punkkinen O; Falck E; Vattulainen I; Ala-Nissila T
Dynamics and scaling of polymers in a dilute solution: analytical treatment in two and higher dimensions.
The Journal of chemical physics 2005;122(9):094904.
2005: Rog Tomasz; Vattulainen Ilpo; Karttunen Mikko
Modeling glycolipids: take one.
Cellular & molecular biology letters 2005;10(4):625-30.
2005: Stimson Lorna M; Vattulainen Ilpo; Róg Tomasz; Karttunen Mikko
Exploring the effect of xenon on biomembranes.
Cellular & molecular biology letters 2005;10(4):563-9.
2004: Falck Emma; Patra Michael; Karttunen Mikko; Hyvönen Marja T; Vattulainen Ilpo
Impact of cholesterol on voids in phospholipid membranes.
The Journal of chemical physics 2004;121(24):12676-89.
2004: Murtola Teemu; Falck Emma; Patra Michael; Karttunen Mikko; Vattulainen Ilpo
Coarse-grained model for phospholipid/cholesterol bilayer.
The Journal of chemical physics 2004;121(18):9156-65.
2004: Niemelä Perttu; Hyvönen Marja T; Vattulainen Ilpo
Structure and dynamics of sphingomyelin bilayer: insight gained through systematic comparison to phosphatidylcholine.
Biophysical journal 2004;87(5):2976-89.
2004: Falck Emma; Patra Michael; Karttunen Mikko; Hyvönen Marja T; Vattulainen Ilpo
Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers.
Biophysical journal 2004;87(2):1076-91.
2004: Gurtovenko Andrey A; Patra Michael; Karttunen Mikko; Vattulainen Ilpo
Cationic DMPC/DMTAP lipid bilayers: molecular dynamics study.
Biophysical journal 2004;86(6):3461-72.
2004: Falck E; Lahtinen J M; Vattulainen I; Ala-Nissila T
Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions.
The European physical journal. E, Soft matter 2004;13(3):267-75.
2004: Zuckermann Martin J; Ipsen John H; Miao Ling; Mouritsen Ole G; Nielsen Morten; Polson James; Thewalt Jenifer; Vattulainen Ilpo; Zhu Hong
Modeling lipid-sterol bilayers: applications to structural evolution, lateral diffusion, and rafts.
Methods in enzymology 2004;383():198-229.
2003: Falck E; Punkkinen O; Vattulainen I; Ala-Nissila T
Dynamics and scaling of two-dimensional polymers in a dilute solution.
Physical review. E, Statistical, nonlinear, and soft matter physics 2003;68(5 Pt 1):050102.
2003: Patra M; Karttunen M; Hyvönen M T; Falck E; Lindqvist P; Vattulainen I
Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions.
Biophysical journal 2003;84(6):3636-45.

Sign-in to see more