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John Bowers

Research Profile

Genes & Molecular Sequences

Physiology

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Jennifer R Mandel; Laura F Marek; Savithri Nambeesan; Loren H Rieseberg; John E Bowers; Daniel Ebert; Steven J Knapp; John M Burke
Association mapping and the genomic consequences of selection in sunflower.
John E Bowers; Michael S Barker; Jonathan Corbi; Steven J Knapp; Savithri Nambeesan; Loren H Rieseberg; John M Burke
Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms.
Yufang Guo; Adam Heesacker; Nelly Khalilian; Sameer Khanal; Ervin D Nagy; Peggy Ozias-Akins; H Thomas Stalker; Shunxue Tang; Christopher A Taylor; Dong Zhang; John E Bowers; Steven J Knapp
Comparative mapping in intraspecific populations uncovers a high degree of macrosynteny between A- and B-genome diploid species of peanut.

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All Publications

2013: Jennifer R Mandel; Laura F Marek; Savithri Nambeesan; Loren H Rieseberg; John E Bowers; Daniel Ebert; Steven J Knapp; John M Burke
Association mapping and the genomic consequences of selection in sunflower.
PLoS genetics 2013;9(3):e1003378.
2012: John E Bowers; Michael S Barker; Jonathan Corbi; Steven J Knapp; Savithri Nambeesan; Loren H Rieseberg; John M Burke
Development of an ultra-dense genetic map of the sunflower genome based on single-feature polymorphisms.
PloS one 2012;7(12):e51360.
2012: Yufang Guo; Adam Heesacker; Nelly Khalilian; Sameer Khanal; Ervin D Nagy; Peggy Ozias-Akins; H Thomas Stalker; Shunxue Tang; Christopher A Taylor; Dong Zhang; John E Bowers; Steven J Knapp
Comparative mapping in intraspecific populations uncovers a high degree of macrosynteny between A- and B-genome diploid species of peanut.
BMC genomics 2012;13():608.
2012: Ervin D Nagy; Niels Nielsen; Rebecca A Okashah; Peggy Ozias-Akins; R Varma Penmetsa; H Thomas Stalker; Shunxue Tang; Christopher A Taylor; Dong Zhang; John E Bowers; Noelia Carrasquilla-Garcia; Douglas Cook; Andrew D Farmer; Yufang Guo; Adam Heesacker; Nelly Khalilian; Sameer Khanal; Steven J Knapp
A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut.
BMC genomics 2012;13():469.
2011: Xiyin Wang; Yongli Xiao; Bayram Yuksel; Richard M Amasino; John E Bowers; Ethan Epps; Emily Giattina; Jennifer Ingles; Santhosh Karunakaran; Cornelia Lemke; Lifeng Lin; Barry Marler; Jeong-Hwan Mun; Lisa K Nelson; Thomas C Osborn; Beom-Seok Park; Gary Pierce; J Chris Pires; Carlos F Quiros; Carl Rogers; Heidi Sarazen; Young-Joo Seol; Manuel J Torres; Christopher D Town; Andrew H Paterson
A physical map of Brassica oleracea shows complexity of chromosomal changes following recursive paleopolyploidizations.
BMC genomics 2011;12():470.
2010: Haibao Tang; John E Bowers; Xiyin Wang; Andrew H Paterson
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(1):472-7.
2009: Xiyin Wang; Haibao Tang; John E Bowers; Andrew H Paterson
Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization.
Genome research 2009;19(6):1026-32.
2009: Cheol Seong Jang; T L Kamps; Haibao Tang; John E Bowers; Cornelia Lemke; Andrew H Paterson
Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype.
Heredity 2009;102(3):266-73.
2009: Xiyin Wang; Udo Gowik; Haibao Tang; John E Bowers; Peter Westhoff; Andrew H Paterson
Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses.
Genome biology 2009;10(6):R68.
2009: Andrew H Paterson; John E Bowers; F. Alex Feltus; Haibao Tang; Lifeng Lin; Xiyin Wang
Comparative genomics of grasses promises a bountiful harvest.
Plant physiology 2009;149(1):125-31.
2008: Haibao Tang; Xiyin Wang; John E Bowers; Ray Ming; Maqsudul Alam; Andrew H Paterson
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.
Genome research 2008;18(12):1944-54.
2008: Haibao Tang; John E Bowers; Xiyin Wang; Ray Ming; Maqsudul Alam; Andrew H Paterson
Synteny and collinearity in plant genomes.
Science (New York, N.Y.) 2008;320(5875):486-8.
2007: Xiyin Wang; Haibao Tang; John E Bowers; F. Alex Feltus; Andrew H Paterson
Extensive concerted evolution of rice paralogs and the road to regaining independence.
Genetics 2007;177(3):1753-63.
2006: Andrew H Paterson; Brad A Chapman; Jessica Kissinger; John E Bowers; F. Alex Feltus; James C Estill
Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon.
Trends in genetics : TIG 2006;22(11):597-602.
2006: Brad A Chapman; John E Bowers; F. Alex Feltus; Andrew H Paterson
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(8):2730-5.
2006: C M Bethel; E B Sciara; James C Estill; John E Bowers; W Hanna; Andrew H Paterson
A framework linkage map of bermudagrass (Cynodon dactylon x transvaalensis) based on single-dose restriction fragments.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;112(4):727-37.
2005: Junkang Rong; John E Bowers; Stefan R Schulze; Vijay N Waghmare; Carl J Rogers; Gary J Pierce; Hua Zhang; James C Estill; Andrew H Paterson
Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy.
Genome research 2005;15(9):1198-210.
2005: Peter Morrell; T D Williams-Coplin; A L Lattu; John E Bowers; J M Chandler; Andrew H Paterson
Crop-to-weed introgression has impacted allelic composition of johnsongrass populations with and without recent exposure to cultivated sorghum.
Molecular ecology 2005;14(7):2143-54.
2005: Alexandra M Casa; Sharon E Mitchell; Martha Hamblin; H Sun; John E Bowers; Andrew H Paterson; Charles F Aquadro; Stephen Kresovich
Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(1):23-30.
2005: B Yüksel; John E Bowers; James C Estill; L Goff; Cornelia Lemke; Andrew H Paterson
Exploratory integration of peanut genetic and physical maps and possible contributions from Arabidopsis.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(1):87-94.
2005: Andrew H Paterson; John E Bowers; Yves Van de Peer; Klaas Vandepoele
Ancient duplication of cereal genomes.
The New phytologist 2005;165(3):658-61.
2004: Andrew H Paterson; John E Bowers; Brad A Chapman
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9903-8.
2004: Andrew H Paterson; John E Bowers; Brad A Chapman; Daniel G Peterson; Junkang Rong; Thomas Wicker
Comparative genome analysis of monocots and dicots, toward characterization of angiosperm diversity.
Current opinion in biotechnology 2004;15(2):120-5.
2004: Brad A Chapman; John E Bowers; Stefan R Schulze; Andrew H Paterson
A comparative phylogenetic approach for dating whole genome duplication events.
Bioinformatics (Oxford, England) 2004;20(2):180-5.
2004: Junkang Rong; Colette Abbey; John E Bowers; Curt L Brubaker; Charlene Chang; Peng W Chee; Terrye A Delmonte; Xiaoling Ding; Juan J Garza; Barry S Marler; Chan-hwa Park; Gary J Pierce; Katy M Rainey; Vipin K Rastogi; Stefan R Schulze; Norma L Trolinder; Jonathan F Wendel; Thea A Wilkins; T Dawn Williams-Coplin; Rod A Wing; Robert J Wright; Xinping Zhao; Linghua Zhu; Andrew H Paterson
A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).
Genetics 2004;166(1):389-417.
2003: Andrew H Paterson; John E Bowers; Daniel G Peterson; James C Estill; Brad A Chapman
Structure and evolution of cereal genomes.
Current opinion in genetics & development 2003;13(6):644-50.
2003: John E Bowers; Colette Abbey; Sharon Anderson; Charlene Chang; Xavier Draye; Alison H Hoppe; Russell Jessup; Cornelia Lemke; Jennifer Lennington; Zhikang Li; Yann-Rong Lin; Sin-Chieh Liu; Lijun Luo; Barry S Marler; Ray Ming; Sharon E Mitchell; Dou Qiang; Kim Reischmann; Stefan R Schulze; D Neil Skinner; Yue-Wen Wang; Stephen Kresovich; Keith F Schertz; Andrew H Paterson
A high-density genetic recombination map of sequence-tagged sites for sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses.
Genetics 2003;165(1):367-86.
2003: John E Bowers; Brad A Chapman; Junkang Rong; Andrew H Paterson
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.
Nature 2003;422(6930):433-8.
2002: Karen Cone; Michael D McMullen; Irie Vroh Bi; Georgia L Davis; Young-Sun Yim; Jack M Gardiner; Mary L Polacco; Hector Sanchez-Villeda; Zhiwei Fang; Steve G Schroeder; Seth A Havermann; John E Bowers; Andrew H Paterson; Carol Soderlund; Friedrich W Engler; Rod A Wing; Edward H Coe
Genetic, physical, and informatics resources for maize. On the road to an integrated map.
Plant physiology 2002;130(4):1598-605.
2002: Daniel G Peterson; Stefan R Schulze; Erica B Sciara; Scott A Lee; John E Bowers; Alexander Nagel; Ning Jiang; Deanne Tibbitts; Susan R Wessler; Andrew H Paterson
Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery.
Genome research 2002;12(5):795-807.
2001: Xavier Draye; Yann-Rong Lin; X Y Qian; John E Bowers; G B Burow; Peter Morrell; Daniel G Peterson; GG Presting; S X Ren; Rod A Wing; Andrew H Paterson
Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.
Plant physiology 2001;125(3):1325-41.
2000: Andrew H Paterson; John E Bowers; M D Burow; Xavier Draye; C G Elsik; Chun-Xiao Jiang; C S Katsar; T H Lan; Yann-Rong Lin; Ray Ming; R J Wright
Comparative genomics of plant chromosomes.
The Plant cell 2000;12(9):1523-40.