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Michele Vendruscolo

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Publications

TOP 3
Bui Jennifer M; Gsponer Jörg; Vendruscolo Michele; Dobson Christopher M
Analysis of sub-tauc and supra-tauc motions in protein Gbeta1 using molecular dynamics simulations.
De Simone Alfonso; Cavalli Andrea; Hsu Shang-Te Danny; Vranken Wim; Vendruscolo Michele
Accurate random coil chemical shifts from an analysis of loop regions in native states of proteins.
Kohlhoff Kai J; Robustelli Paul; Cavalli Andrea; Salvatella Xavier; Vendruscolo Michele
Fast and accurate predictions of protein NMR chemical shifts from interatomic distances.

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All Publications

2009: Bui Jennifer M; Gsponer Jörg; Vendruscolo Michele; Dobson Christopher M
Analysis of sub-tauc and supra-tauc motions in protein Gbeta1 using molecular dynamics simulations.
Biophysical journal 2009;97(9):2513-20.
2009: De Simone Alfonso; Cavalli Andrea; Hsu Shang-Te Danny; Vranken Wim; Vendruscolo Michele
Accurate random coil chemical shifts from an analysis of loop regions in native states of proteins.
Journal of the American Chemical Society 2009;131(45):16332-3.
2009: Kohlhoff Kai J; Robustelli Paul; Cavalli Andrea; Salvatella Xavier; Vendruscolo Michele
Fast and accurate predictions of protein NMR chemical shifts from interatomic distances.
Journal of the American Chemical Society 2009;131(39):13894-5.
2009: Lendel Christofer; Bertoncini Carlos W; Cremades Nunilo; Waudby Christopher A; Vendruscolo Michele; Dobson Christopher M; Schenk Dale; Christodoulou John; Toth Gergely
On the mechanism of nonspecific inhibitors of protein aggregation: dissecting the interactions of alpha-synuclein with Congo red and Lacmoid.
Biochemistry 2009;48(35):8322-34.
2009: Auer Stefan; Trovato Antonio; Vendruscolo Michele
A condensation-ordering mechanism in nanoparticle-catalyzed peptide aggregation.
PLoS computational biology 2009;5(8):e1000458.
2009: Pechmann Sebastian; Levy Emmanuel D; Tartaglia Gian Gaetano; Vendruscolo Michele
Physicochemical principles that regulate the competition between functional and dysfunctional association of proteins.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(25):10159-64.
2009: Porto Markus; Roman H Eduardo; Vendruscolo Michele
Physical principles of protein behavior in the cell.
Journal of proteome research 2009;8(6):2615.
2009: Robustelli Paul; Cavalli Andrea; Dobson Christopher M; Vendruscolo Michele; Salvatella Xavier
Folding of small proteins by Monte Carlo simulations with chemical shift restraints without the use of molecular fragment replacement or structural homology.
The journal of physical chemistry. B 2009;113(22):7890-6.
2009: Routledge Katy E; Tartaglia Gian Gaetano; Platt Geoffrey W; Vendruscolo Michele; Radford Sheena E
Competition between intramolecular and intermolecular interactions in an amyloid-forming protein.
Journal of molecular biology 2009;389(4):776-86.
2009: Buell Alexander K; Tartaglia Gian Gaetano; Birkett Neil R; Waudby Christopher A; Vendruscolo Michele; Salvatella Xavier; Welland Mark E; Dobson Christopher M; Knowles Tuomas P J
Position-dependent electrostatic protection against protein aggregation.
Chembiochem : a European journal of chemical biology 2009;10(8):1309-12.
2009: Tartaglia Gian Gaetano; Pechmann Sebastian; Dobson Christopher M; Vendruscolo Michele
A relationship between mRNA expression levels and protein solubility in E. coli.
Journal of molecular biology 2009;388(2):381-9.
2009: Calamai Martino; Tartaglia Gian Gaetano; Vendruscolo Michele; Chiti Fabrizio; Dobson Christopher M
Mutational analysis of the aggregation-prone and disaggregation-prone regions of acylphosphatase.
Journal of molecular biology 2009;387(4):965-74.
2009: De Simone Alfonso; Richter Barbara; Salvatella Xavier; Vendruscolo Michele
Toward an accurate determination of free energy landscapes in solution states of proteins.
Journal of the American Chemical Society 2009;131(11):3810-1.
2009: Friel Claire T; Smith D Alastair; Vendruscolo Michele; Gsponer Joerg; Radford Sheena E
The mechanism of folding of Im7 reveals competition between functional and kinetic evolutionary constraints.
Nature structural & molecular biology 2009;16(3):318-24.
2009: Periole Xavier; Rampioni Aldo; Vendruscolo Michele; Mark Alan E
Factors that affect the degree of twist in beta-sheet structures: a molecular dynamics simulation study of a cross-beta filament of the GNNQQNY peptide.
The journal of physical chemistry. B 2009;113(6):1728-37.
2009: Hamada Daizo; Tanaka Toshiki; Tartaglia Gian Gaetano; Pawar Amol; Vendruscolo Michele; Kawamura Mei; Tamura Atsuo; Tanaka Naoki; Dobson Christopher M
Competition between folding, native-state dimerisation and amyloid aggregation in beta-lactoglobulin.
Journal of molecular biology 2009;386(3):878-90.
2008: Vendruscolo Michele; Tartaglia Gian Gaetano
Towards quantitative predictions in cell biology using chemical properties of proteins.
Molecular bioSystems 2008;4(12):1170-5.
2008: Auer Stefan; Dobson Christopher M; Vendruscolo Michele; Maritan Amos
Self-templated nucleation in peptide and protein aggregation.
Physical review letters 2008;101(25):258101.
2008: Calosci Nicoletta; Chi Celestine N; Richter Barbara; Camilloni Carlo; Engström Ake; Eklund Lars; Travaglini-Allocatelli Carlo; Gianni Stefano; Vendruscolo Michele; Jemth Per
Comparison of successive transition states for folding reveals alternative early folding pathways of two homologous proteins.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(49):19241-6.
2008: Auer Stefan; Meersman Filip; Dobson Christopher M; Vendruscolo Michele
A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates.
PLoS computational biology 2008;4(11):e1000222.
2008: Montalvao Rinaldo W; Cavalli Andrea; Salvatella Xavier; Blundell Tom L; Vendruscolo Michele
Structure determination of protein-protein complexes using NMR chemical shifts: case of an endonuclease colicin-immunity protein complex.
Journal of the American Chemical Society 2008;130(47):15990-6.
2008: Calloni Giulia; Lendel Christofer; Campioni Silvia; Giannini Silva; Gliozzi Alessandra; Relini Annalisa; Vendruscolo Michele; Dobson Christopher M; Salvatella Xavier; Chiti Fabrizio
Structure and dynamics of a partially folded protein are decoupled from its mechanism of aggregation.
Journal of the American Chemical Society 2008;130(39):13040-50.
2008: Wolff Katrin; Vendruscolo Michele; Porto Markus
A stochastic method for the reconstruction of protein structures from one-dimensional structural profiles.
Gene 2008;422(1-2):47-51.
2008: Strodel Birgit; Fitzpatrick Anthony W; Vendruscolo Michele; Dobson Christopher M; Wales David J
Characterizing the first steps of amyloid formation for the ccbeta peptide.
The journal of physical chemistry. B 2008;112(32):9998-10004.
2008: Vendruscolo Michele
Protein dynamics under light control.
Nature chemical biology 2008;4(8):449-50.
2008: Tartaglia Gian Gaetano; Vendruscolo Michele
The Zyggregator method for predicting protein aggregation propensities.
Chemical Society reviews 2008;37(7):1395-401.
2008: Dhulesia Anne; Gsponer Joerg; Vendruscolo Michele
Mapping of two networks of residues that exhibit structural and dynamical changes upon binding in a PDZ domain protein.
Journal of the American Chemical Society 2008;130(28):8931-9.
2008: Tartaglia Gian Gaetano; Pawar Amol P; Campioni Silvia; Dobson Christopher M; Chiti Fabrizio; Vendruscolo Michele
Prediction of aggregation-prone regions in structured proteins.
Journal of molecular biology 2008;380(2):425-36.
2008: Gsponer Jörg; Christodoulou John; Cavalli Andrea; Bui Jennifer M; Richter Barbara; Dobson Christopher M; Vendruscolo Michele
A coupled equilibrium shift mechanism in calmodulin-mediated signal transduction.
Structure (London, England : 1993) 2008;16(5):736-46.
2008: Bemporad Francesco; Gsponer Joerg; Hopearuoho Harri I; Plakoutsi Georgia; Stati Gianmarco; Stefani Massimo; Taddei Niccolò; Vendruscolo Michele; Chiti Fabrizio
Biological function in a non-native partially folded state of a protein.
The EMBO journal 2008;27(10):1525-35.
2008: Rivers Robert C; Kumita Janet R; Tartaglia Gian Gaetano; Dedmon Matthew M; Pawar Amol; Vendruscolo Michele; Dobson Christopher M; Christodoulou John
Molecular determinants of the aggregation behavior of alpha- and beta-synuclein.
Protein science : a publication of the Protein Society 2008;17(5):887-98.
2008: Geierhaas Christian D; Salvatella Xavier; Clarke Jane; Vendruscolo Michele
Characterisation of transition state structures for protein folding using 'high', 'medium' and 'low' {Phi}-values.
Protein engineering, design & selection : PEDS 2008;21(3):215-22.
2008: Várnai Péter; Dobson Christopher M; Vendruscolo Michele
Determination of the transition state ensemble for the folding of ubiquitin from a combination of Phi and Psi analyses.
Journal of molecular biology 2008;377(2):575-88.
2008: Salvatella X; Richter B; Vendruscolo M
Influence of the fluctuations of the alignment tensor on the analysis of the structure and dynamics of proteins using residual dipolar couplings.
Journal of biomolecular NMR 2008;40(1):71-81.
2008: Wolff Katrin; Vendruscolo Michele; Porto Markus
Stochastic reconstruction of protein structures from effective connectivity profiles.
PMC biophysics 2008;1(1):5.
2008: Herrera Fernando E; Chesi Alessandra; Paleologou Katerina E; Schmid Adrian; Munoz Adriana; Vendruscolo Michele; Gustincich Stefano; Lashuel Hilal A; Carloni Paolo
Inhibition of alpha-synuclein fibrillization by dopamine is mediated by interactions with five C-terminal residues and with E83 in the NAC region.
PloS one 2008;3(10):e3394.
2008: Cheng Tammy M K; Lu Yu-En; Vendruscolo Michele; Lio' Pietro; Blundell Tom L
Prediction by graph theoretic measures of structural effects in proteins arising from non-synonymous single nucleotide polymorphisms.
PLoS computational biology 2008;4(7):e1000135.
2008: Cheon Mookyung; Favrin Giorgio; Chang Iksoo; Dobson Christopher M; Vendruscolo Michele
Calculation of the free energy barriers in the oligomerisation of Abeta peptide fragments.
Frontiers in bioscience : a journal and virtual library 2008;13():5614-22.
2007: Knowles Tuomas P; Fitzpatrick Anthony W; Meehan Sarah; Mott Helen R; Vendruscolo Michele; Dobson Christopher M; Welland Mark E
Role of intermolecular forces in defining material properties of protein nanofibrils.
Science (New York, N.Y.) 2007;318(5858):1900-3.
2007: Monsellier Elodie; Ramazzotti Matteo; de Laureto Patrizia Polverino; Tartaglia Gian-Gaetano; Taddei Niccolò; Fontana Angelo; Vendruscolo Michele; Chiti Fabrizio
The distribution of residues in a polypeptide sequence is a determinant of aggregation optimized by evolution.
Biophysical journal 2007;93(12):4382-91.
2007: Periole Xavier; Vendruscolo Michele; Mark Alan E
Molecular dynamics simulations from putative transition states of alpha-spectrin SH3 domain.
Proteins 2007;69(3):536-50.
2007: Auer Stefan; Miller Mark A; Krivov Sergei V; Dobson Christopher M; Karplus Martin; Vendruscolo Michele
Importance of metastable states in the free energy landscapes of polypeptide chains.
Physical review letters 2007;99(17):178104.
2007: Luheshi Leila M; Tartaglia Gian Gaetano; Brorsson Ann-Christin; Pawar Amol P; Watson Ian E; Chiti Fabrizio; Vendruscolo Michele; Lomas David A; Dobson Christopher M; Crowther Damian C
Systematic in vivo analysis of the intrinsic determinants of amyloid Beta pathogenicity.
PLoS biology 2007;5(11):e290.
2007: Vendruscolo Michele; Dobson Christopher M
Chemical biology: More charges against aggregation.
Nature 2007;449(7162):555.
2007: Cheon Mookyung; Chang Iksoo; Mohanty Sandipan; Luheshi Leila M; Dobson Christopher M; Vendruscolo Michele; Favrin Giorgio
Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils.
PLoS computational biology 2007;3(9):1727-38.
2007: Meehan Sarah; Knowles Tuomas P J; Baldwin Andrew J; Smith Jeffrey F; Squires Adam M; Clements Phillip; Treweek Teresa M; Ecroyd Heath; Tartaglia Gian Gaetano; Vendruscolo Michele; Macphee Cait E; Dobson Christopher M; Carver John A
Characterisation of amyloid fibril formation by small heat-shock chaperone proteins human alphaA-, alphaB- and R120G alphaB-crystallins.
Journal of molecular biology 2007;372(2):470-84.
2007: Auer Stefan; Dobson Christopher M; Vendruscolo Michele
Characterization of the nucleation barriers for protein aggregation and amyloid formation.
HFSP journal 2007;1(2):137-46.
2007: Cavalli Andrea; Salvatella Xavier; Dobson Christopher M; Vendruscolo Michele
Protein structure determination from NMR chemical shifts.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(23):9615-20.
2007: Meinhardt Jessica; Tartaglia Gian Gaetano; Pawar Amol; Christopeit Tony; Hortschansky Peter; Schroeckh Volker; Dobson Christopher M; Vendruscolo Michele; Fändrich Marcus
Similarities in the thermodynamics and kinetics of aggregation of disease-related Abeta(1-40) peptides.
Protein science : a publication of the Protein Society 2007;16(6):1214-22.
2007: Tartaglia Gian Gaetano; Pechmann Sebastian; Dobson Christopher M; Vendruscolo Michele
Life on the edge: a link between gene expression levels and aggregation rates of human proteins.
Trends in biochemical sciences 2007;32(5):204-6.
2007: Tartaglia Gian Gaetano; Cavalli Andrea; Vendruscolo Michele
Prediction of local structural stabilities of proteins from their amino acid sequences.
Structure (London, England : 1993) 2007;15(2):139-43.
2007: Vendruscolo Michele
Determination of conformationally heterogeneous states of proteins.
Current opinion in structural biology 2007;17(1):15-20.
2007: Richter Barbara; Gsponer Joerg; Várnai Péter; Salvatella Xavier; Vendruscolo Michele
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins.
Journal of biomolecular NMR 2007;37(2):117-35.
2007: Gianni Stefano; Geierhaas Christian D; Calosci Nicoletta; Jemth Per; Vuister Geerten W; Travaglini-Allocatelli Carlo; Vendruscolo Michele; Brunori Maurizio
A PDZ domain recapitulates a unifying mechanism for protein folding.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(1):128-33.
2007: Geierhaas Christian D; Nickson Adrian A; Lindorff-Larsen Kresten; Clarke Jane; Vendruscolo Michele
BPPred: a Web-based computational tool for predicting biophysical parameters of proteins.
Protein science : a publication of the Protein Society 2007;16(1):125-34.
2006: Gsponer Joerg; Hopearuoho Harri; Cavalli Andrea; Dobson Christopher M; Vendruscolo Michele
Geometry, energetics, and dynamics of hydrogen bonds in proteins: structural information derived from NMR scalar couplings.
Journal of the American Chemical Society 2006;128(47):15127-35.
2006: Francis Christopher J; Lindorff-Larsen Kresten; Best Robert B; Vendruscolo Michele
Characterization of the residual structure in the unfolded state of the Delta131Delta fragment of staphylococcal nuclease.
Proteins 2006;65(1):145-52.
2006: Vendruscolo Michele; Dobson Christopher M
Structural biology. Dynamic visions of enzymatic reactions.
Science (New York, N.Y.) 2006;313(5793):1586-7.
2006: Best Robert B; Lindorff-Larsen Kresten; DePristo Mark A; Vendruscolo Michele
Relation between native ensembles and experimental structures of proteins.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(29):10901-6.
2006: Geierhaas Christian D; Best Robert B; Paci Emanuele; Vendruscolo Michele; Clarke Jane
Structural comparison of the two alternative transition states for folding of TI I27.
Biophysical journal 2006;91(1):263-75.
2006: Best Robert B; Vendruscolo Michele
Structural interpretation of hydrogen exchange protection factors in proteins: characterization of the native state fluctuations of CI2.
Structure (London, England : 1993) 2006;14(1):97-106.
2006: Gsponer Joerg; Hopearuoho Harri; Whittaker Sara B-M; Spence Graham R; Moore Geoffrey R; Paci Emanuele; Radford Sheena E; Vendruscolo Michele
Determination of an ensemble of structures representing the intermediate state of the bacterial immunity protein Im7.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(1):99-104.
2006: Bastolla Ugo; Porto Markus; Roman H Eduardo; Vendruscolo Michele
A protein evolution model with independent sites that reproduces site-specific amino acid distributions from the Protein Data Bank.
BMC evolutionary biology 2006;6():43.
2006: Gsponer Joerg; Vendruscolo Michele
Theoretical approaches to protein aggregation.
Protein and peptide letters 2006;13(3):287-93.
2005: Salvi Giovanni; De Los Rios Paolo; Vendruscolo Michele
Effective interactions between chaotropic agents and proteins.
Proteins 2005;61(3):492-9.
2005: Paci Emanuele; Lindorff-Larsen Kresten; Dobson Christopher M; Karplus Martin; Vendruscolo Michele
Transition state contact orders correlate with protein folding rates.
Journal of molecular biology 2005;352(3):495-500.
2005: Lindorff-Larsen Kresten; Best Robert B; Vendruscolo Michele
Interpreting dynamically-averaged scalar couplings in proteins.
Journal of biomolecular NMR 2005;32(4):273-80.
2005: Salvatella Xavier; Dobson Christopher M; Fersht Alan R; Vendruscolo Michele
Determination of the folding transition states of barnase by using PhiI-value-restrained simulations validated by double mutant PhiIJ-values.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(35):12389-94.
2005: Pawar Amol P; Dubay Kateri F; Zurdo Jesús; Chiti Fabrizio; Vendruscolo Michele; Dobson Christopher M
Prediction of "aggregation-prone" and "aggregation-susceptible" regions in proteins associated with neurodegenerative diseases.
Journal of molecular biology 2005;350(2):379-92.
2005: Cavalli Andrea; Vendruscolo Michele; Paci Emanuele
Comparison of sequence-based and structure-based energy functions for the reversible folding of a peptide.
Biophysical journal 2005;88(5):3158-66.
2005: Vendruscolo Michele; Dobson Christopher M
A glimpse at the organization of the protein universe.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(16):5641-2.
2005: Kristjansdottir Sigridur; Lindorff-Larsen Kresten; Fieber Wolfgang; Dobson Christopher M; Vendruscolo Michele; Poulsen Flemming M
Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies.
Journal of molecular biology 2005;347(5):1053-62.
2005: Bastolla Ugo; Porto Markus; Roman H Eduardo; Vendruscolo Michele
Looking at structure, stability, and evolution of proteins through the principal eigenvector of contact matrices and hydrophobicity profiles.
Gene 2005;347(2):219-30.
2005: Porto Markus; Roman H Eduardo; Vendruscolo Michele; Bastolla Ugo
Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences.
Molecular biology and evolution 2005;22(3):630-8.
2005: Vendruscolo Michele; Dobson Christopher M
Towards complete descriptions of the free-energy landscapes of proteins.
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 2005;363(1827):433-50; discussion 450-2.
2005: Lindorff-Larsen Kresten; Røgen Peter; Paci Emanuele; Vendruscolo Michele; Dobson Christopher M
Protein folding and the organization of the protein topology universe.
Trends in biochemical sciences 2005;30(1):13-9.
2005: Lindorff-Larsen Kresten; Best Robert B; Depristo Mark A; Dobson Christopher M; Vendruscolo Michele
Simultaneous determination of protein structure and dynamics.
Nature 2005;433(7022):128-32.
2005: Dedmon Matthew M; Lindorff-Larsen Kresten; Christodoulou John; Vendruscolo Michele; Dobson Christopher M
Mapping long-range interactions in alpha-synuclein using spin-label NMR and ensemble molecular dynamics simulations.
Journal of the American Chemical Society 2005;127(2):476-7.
2005: Bastolla Ugo; Porto Markus; Roman H Eduardo; Vendruscolo Michele
Principal eigenvector of contact matrices and hydrophobicity profiles in proteins.
Proteins 2005;58(1):22-30.
2004: Geierhaas Christian D; Paci Emanuele; Vendruscolo Michele; Clarke Jane
Comparison of the transition states for folding of two Ig-like proteins from different superfamilies.
Journal of molecular biology 2004;343(4):1111-23.
2004: DuBay Kateri F; Pawar Amol P; Chiti Fabrizio; Zurdo Jesús; Dobson Christopher M; Vendruscolo Michele
Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains.
Journal of molecular biology 2004;341(5):1317-26.
2004: Korzhnev Dmitry M; Salvatella Xavier; Vendruscolo Michele; Di Nardo Ariel A; Davidson Alan R; Dobson Christopher M; Kay Lewis E
Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR.
Nature 2004;430(6999):586-90.
2004: Best Robert B; Vendruscolo Michele
Determination of protein structures consistent with NMR order parameters.
Journal of the American Chemical Society 2004;126(26):8090-1.
2004: Paci Emanuele; Gsponer Jörg; Salvatella Xavier; Vendruscolo Michele
Molecular dynamics studies of the process of amyloid aggregation of peptide fragments of transthyretin.
Journal of molecular biology 2004;340(3):555-69.
2004: Doye Jonathan P K; Louis Ard A; Vendruscolo Michele
Inhibition of protein crystallization by evolutionary negative design.
Physical biology 2004;1(1-2):P9-13.
2004: Porto Markus; Bastolla Ugo; Roman H Eduardo; Vendruscolo Michele
Reconstruction of protein structures from a vectorial representation.
Physical review letters 2004;92(21):218101.
2004: Lindorff-Larsen Kresten; Vendruscolo Michele; Paci Emanuele; Dobson Christopher M
Transition states for protein folding have native topologies despite high structural variability.
Nature structural & molecular biology 2004;11(5):443-9.
2004: Lindorff-Larsen Kresten; Kristjansdottir Sigridur; Teilum Kaare; Fieber Wolfgang; Dobson Christopher M; Poulsen Flemming M; Vendruscolo Michele
Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein.
Journal of the American Chemical Society 2004;126(10):3291-9.
2004: Paci Emanuele; Friel Claire T; Lindorff-Larsen Kresten; Radford Sheena E; Karplus Martin; Vendruscolo Michele
Comparison of the transition state ensembles for folding of Im7 and Im9 determined using all-atom molecular dynamics simulations with phi value restraints.
Proteins 2004;54(3):513-25.
2003: Vendruscolo Michele; Paci Emanuele; Dobson Christopher M; Karplus Martin
Rare fluctuations of native proteins sampled by equilibrium hydrogen exchange.
Journal of the American Chemical Society 2003;125(51):15686-7.
2003: Vendruscolo Michele; Paci Emanuele; Karplus Martin; Dobson Christopher M
Structures and relative free energies of partially folded states of proteins.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(25):14817-21.
2003: Lindorff-Larsen Kresten; Paci Emanuele; Serrano Luis; Dobson Christopher M; Vendruscolo Michele
Calculation of mutational free energy changes in transition states for protein folding.
Biophysical journal 2003;85(2):1207-14.
2003: Paci Emanuele; Cavalli Andrea; Vendruscolo Michele; Caflisch Amedeo
Analysis of the distributed computing approach applied to the folding of a small beta peptide.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8217-22.
2003: Vendruscolo Michele; Zurdo Jesús; MacPhee Cait E; Dobson Christopher M
Protein folding and misfolding: a paradigm of self-assembly and regulation in complex biological systems.
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 2003;361(1807):1205-22.
2003: Bastolla Ugo; Porto Markus; Eduardo Roman Markus H; Vendruscolo Michele H
Connectivity of neutral networks, overdispersion, and structural conservation in protein evolution.
Journal of molecular evolution 2003;56(3):243-54.
2003: Vendruscolo Michele; Paci Emanuele
Protein folding: bringing theory and experiment closer together.
Current opinion in structural biology 2003;13(1):82-7.
2003: Paci Emanuele; Clarke Jane; Steward Annette; Vendruscolo Michele; Karplus Martin
Self-consistent determination of the transition state for protein folding: application to a fibronectin type III domain.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(2):394-9.
2003: Bastolla Ugo; Porto Markus; Roman H Eduardo; Vendruscolo Michele
Statistical properties of neutral evolution.
Journal of molecular evolution 2003;57 Suppl 1():S103-19.
2002: Paci Emanuele; Vendruscolo Michele; Karplus Martin
Validity of Go models: comparison with a solvent-shielded empirical energy decomposition.
Biophysical journal 2002;83(6):3032-8.
2002: Bastolla Ugo; Porto Markus; Roman H Eduardo; Vendruscolo Michele
Lack of self-averaging in neutral evolution of proteins.
Physical review letters 2002;89(20):208101.
2002: Paci Emanuelel; Vendruscolo Michele; Dobson Christopher M; Karplus Martin
Determination of a transition state at atomic resolution from protein engineering data.
Journal of molecular biology 2002;324(1):151-63.
2002: Paci Emanuele; Vendruscolo Michele; Karplus Martin
Native and non-native interactions along protein folding and unfolding pathways.
Proteins 2002;47(3):379-92.
2002: Getz Gad; Vendruscolo Michele; Sachs David; Domany Eytan
Automated assignment of SCOP and CATH protein structure classifications from FSSP scores.
Proteins 2002;46(4):405-15.
2002: Vendruscolo Michele
Energetics of enzyme stability.
Trends in biotechnology 2002;20(1):1-2; discussion 2-3.
2001: Bastolla U; Farwer J; Knapp E W; Vendruscolo M
How to guarantee optimal stability for most representative structures in the Protein Data Bank.
Proteins 2001;44(2):79-96.
2001: Vendruscolo M; Paci E; Dobson C M; Karplus M
Three key residues form a critical contact network in a protein folding transition state.
Nature 2001;409(6820):641-5.
2000: Vendruscolo M; Mirny L A; Shakhnovich E I; Domany E
Comparison of two optimization methods to derive energy parameters for protein folding: perceptron and Z score.
Proteins 2000;41(2):192-201.
2000: Park K; Vendruscolo M; Domany E
Toward an energy function for the contact map representation of proteins.
Proteins 2000;40(2):237-48.
2000: Bastolla U; Vendruscolo M; Knapp E W
A statistical mechanical method to optimize energy functions for protein folding.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(8):3977-81.
2000: Vendruscolo M; Najmanovich R; Domany E
Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?
Proteins 2000;38(2):134-48.

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Michele Vendruscolo

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