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Mark Viant

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Alessia Lodi; Gareth J Morgan; Stefano Tiziani; Mark R Viant; Christopher M Bunce; Ulrich L Günther; Farhat L Khanim; Mark T Drayson
Proton NMR-based metabolite analyses of archived serial paired serum and urine samples from myeloma patients at different stages of disease activity identifies acetylcarnitine as a novel marker of active disease.
Ralf J M Weber; Jonathan Bruty; Shan He; Eva Li; Mark R Viant
MaConDa: a publicly accessible mass spectrometry contaminants database.
Tim Williams; Huifeng Wu; Joseph K Abraham; Katie L Bartie; Kevin J Chipman; Amer M Diab; Stephen G George; John M Herbert; Olga Hrydziuszko; Ioanna Katsiadaki; Michael J Leaver; Brett P Lyons; Carolynn Mackenzie; Grant D Stentiford; John B Taggart; Nil Turan; Mark R Viant; Francesco Falciani
Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach.

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All Publications

2013: Alessia Lodi; Gareth J Morgan; Stefano Tiziani; Mark R Viant; Christopher M Bunce; Ulrich L Günther; Farhat L Khanim; Mark T Drayson
Proton NMR-based metabolite analyses of archived serial paired serum and urine samples from myeloma patients at different stages of disease activity identifies acetylcarnitine as a novel marker of active disease.
PloS one 2013;8(2):e56422.
2012: Ralf J M Weber; Jonathan Bruty; Shan He; Eva Li; Mark R Viant
MaConDa: a publicly accessible mass spectrometry contaminants database.
Bioinformatics (Oxford, England) 2012;28(21):2856-7.
2011: Tim Williams; Huifeng Wu; Joseph K Abraham; Katie L Bartie; Kevin J Chipman; Amer M Diab; Stephen G George; John M Herbert; Olga Hrydziuszko; Ioanna Katsiadaki; Michael J Leaver; Brett P Lyons; Carolynn Mackenzie; Grant D Stentiford; John B Taggart; Nil Turan; Mark R Viant; Francesco Falciani
Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach.
PLoS computational biology 2011;7(8):e1002126.
2011: Isabella Römer; Mark R Viant; Thomas A White; Mohammed Baalousha; Kevin Chipman; Jamie R Lead
Aggregation and dispersion of silver nanoparticles in exposure media for aquatic toxicity tests.
Journal of chromatography. A 2011;1218(27):4226-33.
2011: Ralf J M Weber; Andrew D Southam; Ulf Sommer; Mark R Viant
Characterization of isotopic abundance measurements in high resolution FT-ICR and Orbitrap mass spectra for improved confidence of metabolite identification.
Analytical chemistry 2011;83(10):3737-43.
2011: Helen C Poynton; Nadine S Taylor; Joshua Hicks; Kimberly Colson; Sarah Chan; Candace Clark; Leona Scanlan; Alexandre V Loguinov; Chris Vulpe; Mark R Viant
Metabolomics of microliter hemolymph samples enables an improved understanding of the combined metabolic and transcriptional responses of Daphnia magna to cadmium.
Environmental science & technology 2011;45(8):3710-7.
2011: Andrew D Southam; Anke Lange; Adam Hines; Elizabeth Mary Hill; Yoshinao Katsu; Taisen Iguchi; Charles R Tyler; Mark R Viant
Metabolomics reveals target and off-target toxicities of a model organophosphate pesticide to roach (Rutilus rutilus): implications for biomonitoring.
Environmental science & technology 2011;45(8):3759-67.
2011: Alessia Lodi; Stefano Tiziani; Farhat L Khanim; Mark T Drayson; Ulrich L Günther; Christopher M Bunce; Mark R Viant
Hypoxia triggers major metabolic changes in AML cells without altering indomethacin-induced TCA cycle deregulation.
ACS chemical biology 2011;6(2):169-75.
2011: Timothy J Knowles; Douglas F Browning; Mark Jeeves; Riyaz Maderbocus; Sandya Rajesh; Pooja Sridhar; Eleni Manoli; Danielle Emery; Ulf Sommer; Ashley Spencer; Denisse L Leyton; Derrick Squire; Roy R Chaudhuri; Mark R Viant; Adam F Cunningham; Ian R Henderson; Michael Overduin
Structure and function of BamE within the outer membrane and the β-barrel assembly machine.
EMBO reports 2011;12(2):123-8.
2010: Nadine S Taylor; Ralf J M Weber; Tom A White; Mark R Viant
Discriminating between different acute chemical toxicities via changes in the daphnid metabolome.
Toxicological sciences : an official journal of the Society of Toxicology 2010;118(1):307-17.
2010: April R Van Scoy; Ching Yu Lin; Brian S Anderson; Bryn M Philips; Marida J Martin; James McCall; Charles R Todd; David Crane; ML Sowby; Mark R Viant; Ronald S Tjeerdema
Metabolic responses produced by crude versus dispersed oil in Chinook salmon pre-smolts via NMR-based metabolomics.
Ecotoxicology and environmental safety 2010;73(5):710-7.
2010: Adam Hines; Fred J Staff; John Widdows; Russell M Compton; Francesco Falciani; Mark R Viant
Discovery of metabolic signatures for predicting whole organism toxicology.
Toxicological sciences : an official journal of the Society of Toxicology 2010;115(2):369-78.
2010: Ioanna Katsiadaki; Tim Williams; Jonathan S Ball; Tim P Bean; Matthew B Sanders; Huifeng Wu; Eduarda M Santos; Margaret M Brown; Paul Baker; Fernando Ortega; Francesco Falciani; John A Craft; Charles R Tyler; Mark R Viant; James K Chipman
Hepatic transcriptomic and metabolomic responses in the Stickleback (Gasterosteus aculeatus) exposed to ethinyl-estradiol.
Aquatic toxicology (Amsterdam, Netherlands) 2010;97(3):174-87.
2010: Olga Hrydziuszko; Michael A Silva; Thamara Perera; Douglas A Richards; Nick Murphy; Darius Mirza; Mark R Viant
Application of metabolomics to investigate the process of human orthotopic liver transplantation: a proof-of-principle study.
Omics : a journal of integrative biology 2010;14(2):143-50.
2010: John M Easton; Lisa Harris; Mark R Viant; Andrew C Peet; Theodoros Arvanitis
Linked metabolites: a tool for the construction of directed metabolic graphs.
Computers in biology and medicine 2010;40(3):340-9.
2010: Alexandra J Sinclair; Mark R Viant; Alexandra K Ball; Michael A Burdon; Elizabeth A Walker; Paul M Stewart; Saaeha Rauz; Stephen P Young
NMR-based metabolomic analysis of cerebrospinal fluid and serum in neurological diseases--a diagnostic tool?
NMR in biomedicine 2010;23(2):123-32.
2010: Eduarda M Santos; Jonathan S Ball; Tim Williams; Huifeng Wu; Fernando Ortega; Ronny van Aerle; Ioanna Katsiadaki; Francesco Falciani; Mark R Viant; James K Chipman; Charles R Tyler
Identifying health impacts of exposure to copper using transcriptomics and metabolomics in a fish model.
Environmental science & technology 2010;44(2):820-6.
2010: Christian Ludwig; Mark R Viant
Two-dimensional J-resolved NMR spectroscopy: review of a key methodology in the metabolomics toolbox.
Phytochemical analysis : PCA 2010;21(1):22-32.
2009: Tobias K Karakach; Richard Knight; Eva M Lenz; Mark R Viant; John A Walter
Analysis of time course 1H NMR metabolomics data by multivariate curve resolution.
Magnetic resonance in chemistry : MRC 2009;47 Suppl 1():S105-17.
2009: Christian Ludwig; Douglas G Ward; Ashley Martin; Mark R Viant; Tariq Ismail; Philip J Johnson; Michael J O Wakelam; Ulrich L Günther
Fast targeted multidimensional NMR metabolomics of colorectal cancer.
Magnetic resonance in chemistry : MRC 2009;47 Suppl 1():S68-73.
2009: Helen M Parsons; Christian Ludwig; Mark R Viant
Line-shape analysis of J-resolved NMR spectra: application to metabolomics and quantification of intensity errors from signal processing and high signal congestion.
Magnetic resonance in chemistry : MRC 2009;47 Suppl 1():S86-95.
2009: Ching Yu Lin; Brian S Anderson; Bryn M Phillips; Andrew C Peng; Sara Clark; Jennifer Voorhees; Hong-Dar I Wu; Marida J Martin; James McCall; Charles R Todd; Fushing Hsieh; David Crane; Mark R Viant; Michael L Sowby; Ronald S Tjeerdema
Characterization of the metabolic actions of crude versus dispersed oil in salmon smolts via NMR-based metabolomics.
Aquatic toxicology (Amsterdam, Netherlands) 2009;95(3):230-8.
2009: Shan He; Xiaoli Li; Mark R Viant; Xin Yao
Profiling MS proteomics data using smoothed non-linear energy operator and Bayesian additive regression trees.
Proteomics 2009;9(17):4176-91.
2009: Tim Williams; Huifeng Wu; Eduarda M Santos; Jon Ball; Ioanna Katsiadaki; Margaret M Brown; Paul Baker; Fernando Ortega; Francesco Falciani; John A Craft; Charles R Tyler; James K Chipman; Mark R Viant
Hepatic transcriptomic and metabolomic responses in the stickleback (Gasterosteus aculeatus) exposed to environmentally relevant concentrations of dibenzanthracene.
Environmental science & technology 2009;43(16):6341-8.
2009: Tristan G Payne; Andrew D Southam; Theodoros Arvanitis; Mark R Viant
A signal filtering method for improved quantification and noise discrimination in fourier transform ion cyclotron resonance mass spectrometry-based metabolomics data.
Journal of the American Society for Mass Spectrometry 2009;20(6):1087-95.
2009: Helen M Parsons; Drew R Ekman; Timothy W Collette; Mark R Viant
Spectral relative standard deviation: a practical benchmark in metabolomics.
The Analyst 2009;134(3):478-85.
2009: Farhat L Khanim; Rachel E Hayden; Jane Birtwistle; Alessia Lodi; Stefano Tiziani; Nicholas J Davies; Jon P Ride; Mark R Viant; Ulrich L Gunther; joanne mountford; Heinrich Schrewe; Richard M Green; Jim A Murray; Mark T Drayson; Christopher M Bunce
Combined bezafibrate and medroxyprogesterone acetate: potential novel therapy for acute myeloid leukaemia.
PloS one 2009;4(12):e8147.
2009: Mark R Viant; Daniel W Bearden; Jacob G Bundy; Ian W Burton; Timothy W Collette; Drew R Ekman; Vilnis Ezernieks; Tobias K Karakach; Ching Yu Lin; Simone Rochfort; Jeffrey S De Ropp; Quincy Teng; Ronald S Tjeerdema; John A Walter; Huifeng Wu
International NMR-based environmental metabolomics intercomparison exercise.
Environmental science & technology 2009;43(1):219-25.
2009: Stefano Tiziani; Alessia Lodi; Farhat L Khanim; Mark R Viant; Christopher M Bunce; Ulrich L Günther
Metabolomic profiling of drug responses in acute myeloid leukaemia cell lines.
PloS one 2009;4(1):e4251.
2008: Andrew D Southam; John M Easton; Grant D Stentiford; Christian Ludwig; Theodoros Arvanitis; Mark R Viant
Metabolic changes in flatfish hepatic tumours revealed by NMR-based metabolomics and metabolic correlation networks.
Journal of proteome research 2008;7(12):5277-85.
2008: Stefano Tiziani; Abdul-Hamid Emwas; Alessia Lodi; Christian Ludwig; Christopher M Bunce; Mark R Viant; Ulrich L Günther
Optimized metabolite extraction from blood serum for 1H nuclear magnetic resonance spectroscopy.
Analytical biochemistry 2008;377(1):16-23.
2008: Yuanxin Xi; Jeffrey S De Ropp; Mark R Viant; David L Woodruff; Ping Yu
Improved identification of metabolites in complex mixtures using HSQC NMR spectroscopy.
Analytica chimica acta 2008;614(2):127-33.
2008: Stefano Tiziani; Alessia Lodi; Christian Ludwig; Helen M Parsons; Mark R Viant
Effects of the application of different window functions and projection methods on processing of 1H J-resolved nuclear magnetic resonance spectra for metabolomics.
Analytica chimica acta 2008;610(1):80-8.
2008: Huifeng Wu; Andrew D Southam; Adam Hines; Mark R Viant
High-throughput tissue extraction protocol for NMR- and MS-based metabolomics.
Analytical biochemistry 2008;372(2):204-12.
2008: Mark R Viant
Environmental metabolomics using 1H-NMR spectroscopy.
Methods in molecular biology (Clifton, N.J.) 2008;410():137-50.
2007: Adam Hines; Wai Ho Yeung; John Craft; Margaret Brown; Jill Kennedy; John Bignell; Grant D Stentiford; Mark R Viant
Comparison of histological, genetic, metabolomics, and lipid-based methods for sex determination in marine mussels.
Analytical biochemistry 2007;369(2):175-86.
2007: Ruth E Blunt; Kerry A Walsh; Danielle K Ashton; Mark R Viant; James K Chipman
Knowledge transfer initiative between molecular biologists and environmental researchers and regulators.
Environmental science and pollution research international 2007;14(5):293-6.
2007: Andrew D Southam; Tristan G Payne; Helen J Cooper; Theodoros Arvanitis; Mark R Viant
Dynamic range and mass accuracy of wide-scan direct infusion nanoelectrospray fourier transform ion cyclotron resonance mass spectrometry-based metabolomics increased by the spectral stitching method.
Analytical chemistry 2007;79(12):4595-602.
2007: Adam Hines; Gbolahan Samuel Oladiran; John Bignell; Grant D Stentiford; Mark R Viant
Direct sampling of organisms from the field and knowledge of their phenotype: key recommendations for environmental metabolomics.
Environmental science & technology 2007;41(9):3375-81.
2007: Helen M Parsons; Christian Ludwig; Ulrich L Günther; Mark R Viant
Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logarithm transformation.
BMC bioinformatics 2007;8():234.
2007: Mark R Viant
Revealing the metabolome of animal tissues using 1H nuclear magnetic resonance spectroscopy.
Methods in molecular biology (Clifton, N.J.) 2007;358():229-46.
2006: Eric S Rosenblum; Ronald S Tjeerdema; Mark R Viant
Effects of temperature on host-pathogen-drug interactions in red abalone, Haliotis rufescens, determined by 1H NMR metabolomics.
Environmental science & technology 2006;40(22):7077-84.
2006: Mark R Viant; Christopher A Pincetich; Ronald S Tjeerdema
Metabolic effects of dinoseb, diazinon and esfenvalerate in eyed eggs and alevins of Chinook salmon (Oncorhynchus tshawytscha) determined by 1H NMR metabolomics.
Aquatic toxicology (Amsterdam, Netherlands) 2006;77(4):359-71.
2006: Mark R Viant; Christopher A Pincetich; David E Hinton; Ronald S Tjeerdema
Toxic actions of dinoseb in medaka (Oryzias latipes) embryos as determined by in vivo 31P NMR, HPLC-UV and 1H NMR metabolomics.
Aquatic toxicology (Amsterdam, Netherlands) 2006;76(3-4):329-42.
2005: Mark R Viant; Bruce G Lyeth; Marion G Miller; Robert F Berman
An NMR metabolomic investigation of early metabolic disturbances following traumatic brain injury in a mammalian model.
NMR in biomedicine 2005;18(8):507-16.
2005: Heather A Harker; Mark R Viant; Frank N Keutsch; Ernest A Michael; Ryan P McLaughlin; Richard J Saykally
Water pentamer: characterization of the torsional-puckering manifold by terahertz VRT spectroscopy.
The journal of physical chemistry. A 2005;109(29):6483-97.
2005: Grant D Stentiford; Mark R Viant; Douglas G Ward; P J Johnson; Ashley Martin; Wei Wenbin; Helen J Cooper; Brett P Lyons; Stephen W Feist
Liver tumors in wild flatfish: a histopathological, proteomic, and metabolomic study.
Omics : a journal of integrative biology 2005;9(3):281-99.
2005: Christopher A Pincetich; Mark R Viant; David E Hinton; Ronald S Tjeerdema
Metabolic changes in Japanese medaka (Oryzias latipes) during embryogenesis and hypoxia as determined by in vivo 31P NMR.
Comparative biochemistry and physiology. Toxicology & pharmacology : CBP 2005;140(1):103-13.
2005: Kara R Schmelzer; Catherine S Johnson; Mark R Viant; John F Williams; Ronald S Tjeerdema
Influence of organic carbon on reductive dechlorination of thiobencarb in California rice field soils.
Pest management science 2005;61(1):68-74.
2004: Patti L TenBrook; Mark R Viant; Dirk M Holstege; J F Williams; Ronald S Tjeerdema
Characterization of California rice field soils susceptible to delayed phytotoxicity syndrome.
Bulletin of environmental contamination and toxicology 2004;73(3):448-56.
2004: Parul V Purohit; David Rocke; Mark R Viant; David L Woodruff
Discrimination models using variance-stabilizing transformation of metabolomic NMR data.
Omics : a journal of integrative biology 2004;8(2):118-30.
2003: Mark R Viant; Eric S Rosenblum; Ronald S Tieerdema
NMR-based metabolomics: a powerful approach for characterizing the effects of environmental stressors on organism health.
Environmental science & technology 2003;37(21):4982-9.
2003: Mark R Viant
Improved methods for the acquisition and interpretation of NMR metabolomic data.
Biochemical and biophysical research communications 2003;310(3):943-8.
2003: Patti L TenBrook; Shellie M Kendall; Mark R Viant; Ronald S Tjeerdema
Toxicokinetics and biotransformation of p-nitrophenol in red abalone (Haliotis rufescens).
Aquatic toxicology (Amsterdam, Netherlands) 2003;62(4):329-36.
2002: James R Millam; Christina B Craig-Veit; Marianne E Batchelder; Mark R Viant; Tina M Herbeck; Leslie W Woods
An avian bioassay for environmental estrogens: the growth response of zebra finch (Taeniopygia guttata) chick oviduct to oral estrogens.
Environmental toxicology and chemistry / SETAC 2002;21(12):2663-8.
2002: Mark R Viant; Christopher A Pincetich; Jeffrey H Walton; Ronald S Tjeerdema; David E Hinton
Utilizing in vivo nuclear magnetic resonance spectroscopy to study sublethal stress in aquatic organisms.
Marine environmental research 2002;54(3-5):553-7.
2002: Mark R Viant; Jeffrey H Walton; Patti L TenBrook; Ronald S Tjeerdema
Sublethal actions of copper in abalone (Haliotis rufescens) as characterized by in vivo 31P NMR.
Aquatic toxicology (Amsterdam, Netherlands) 2002;57(3):139-51.
2002: Allison E Quaglino; Christina B Craig-Veit; Mark R Viant; Andrea L Erichsen; D Michael Fry; James R Millam
Oral estrogen masculinizes female zebra finch song system.
Hormones and behavior 2002;41(2):236-41.
2001: Mark R Viant; Eric S Rosenblum; Ronald S Tjeerdema
Optimized method for the determination of phosphoarginine in abalone tissue by high-performance liquid chromatography.
Journal of chromatography. B, Biomedical sciences and applications 2001;765(1):107-11.
2001: Frank N Keutsch; R S Fellers; Mac G Brown; Mark R Viant; Poul B Petersen; Richard J Saykally
Hydrogen bond breaking dynamics of the water trimer in the translational and librational band region of liquid water.
Journal of the American Chemical Society 2001;123(25):5938-41.
2000: Mark R Viant; James R Millam; Mary E Delany; D Michael Fry
Regulation of brain-derived neurotrophic factor messenger RNA levels in avian hypothalamic slice cultures.
Neuroscience 2000;99(2):373-80.