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Marc Vidal
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30
Hill, David
17
Rual, Jean-François
16
Walhout, Albertha
13
Cusick, Michael
12
Dupuy, Denis
12
Bertin, Nicolas
11
Vandenhaute, Jean
10
Vaglio, Philippe
10
Lamesch, Philippe
10
Hao, Tong
9
Boulton, Simon
9
Doucette-Stamm, Lynn
9
Reboul, Jérôme
8
Milstein, Stuart
8
Roth, Frederick
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All Publications
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2009: Dreze Matija; Charloteaux Benoit; Milstein Stuart; Vidalain Pierre-Olivier; Yildirim Muhammed A; Zhong Quan; Svrzikapa Nenad; Romero Viviana; Laloux Géraldine; Brasseur Robert; Vandenhaute Jean; Boxem Mike; Cusick Michael E; Hill David E; Vidal Marc
'Edgetic' perturbation of a C. elegans BCL2 ortholog.
Nature methods 2009;6(11):843-9.
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2009: Tonikian Raffi; Xin Xiaofeng; Toret Christopher P; Gfeller David; Landgraf Christiane; Panni Simona; Paoluzi Serena; Castagnoli Luisa; Currell Bridget; Seshagiri Somasekar; Yu Haiyuan; Winsor Barbara; Vidal Marc; Gerstein Mark B; Bader Gary D; Volkmer Rudolf; Cesareni Gianni; Drubin David G; Kim Philip M; Sidhu Sachdev S; Boone Charles
Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins.
PLoS biology 2009;7(10):e1000218.
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2009: Markson Gabriel; Kiel Christina; Hyde Russell; Brown Stephanie; Charalabous Panagoula; Bremm Anja; Semple Jennifer; Woodsmith Jonathan; Duley Simon; Salehi-Ashtiani Kourosh; Vidal Marc; Komander David; Serrano Luis; Lehner Paul; Sanderson Christopher M
Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network.
Genome research 2009;19(10):1905-11.
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2009: De Nicolo Arcangela; Parisini Emilio; Zhong Quan; Dalla Palma Maurizia; Stoeckert Kathryn A; Domchek Susan M; Nathanson Katherine L; Caligo Maria A; Vidal Marc; Cusick Michael E; Garber Judy E
Multimodal assessment of protein functional deficiency supports pathogenicity of BRCA1 p.V1688del.
Cancer research 2009;69(17):7030-7.
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2009: Manichaikul Ani; Ghamsari Lila; Hom Erik F Y; Lin Chenwei; Murray Ryan R; Chang Roger L; Balaji S; Hao Tong; Shen Yun; Chavali Arvind K; Thiele Ines; Yang Xinping; Fan Changyu; Mello Elizabeth; Hill David E; Vidal Marc; Salehi-Ashtiani Kourosh; Papin Jason A
Metabolic network analysis integrated with transcript verification for sequenced genomes.
Nature methods 2009;6(8):589-92.
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2009: Xin Xiaofeng; Rual Jean-François; Hirozane-Kishikawa Tomoko; Hill David E; Vidal Marc; Boone Charles; Thierry-Mieg Nicolas
Shifted Transversal Design smart-pooling for high coverage interactome mapping.
Genome research 2009;19(7):1262-9.
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2009: Carvunis Anne-Ruxandra; Gomez Elisa; Thierry-Mieg Nicolas; Trilling Laurent; Vidal Marc
[Systems biology: from yesterday's concepts to tomorrow's discoveries]
Médecine sciences : M/S 2009;25(6-7):578-84.
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2009: van der Voet Monique; Berends Christian W H; Perreault Audrey; Nguyen-Ngoc Tu; Gönczy Pierre; Vidal Marc; Boxem Mike; van den Heuvel Sander
NuMA-related LIN-5, ASPM-1, calmodulin and dynein promote meiotic spindle rotation independently of cortical LIN-5/GPR/Galpha.
Nature cell biology 2009;11(3):269-77.
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2009: Cusick Michael E; Yu Haiyuan; Smolyar Alex; Venkatesan Kavitha; Carvunis Anne-Ruxandra; Simonis Nicolas; Rual Jean-François; Borick Heather; Braun Pascal; Dreze Matija; Vandenhaute Jean; Galli Mary; Yazaki Junshi; Hill David E; Ecker Joseph R; Roth Frederick P; Vidal Marc
Literature-curated protein interaction datasets.
Nature methods 2009;6(1):39-46.
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2009: Braun Pascal; Tasan Murat; Dreze Matija; Barrios-Rodiles Miriam; Lemmens Irma; Yu Haiyuan; Sahalie Julie M; Murray Ryan R; Roncari Luba; de Smet Anne-Sophie; Venkatesan Kavitha; Rual Jean-François; Vandenhaute Jean; Cusick Michael E; Pawson Tony; Hill David E; Tavernier Jan; Wrana Jeffrey L; Roth Frederick P; Vidal Marc
An experimentally derived confidence score for binary protein-protein interactions.
Nature methods 2009;6(1):91-7.
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2009: Zhong Quan; Simonis Nicolas; Li Qian-Ru; Charloteaux Benoit; Heuze Fabien; Klitgord Niels; Tam Stanley; Yu Haiyuan; Venkatesan Kavitha; Mou Danny; Swearingen Venus; Yildirim Muhammed A; Yan Han; Dricot Amélie; Szeto David; Lin Chenwei; Hao Tong; Fan Changyu; Milstein Stuart; Dupuy Denis; Brasseur Robert; Hill David E; Cusick Michael E; Vidal Marc
Edgetic perturbation models of human inherited disorders.
Molecular systems biology 2009;5():321.
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2008: Li Siming; Liu Chang; Li Na; Hao Tong; Han Ting; Hill David E; Vidal Marc; Lin Jiandie D
Genome-wide coactivation analysis of PGC-1alpha identifies BAF60a as a regulator of hepatic lipid metabolism.
Cell metabolism 2008;8(2):105-17.
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2008: Li Qian-Ru; Carvunis Anne-Ruxandra; Yu Haiyuan; Han Jing-Dong J; Zhong Quan; Simonis Nicolas; Tam Stanley; Hao Tong; Klitgord Niels J; Dupuy Denis; Mou Danny; Wapinski Ilan; Regev Aviv; Hill David E; Cusick Michael E; Vidal Marc
Revisiting the Saccharomyces cerevisiae predicted ORFeome.
Genome research 2008;18(8):1294-303.
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2008: Braun Pascal; Rietman Edward; Vidal Marc
Networking metabolites and diseases.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(29):9849-50.
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2008: Pagliarini David J; Calvo Sarah E; Chang Betty; Sheth Sunil A; Vafai Scott B; Ong Shao-En; Walford Geoffrey A; Sugiana Canny; Boneh Avihu; Chen William K; Hill David E; Vidal Marc; Evans James G; Thorburn David R; Carr Steven A; Mootha Vamsi K
A mitochondrial protein compendium elucidates complex I disease biology.
Cell 2008;134(1):112-23.
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2008: Salehi-Ashtiani Kourosh; Yang Xinping; Derti Adnan; Tian Weidong; Hao Tong; Lin Chenwei; Makowski Kathryn; Shen Lei; Murray Ryan R; Szeto David; Tusneem Nadeem; Smith Douglas R; Cusick Michael E; Hill David E; Roth Frederick P; Vidal Marc
Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.
Nature methods 2008;5(7):597-600.
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2008: Djebali Sarah; Kapranov Philipp; Foissac Sylvain; Lagarde Julien; Reymond Alexandre; Ucla Catherine; Wyss Carine; Drenkow Jorg; Dumais Erica; Murray Ryan R; Lin Chenwei; Szeto David; Denoeud France; Calvo Miquel; Frankish Adam; Harrow Jennifer; Makrythanasis Periklis; Vidal Marc; Salehi-Ashtiani Kourosh; Antonarakis Stylianos E; Gingeras Thomas R; Guigó Roderic
Efficient targeted transcript discovery via array-based normalization of RACE libraries.
Nature methods 2008;5(7):629-35.
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2008: Yildirim Muhammed A; Vidal Marc
Systems engineering to systems biology.
Molecular systems biology 2008;4():185.
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2007: Pujana Miguel Angel; Han Jing-Dong J; Starita Lea M; Stevens Kristen N; Tewari Muneesh; Ahn Jin Sook; Rennert Gad; Moreno Víctor; Kirchhoff Tomas; Gold Bert; Assmann Volker; Elshamy Wael M; Rual Jean-François; Levine Douglas; Rozek Laura S; Gelman Rebecca S; Gunsalus Kristin C; Greenberg Roger A; Sobhian Bijan; Bertin Nicolas; Venkatesan Kavitha; Ayivi-Guedehoussou Nono; Solé Xavier; Hernández Pilar; Lázaro Conxi; Nathanson Katherine L; Weber Barbara L; Cusick Michael E; Hill David E; Offit Kenneth; Livingston David M; Gruber Stephen B; Parvin Jeffrey D; Vidal Marc
Network modeling links breast cancer susceptibility and centrosome dysfunction.
Nature genetics 2007;39(11):1338-49.
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2007: Yildirim Muhammed A; Goh Kwang-Il; Cusick Michael E; Barabási Albert-László; Vidal Marc
Drug-target network.
Nature biotechnology 2007;25(10):1119-26.
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2007: Orchard Sandra; Salwinski Lukasz; Kerrien Samuel; Montecchi-Palazzi Luisa; Oesterheld Matthias; Stümpflen Volker; Ceol Arnaud; Chatr-aryamontri Andrew; Armstrong John; Woollard Peter; Salama John J; Moore Susan; Wojcik Jérôme; Bader Gary D; Vidal Marc; Cusick Michael E; Gerstein Mark; Gavin Anne-Claude; Superti-Furga Giulio; Greenblatt Jack; Bader Joel; Uetz Peter; Tyers Mike; Legrain Pierre; Fields Stan; Mulder Nicola; Gilson Michael; Niepmann Michael; Burgoon Lyle; De Las Rivas Javier; Prieto Carlos; Perreau Victoria M; Hogue Chris; Mewes Hans-Werner; Apweiler Rolf; Xenarios Ioannis; Eisenberg David; Cesareni Gianni; Hermjakob Henning
The minimum information required for reporting a molecular interaction experiment (MIMIx).
Nature biotechnology 2007;25(8):894-8.
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2007: Simarro Maria; Mauger David; Rhee Kirsten; Pujana Miguel A; Kedersha Nancy L; Yamasaki Satoshi; Cusick Michael E; Vidal Marc; Garcia-Blanco Mariano A; Anderson Paul
Fas-activated serine/threonine phosphoprotein (FAST) is a regulator of alternative splicing.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(27):11370-5.
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2007: Boehm Jesse S; Zhao Jean J; Yao Jun; Kim So Young; Firestein Ron; Dunn Ian F; Sjostrom Sarah K; Garraway Levi A; Weremowicz Stanislawa; Richardson Andrea L; Greulich Heidi; Stewart Carly J; Mulvey Laura A; Shen Rhine R; Ambrogio Lauren; Hirozane-Kishikawa Tomoko; Hill David E; Vidal Marc; Meyerson Matthew; Grenier Jennifer K; Hinkle Greg; Root David E; Roberts Thomas M; Lander Eric S; Polyak Kornelia; Hahn William C
Integrative genomic approaches identify IKBKE as a breast cancer oncogene.
Cell 2007;129(6):1065-79.
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2007: Bertin Nicolas; Simonis Nicolas; Dupuy Denis; Cusick Michael E; Han Jing-Dong J; Fraser Hunter B; Roth Frederick P; Vidal Marc
Confirmation of organized modularity in the yeast interactome.
PLoS biology 2007;5(6):e153.
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2007: Dupuy Denis; Bertin Nicolas; Hidalgo César A; Venkatesan Kavitha; Tu Domena; Lee David; Rosenberg Jennifer; Svrzikapa Nenad; Blanc Aurélie; Carnec Alain; Carvunis Anne-Ruxandra; Pulak Rock; Shingles Jane; Reece-Hoyes John; Hunt-Newbury Rebecca; Viveiros Ryan; Mohler William A; Tasan Murat; Roth Frederick P; Le Peuch Christian; Hope Ian A; Johnsen Robert; Moerman Donald G; Barabási Albert-László; Baillie David; Vidal Marc
Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans.
Nature biotechnology 2007;25(6):663-8.
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2007: Goh Kwang-Il; Cusick Michael E; Valle David; Childs Barton; Vidal Marc; Barabási Albert-László
The human disease network.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(21):8685-90.
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2007: Calderwood Michael A; Venkatesan Kavitha; Xing Li; Chase Michael R; Vazquez Alexei; Holthaus Amy M; Ewence Alexandra E; Li Ning; Hirozane-Kishikawa Tomoko; Hill David E; Vidal Marc; Kieff Elliott; Johannsen Eric
Epstein-Barr virus and virus human protein interaction maps.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(18):7606-11.
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2007: Lamesch Philippe; Li Ning; Milstein Stuart; Fan Changyu; Hao Tong; Szabo Gabor; Hu Zhenjun; Venkatesan Kavitha; Bethel Graeme; Martin Paul; Rogers Jane; Lawlor Stephanie; McLaren Stuart; Dricot Amélie; Borick Heather; Cusick Michael E; Vandenhaute Jean; Dunham Ian; Hill David E; Vidal Marc
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.
Genomics 2007;89(3):307-15.
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2007: Yu Anan; Rual Jean-François; Tamai Keiko; Harada Yuko; Vidal Marc; He Xi; Kirchhausen Tomas
Association of Dishevelled with the clathrin AP-2 adaptor is required for Frizzled endocytosis and planar cell polarity signaling.
Developmental cell 2007;12(1):129-41.
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2007: Li Ji; Tewari Muneesh; Vidal Marc; Lee Siu Sylvia
The 14-3-3 protein FTT-2 regulates DAF-16 in Caenorhabditis elegans.
Developmental biology 2007;301(1):82-91.
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2007: Kerrien Samuel; Orchard Sandra; Montecchi-Palazzi Luisa; Aranda Bruno; Quinn Antony F; Vinod Nisha; Bader Gary D; Xenarios Ioannis; Wojcik Jérôme; Sherman David; Tyers Mike; Salama John J; Moore Susan; Ceol Arnaud; Chatr-Aryamontri Andrew; Oesterheld Matthias; Stümpflen Volker; Salwinski Lukasz; Nerothin Jason; Cerami Ethan; Cusick Michael E; Vidal Marc; Gilson Michael; Armstrong John; Woollard Peter; Hogue Christopher; Eisenberg David; Cesareni Gianni; Apweiler Rolf; Hermjakob Henning
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.
BMC biology 2007;5():44.
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2007: Wang Haidong; Segal Eran; Ben-Hur Asa; Li Qian-Ru; Vidal Marc; Koller Daphne
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale.
Genome biology 2007;8(9):R192.
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2007: Ceron Julian; Rual Jean-François; Chandra Abha; Dupuy Denis; Vidal Marc; van den Heuvel Sander
Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity.
BMC developmental biology 2007;7():30.
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2007: Reece-Hoyes John S; Shingles Jane; Dupuy Denis; Grove Christian A; Walhout Albertha J M; Vidal Marc; Hope Ian A
Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns.
BMC genomics 2007;8():27.
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2006: Braun Pascal; Cusick Michael E; Vidal Marc
QUICKstep and GS-TAP: new moves for protein-interaction analysis.
Nature methods 2006;3(12):975-6.
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2006: Kritikou Ekaterini A; Milstein Stuart; Vidalain Pierre-Olivier; Lettre Guillaume; Bogan Erica; Doukoumetzidis Kimon; Gray Phillip; Chappell Thomas G; Vidal Marc; Hengartner Michael O
C. elegans GLA-3 is a novel component of the MAP kinase MPK-1 signaling pathway required for germ cell survival.
Genes & development 2006;20(16):2279-92.
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2006: Haynes Chad; Oldfield Christopher J; Ji Fei; Klitgord Niels; Cusick Michael E; Radivojac Predrag; Uversky Vladimir N; Vidal Marc; Iakoucheva Lilia M
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.
PLoS computational biology 2006;2(8):e100.
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2006: Lim Janghoo; Hao Tong; Shaw Chad; Patel Akash J; Szabó Gábor; Rual Jean-François; Fisk C Joseph; Li Ning; Smolyar Alex; Hill David E; Barabási Albert-László; Vidal Marc; Zoghbi Huda Y
A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration.
Cell 2006;125(4):801-14.
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2006: Temple Gary; Lamesch Philippe; Milstein Stuart; Hill David E; Wagner Lukas; Moore Troy; Vidal Marc
From genome to proteome: developing expression clone resources for the human genome.
Human molecular genetics 2006;15 Spec No 1():R31-43.
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2006: Piano Fabio; Gunsalus Kristin C; Hill David E; Vidal Marc
C. elegans network biology: a beginning.
WormBook : the online review of C. elegans biology 2006;():1-20.
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2006: Vidal M
[Network "interactome"]
Bulletin et mémoires de l'Académie royale de médecine de Belgique 2006;161(3-4):199-210; discussion 210-2.
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2005: Gillette William K; Esposito Dominic; Frank Peter H; Zhou Ming; Yu Li-Rong; Jozwik Catherine; Zhang Xiuying; McGowan Brighid; Jacobowitz David M; Pollard Harvey B; Hao Tong; Hill David E; Vidal Marc; Conrads Thomas P; Veenstra Timothy D; Hartley James L
Pooled ORF expression technology (POET): using proteomics to screen pools of open reading frames for protein expression.
Molecular & cellular proteomics : MCP 2005;4(11):1647-52.
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2005: Davison Ewa M; Harrison Melissa M; Walhout Albertha J M; Vidal Marc; Horvitz H Robert
lin-8, which antagonizes Caenorhabditis elegans Ras-mediated vulval induction, encodes a novel nuclear protein that interacts with the LIN-35 Rb protein.
Genetics 2005;171(3):1017-31.
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2005: Rual Jean-François; Venkatesan Kavitha; Hao Tong; Hirozane-Kishikawa Tomoko; Dricot Amélie; Li Ning; Berriz Gabriel F; Gibbons Francis D; Dreze Matija; Ayivi-Guedehoussou Nono; Klitgord Niels; Simon Christophe; Boxem Mike; Milstein Stuart; Rosenberg Jennifer; Goldberg Debra S; Zhang Lan V; Wong Sharyl L; Franklin Giovanni; Li Siming; Albala Joanna S; Lim Janghoo; Fraughton Carlene; Llamosas Estelle; Cevik Sebiha; Bex Camille; Lamesch Philippe; Sikorski Robert S; Vandenhaute Jean; Zoghbi Huda Y; Smolyar Alex; Bosak Stephanie; Sequerra Reynaldo; Doucette-Stamm Lynn; Cusick Michael E; Hill David E; Roth Frederick P; Vidal Marc
Towards a proteome-scale map of the human protein-protein interaction network.
Nature 2005;437(7062):1173-8.
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2005: Cusick Michael E; Klitgord Niels; Vidal Marc; Hill David E
Interactome: gateway into systems biology.
Human molecular genetics 2005;14 Spec No. 2():R171-81.
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2005: Scholtens Denise; Vidal Marc; Gentleman Robert
Local modeling of global interactome networks.
Bioinformatics (Oxford, England) 2005;21(17):3548-57.
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2005: Gunsalus Kristin C; Ge Hui; Schetter Aaron J; Goldberg Debra S; Han Jing-Dong J; Hao Tong; Berriz Gabriel F; Bertin Nicolas; Huang Jerry; Chuang Ling-Shiang; Li Ning; Mani Ramamurthy; Hyman Anthony A; Sönnichsen Birte; Echeverri Christophe J; Roth Frederick P; Vidal Marc; Piano Fabio
Predictive models of molecular machines involved in Caenorhabditis elegans early embryogenesis.
Nature 2005;436(7052):861-5.
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2005: Sieburth Derek; Ch'ng QueeLim; Dybbs Michael; Tavazoie Masoud; Kennedy Scott; Wang Duo; Dupuy Denis; Rual Jean-François; Hill David E; Vidal Marc; Ruvkun Gary; Kaplan Joshua M
Systematic analysis of genes required for synapse structure and function.
Nature 2005;436(7050):510-7.
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2005: Han Jing-Dong J; Dupuy Denis; Bertin Nicolas; Cusick Michael E; Vidal Marc
Effect of sampling on topology predictions of protein-protein interaction networks.
Nature biotechnology 2005;23(7):839-44.
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2005: Caruso Marie-Elaine; Jenna Sarah; Beaulne Simon; Lee Eun-Hye; Bergeron Anne; Chauve Cédric; Roby Philippe; Rual Jean-François; Hill David E; Vidal Marc; Bossé Roger; Chevet Eric
Biochemical clustering of monomeric GTPases of the Ras superfamily.
Molecular & cellular proteomics : MCP 2005;4(7):936-44.
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2005: Milstein Stuart; Vidal Marc
Perturbing interactions.
Nature methods 2005;2(6):412-4.
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2005: Kim John K; Gabel Harrison W; Kamath Ravi S; Tewari Muneesh; Pasquinelli Amy; Rual Jean-François; Kennedy Scott; Dybbs Michael; Bertin Nicolas; Kaplan Joshua M; Vidal Marc; Ruvkun Gary
Functional genomic analysis of RNA interference in C. elegans.
Science (New York, N.Y.) 2005;308(5725):1164-7.
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2005: Wei Chaochun; Lamesch Philippe; Arumugam Manimozhiyan; Rosenberg Jennifer; Hu Ping; Vidal Marc; Brent Michael R
Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.
Genome research 2005;15(4):577-82.
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2005: Jenna S; Caruso M-E; Emadali A; Nguyên D T; Dominguez M; Li S; Roy R; Reboul J; Vidal M; Tzimas G N; Bossé R; Chevet E
Regulation of membrane trafficking by a novel Cdc42-related protein in Caenorhabditis elegans epithelial cells.
Molecular biology of the cell 2005;16(4):1629-39.
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2005: Vidal Marc
Interactome modeling.
FEBS letters 2005;579(8):1834-8.
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2005: Fernandez Anita G; Gunsalus Kristin C; Huang Jerry; Chuang Ling-Shiang; Ying Nancy; Liang Hsiao-Lan; Tang Caroline; Schetter Aaron J; Zegar Charles; Rual Jean-François; Hill David E; Reinke Valerie; Vidal Marc; Piano Fabio
New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones.
Genome research 2005;15(2):250-9.
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2005: Fox Rebecca M; Von Stetina Stephen E; Barlow Susan J; Shaffer Christian; Olszewski Kellen L; Moore Jason H; Dupuy Denis; Vidal Marc; Miller David M
A gene expression fingerprint of C. elegans embryonic motor neurons.
BMC genomics 2005;6(1):42.
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2004: Wong Sharyl L; Zhang Lan V; Tong Amy H Y; Li Zhijian; Goldberg Debra S; King Oliver D; Lesage Guillaume; Vidal Marc; Andrews Brenda; Bussey Howard; Boone Charles; Roth Frederick P
Combining biological networks to predict genetic interactions.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(44):15682-7.
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2004: Dricot Amélie; Rual Jean-François; Lamesch Philippe; Bertin Nicolas; Dupuy Denis; Hao Tong; Lambert Christophe; Hallez Régis; Delroisse Jean-Marc; Vandenhaute Jean; Lopez-Goñi Ignacio; Moriyon Ignacio; Garcia-Lobo Juan M; Sangari Félix J; Macmillan Alastair P; Cutler Sally J; Whatmore Adrian M; Bozak Stephanie; Sequerra Reynaldo; Doucette-Stamm Lynn; Vidal Marc; Hill David E; Letesson Jean-Jacques; De Bolle Xavier
Generation of the Brucella melitensis ORFeome version 1.1.
Genome research 2004;14(10B):2201-6.
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2004: Dupuy Denis; Li Qian-Ru; Deplancke Bart; Boxem Mike; Hao Tong; Lamesch Philippe; Sequerra Reynaldo; Bosak Stephanie; Doucette-Stamm Lynn; Hope Ian A; Hill David E; Walhout Albertha J M; Vidal Marc
A first version of the Caenorhabditis elegans Promoterome.
Genome research 2004;14(10B):2169-75.
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2004: Rual Jean-François; Ceron Julian; Koreth John; Hao Tong; Nicot Anne-Sophie; Hirozane-Kishikawa Tomoko; Vandenhaute Jean; Orkin Stuart H; Hill David E; van den Heuvel Sander; Vidal Marc
Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.
Genome research 2004;14(10B):2162-8.
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2004: Rual Jean-François; Hirozane-Kishikawa Tomoko; Hao Tong; Bertin Nicolas; Li Siming; Dricot Amélie; Li Ning; Rosenberg Jennifer; Lamesch Philippe; Vidalain Pierre-Olivier; Clingingsmith Tracey R; Hartley James L; Esposito Dominic; Cheo David; Moore Troy; Simmons Blake; Sequerra Reynaldo; Bosak Stephanie; Doucette-Stamm Lynn; Le Peuch Christian; Vandenhaute Jean; Cusick Michael E; Albala Joanna S; Hill David E; Vidal Marc
Human ORFeome version 1.1: a platform for reverse proteomics.
Genome research 2004;14(10B):2128-35.
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2004: Luan Chi-Hao; Qiu Shihong; Finley James B; Carson Mike; Gray Rita J; Huang Wenying; Johnson David; Tsao Jun; Reboul Jérôme; Vaglio Philippe; Hill David E; Vidal Marc; Delucas Lawrence J; Luo Ming
High-throughput expression of C. elegans proteins.
Genome research 2004;14(10B):2102-10.
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2004: Deplancke Bart; Dupuy Denis; Vidal Marc; Walhout Albertha J M
A gateway-compatible yeast one-hybrid system.
Genome research 2004;14(10B):2093-101.
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2004: Hope Ian A; Stevens Jonathan; Garner Anna; Hayes Josie; Cheo David L; Brasch Michael A; Vidal Marc
Feasibility of genome-scale construction of promoter::reporter gene fusions for expression in Caenorhabditis elegans using a multisite gateway recombination system.
Genome research 2004;14(10B):2070-5.
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2004: Lamesch Philippe; Milstein Stuart; Hao Tong; Rosenberg Jennifer; Li Ning; Sequerra Reynaldo; Bosak Stephanie; Doucette-Stamm Lynn; Vandenhaute Jean; Hill David E; Vidal Marc
C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions.
Genome research 2004;14(10B):2064-9.
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2004: Hill David E; Brasch Michael A; del Campo Anthony A; Doucette-Stamm Lynn; Garrels James I; Glaven Judith; Hartley James L; Hudson James R; Moore Troy; Vidal Marc
Academia-industry collaboration: an integral element for building "omic" resources.
Genome research 2004;14(10B):2010-4.
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2004: Brasch Michael A; Hartley James L; Vidal Marc
ORFeome cloning and systems biology: standardized mass production of the parts from the parts-list.
Genome research 2004;14(10B):2001-9.
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2004: Han Jing-Dong J; Bertin Nicolas; Hao Tong; Goldberg Debra S; Berriz Gabriel F; Zhang Lan V; Dupuy Denis; Walhout Albertha J M; Cusick Michael E; Roth Frederick P; Vidal Marc
Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Nature 2004;430(6995):88-93.
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2004: Yu Haiyuan; Luscombe Nicholas M; Lu Hao Xin; Zhu Xiaowei; Xia Yu; Han Jing-Dong J; Bertin Nicolas; Chung Sambath; Vidal Marc; Gerstein Mark
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.
Genome research 2004;14(6):1107-18.
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2004: Fisk Green R; Lorson M; Walhout A J M; Vidal M; van den Heuvel S
Identification of critical domains and putative partners for the Caenorhabditis elegans spindle component LIN-5.
Molecular genetics and genomics : MGG 2004;271(5):532-44.
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2004: Vidalain Pierre-Olivier; Boxem Mike; Ge Hui; Li Siming; Vidal Marc
Increasing specificity in high-throughput yeast two-hybrid experiments.
Methods (San Diego, Calif.) 2004;32(4):363-70.
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2004: Rual Jean-François; Hill David E; Vidal Marc
ORFeome projects: gateway between genomics and omics.
Current opinion in chemical biology 2004;8(1):20-5.
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2004: Tewari Muneesh; Hu Patrick J; Ahn Jin Sook; Ayivi-Guedehoussou Nono; Vidalain Pierre-Olivier; Li Siming; Milstein Stuart; Armstrong Chris M; Boxem Mike; Butler Maurice D; Busiguina Svetlana; Rual Jean-François; Ibarrola Nieves; Chaklos Sabrina T; Bertin Nicolas; Vaglio Philippe; Edgley Mark L; King Kevin V; Albert Patrice S; Vandenhaute Jean; Pandey Akhilesh; Riddle Donald L; Ruvkun Gary; Vidal Marc
Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network.
Molecular cell 2004;13(4):469-82.
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2004: Hermjakob Henning; Montecchi-Palazzi Luisa; Bader Gary; Wojcik Jérôme; Salwinski Lukasz; Ceol Arnaud; Moore Susan; Orchard Sandra; Sarkans Ugis; von Mering Christian; Roechert Bernd; Poux Sylvain; Jung Eva; Mersch Henning; Kersey Paul; Lappe Michael; Li Yixue; Zeng Rong; Rana Debashis; Nikolski Macha; Husi Holger; Brun Christine; Shanker K; Grant Seth G N; Sander Chris; Bork Peer; Zhu Weimin; Pandey Akhilesh; Brazma Alvis; Jacq Bernard; Vidal Marc; Sherman David; Legrain Pierre; Cesareni Gianni; Xenarios Ioannis; Eisenberg David; Steipe Boris; Hogue Chris; Apweiler Rolf
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.
Nature biotechnology 2004;22(2):177-83.
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2004: Safi Alexias; Vandromme Marie; Caussanel Sabine; Valdacci Laure; Baas Dominique; Vidal Marc; Brun Gilbert; Schaeffer Laurent; Goillot Evelyne
Role for the pleckstrin homology domain-containing protein CKIP-1 in phosphatidylinositol 3-kinase-regulated muscle differentiation.
Molecular and cellular biology 2004;24(3):1245-55.
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2004: Boulton Simon J; Martin Julie S; Polanowska Jolanta; Hill David E; Gartner Anton; Vidal Marc
BRCA1/BARD1 orthologs required for DNA repair in Caenorhabditis elegans.
Current biology : CB 2004;14(1):33-9.
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2004: Li Siming; Armstrong Christopher M; Bertin Nicolas; Ge Hui; Milstein Stuart; Boxem Mike; Vidalain Pierre-Olivier; Han Jing-Dong J; Chesneau Alban; Hao Tong; Goldberg Debra S; Li Ning; Martinez Monica; Rual Jean-François; Lamesch Philippe; Xu Lai; Tewari Muneesh; Wong Sharyl L; Zhang Lan V; Berriz Gabriel F; Jacotot Laurent; Vaglio Philippe; Reboul Jérôme; Hirozane-Kishikawa Tomoko; Li Qianru; Gabel Harrison W; Elewa Ahmed; Baumgartner Bridget; Rose Debra J; Yu Haiyuan; Bosak Stephanie; Sequerra Reynaldo; Fraser Andrew; Mango Susan E; Saxton William M; Strome Susan; Van Den Heuvel Sander; Piano Fabio; Vandenhaute Jean; Sardet Claude; Gerstein Mark; Doucette-Stamm Lynn; Gunsalus Kristin C; Harper J Wade; Cusick Michael E; Roth Frederick P; Hill David E; Vidal Marc
A map of the interactome network of the metazoan C. elegans.
Science (New York, N.Y.) 2004;303(5657):540-3.
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2003: Ge Hui; Walhout Albertha J M; Vidal Marc
Integrating 'omic' information: a bridge between genomics and systems biology.
Trends in genetics : TIG 2003;19(10):551-60.
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2003: Tewari Muneesh; Vidal Marc
RNAi on the apoptosis TRAIL: the mammalian cell genetic screen comes of age.
Developmental cell 2003;5(4):534-5.
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2003: Xu Lai; Wei Yue; Reboul Jerome; Vaglio Philippe; Shin Tae-Ho; Vidal Marc; Elledge Stephen J; Harper J Wade
BTB proteins are substrate-specific adaptors in an SCF-like modular ubiquitin ligase containing CUL-3.
Nature 2003;425(6955):316-21.
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2003: Huang Raymond Y; Boulton Simon J; Vidal Marc; Almo Steve C; Bresnick Anne R; Chance Mark R
High-throughput expression, purification, and characterization of recombinant Caenorhabditis elegans proteins.
Biochemical and biophysical research communications 2003;307(4):928-34.
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2003: Reboul Jérôme; Vaglio Philippe; Rual Jean-François; Lamesch Philippe; Martinez Monica; Armstrong Christopher M; Li Siming; Jacotot Laurent; Bertin Nicolas; Janky Rekin's; Moore Troy; Hudson James R; Hartley James L; Brasch Michael A; Vandenhaute Jean; Boulton Simon; Endress Gregory A; Jenna Sarah; Chevet Eric; Papasotiropoulos Vasilis; Tolias Peter P; Ptacek Jason; Snyder Mike; Huang Raymond; Chance Mark R; Lee Hongmei; Doucette-Stamm Lynn; Hill David E; Vidal Marc
C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.
Nature genetics 2003;34(1):35-41.
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2003: Vaglio Philippe; Lamesch Philippe; Reboul Jérôme; Rual Jean-François; Martinez Monica; Hill David; Vidal Marc
WorfDB: the Caenorhabditis elegans ORFeome Database.
Nucleic acids research 2003;31(1):237-40.
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2002: Walhout Albertha J M; Reboul Jérôme; Shtanko Olena; Bertin Nicolas; Vaglio Philippe; Ge Hui; Lee Hongmei; Doucette-Stamm Lynn; Gunsalus Kristin C; Schetter Aaron J; Morton Diane G; Kemphues Kenneth J; Reinke Valerie; Kim Stuart K; Piano Fabio; Vidal Marc
Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline.
Current biology : CB 2002;12(22):1952-8.
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2002: Hofmann E Randal; Milstein Stuart; Boulton Simon J; Ye Mianjia; Hofmann Jen J; Stergiou Lilli; Gartner Anton; Vidal Marc; Hengartner Michael O
Caenorhabditis elegans HUS-1 is a DNA damage checkpoint protein required for genome stability and EGL-1-mediated apoptosis.
Current biology : CB 2002;12(22):1908-18.
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2002: Chance Mark R; Bresnick Anne R; Burley Stephen K; Jiang Jian-Sheng; Lima Christopher D; Sali Andrej; Almo Steven C; Bonanno Jeffrey B; Buglino John A; Boulton Simon; Chen Hua; Eswar Narayanan; He Guoshun; Huang Raymond; Ilyin Valentin; McMahan Linda; Pieper Ursula; Ray Soumya; Vidal Marc; Wang Li Kai
Structural genomics: a pipeline for providing structures for the biologist.
Protein science : a publication of the Protein Society 2002;11(4):723-38.
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2002: Huang Nancy N; Mootz Darcy E; Walhout Albertha J M; Vidal Marc; Hunter Craig P
MEX-3 interacting proteins link cell polarity to asymmetric gene expression in Caenorhabditis elegans.
Development (Cambridge, England) 2002;129(3):747-59.
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2002: Boulton Simon J; Gartner Anton; Reboul Jérôme; Vaglio Philippe; Dyson Nick; Hill David E; Vidal Marc
Combined functional genomic maps of the C. elegans DNA damage response.
Science (New York, N.Y.) 2002;295(5552):127-31.
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2002: Endoh Hideki; Vincent Sylvie; Jacob Yves; Réal Eléonore; Walhout Albertha J M; Vidal Marc
Integrated version of reverse two-hybrid system for the postproteomic era.
Methods in enzymology 2002;350():525-45.
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2001: Matthews L R; Vaglio P; Reboul J; Ge H; Davis B P; Garrels J; Vincent S; Vidal M
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".
Genome research 2001;11(12):2120-6.
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2001: Ge H; Liu Z; Church G M; Vidal M
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
Nature genetics 2001;29(4):482-6.
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2001: Cheng H; Cenciarelli C; Shao Z; Vidal M; Parks W P; Pagano M; Cheng-Mayer C
Human T cell leukemia virus type 1 Tax associates with a molecular chaperone complex containing hTid-1 and Hsp70.
Current biology : CB 2001;11(22):1771-5.
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2001: Davy A; Bello P; Thierry-Mieg N; Vaglio P; Hitti J; Doucette-Stamm L; Thierry-Mieg D; Reboul J; Boulton S; Walhout A J; Coux O; Vidal M
A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome.
EMBO reports 2001;2(9):821-8.
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2001: Fuchs K P; Bommer G; Dumont E; Christoph B; Vidal M; Kremmer E; Kempkes B
Mutational analysis of the J recombination signal sequence binding protein (RBP-J)/Epstein-Barr virus nuclear antigen 2 (EBNA2) and RBP-J/Notch interaction.
European journal of biochemistry / FEBS 2001;268(17):4639-46.
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2001: Yin H; Morioka H; Towle C A; Vidal M; Watanabe T; Weissbach L
Evidence that HAX-1 is an interleukin-1 alpha N-terminal binding protein.
Cytokine 2001;15(3):122-37.
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2001: Kennedy B K; Liu O W; Dick F A; Dyson N; Harlow E; Vidal M
Histone deacetylase-dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(15):8720-5.
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2001: Walhout A J; Vidal M
High-throughput yeast two-hybrid assays for large-scale protein interaction mapping.
Methods (San Diego, Calif.) 2001;24(3):297-306.
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2001: Reboul J; Vaglio P; Tzellas N; Thierry-Mieg N; Moore T; Jackson C; Shin-i T; Kohara Y; Thierry-Mieg D; Thierry-Mieg J; Lee H; Hitti J; Doucette-Stamm L; Hartley J L; Temple G F; Brasch M A; Vandenhaute J; Lamesch P E; Hill D E; Vidal M
Open-reading-frame sequence tags (OSTs) support the existence of at least 17,300 genes in C. elegans.
Nature genetics 2001;27(3):332-6.
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2001: Boulton S J; Vincent S; Vidal M
Use of protein-interaction maps to formulate biological questions.
Current opinion in chemical biology 2001;5(1):57-62.
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2000: Ferretti S; Lee S K; MacCraith B D; Oliva A G; Richardson D J; Russell D A; Sapsford K E; Vidal M
Optical biosensing of nitrite ions using cytochrome cd1 nitrite reductase encapsulated in a sol-gel matrix.
The Analyst 2000;125(11):1993-9.
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2000: Walhout A J; Boulton S J; Vidal M
Yeast two-hybrid systems and protein interaction mapping projects for yeast and worm.
Yeast (Chichester, England) 2000;17(2):88-94.
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2000: Zukerberg L R; Patrick G N; Nikolic M; Humbert S; Wu C L; Lanier L M; Gertler F B; Vidal M; Van Etten R A; Tsai L H
Cables links Cdk5 and c-Abl and facilitates Cdk5 tyrosine phosphorylation, kinase upregulation, and neurite outgrowth.
Neuron 2000;26(3):633-46.
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2000: Walhout A J; Sordella R; Lu X; Hartley J L; Temple G F; Brasch M A; Thierry-Mieg N; Vidal M
Protein interaction mapping in C. elegans using proteins involved in vulval development.
Science (New York, N.Y.) 2000;287(5450):116-22.
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2000: Walhout A J; Temple G F; Brasch M A; Hartley J L; Lorson M A; van den Heuvel S; Vidal M
GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes.
Methods in enzymology 2000;328():575-92.
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1999: Walhout A J; Vidal M
A genetic strategy to eliminate self-activator baits prior to high-throughput yeast two-hybrid screens.
Genome research 1999;9(11):1128-34.
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1999: Cenciarelli C; Chiaur D S; Guardavaccaro D; Parks W; Vidal M; Pagano M
Identification of a family of human F-box proteins.
Current biology : CB 1999;9(20):1177-9.
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1998: Walhout M; Endoh H; Thierry-Mieg N; Wong W; Vidal M
A model of elegance.
American journal of human genetics 1998;63(4):955-61.
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1998: Schilling B; De-Medina T; Syken J; Vidal M; Münger K
A novel human DnaJ protein, hTid-1, a homolog of the Drosophila tumor suppressor protein Tid56, can interact with the human papillomavirus type 16 E7 oncoprotein.
Virology 1998;247(1):74-85.
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1998: Ronco L V; Karpova A Y; Vidal M; Howley P M
Human papillomavirus 16 E6 oncoprotein binds to interferon regulatory factor-3 and inhibits its transcriptional activity.
Genes & development 1998;12(13):2061-72.
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1997: Hu G; Zhang S; Vidal M; Baer J L; Xu T; Fearon E R
Mammalian homologs of seven in absentia regulate DCC via the ubiquitin-proteasome pathway.
Genes & development 1997;11(20):2701-14.
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1997: Yasugi T; Vidal M; Sakai H; Howley P M; Benson J D
Two classes of human papillomavirus type 16 E1 mutants suggest pleiotropic conformational constraints affecting E1 multimerization, E2 interaction, and interaction with cellular proteins.
Journal of virology 1997;71(8):5942-51.
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1997: Yasugi T; Benson J D; Sakai H; Vidal M; Howley P M
Mapping and characterization of the interaction domains of human papillomavirus type 16 E1 and E2 proteins.
Journal of virology 1997;71(2):891-9.
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1996: Kim S S; Chen Y M; O'Leary E; Witzgall R; Vidal M; Bonventre J V
A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(26):15299-304.
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1996: Vidal M; Braun P; Chen E; Boeke J D; Harlow E
Genetic characterization of a mammalian protein-protein interaction domain by using a yeast reverse two-hybrid system.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(19):10321-6.
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1996: Vidal M; Brachmann R K; Fattaey A; Harlow E; Boeke J D
Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(19):10315-20.
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1996: Du W; Vidal M; Xie J E; Dyson N
RBF, a novel RB-related gene that regulates E2F activity and interacts with cyclin E in Drosophila.
Genes & development 1996;10(10):1206-18.
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1995: Englert C; Vidal M; Maheswaran S; Ge Y; Ezzell R M; Isselbacher K J; Haber D A
Truncated WT1 mutants alter the subnuclear localization of the wild-type protein.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(26):11960-4.
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1995: Ishioka C; Ballester R; Engelstein M; Vidal M; Kassel J; The I; Bernards A; Gusella J F; Friend S H
A functional assay for heterozygous mutations in the GTPase activating protein related domain of the neurofibromatosis type 1 gene.
Oncogene 1995;10(5):841-7.
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1995: Vidal M; Buckley A M; Yohn C; Hoeppner D J; Gaber R F
Identification of essential nucleotides in an upstream repressing sequence of Saccharomyces cerevisiae by selection for increased expression of TRK2.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(6):2370-4.
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1994: Vidal M; Gaber R F
Selectable marker replacement in Saccharomyces cerevisiae.
Yeast (Chichester, England) 1994;10(2):141-9.
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1993: Lees J A; Saito M; Vidal M; Valentine M; Look T; Harlow E; Dyson N; Helin K
The retinoblastoma protein binds to a family of E2F transcription factors.
Molecular and cellular biology 1993;13(12):7813-25.
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1993: Ishioka C; Frebourg T; Yan Y X; Vidal M; Friend S H; Schmidt S; Iggo R
Screening patients for heterozygous p53 mutations using a functional assay in yeast.
Nature genetics 1993;5(2):124-9.
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1992: Helin K; Lees J A; Vidal M; Dyson N; Harlow E; Fattaey A
A cDNA encoding a pRB-binding protein with properties of the transcription factor E2F.
Cell 1992;70(2):337-50.
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1991: Vidal M; Gaber R F
RPD3 encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae.
Molecular and cellular biology 1991;11(12):6317-27.
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1991: Vidal M; Strich R; Esposito R E; Gaber R F
RPD1 (SIN3/UME4) is required for maximal activation and repression of diverse yeast genes.
Molecular and cellular biology 1991;11(12):6306-16.
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1990: Vidal M; Buckley A M; Hilger F; Gaber R F
Direct selection for mutants with increased K+ transport in Saccharomyces cerevisiae.
Genetics 1990;125(2):313-20.
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1989: Gaber R F; Copple D M; Kennedy B K; Vidal M; Bard M
The yeast gene ERG6 is required for normal membrane function but is not essential for biosynthesis of the cell-cycle-sparking sterol.
Molecular and cellular biology 1989;9(8):3447-56.
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