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Martin Vingron

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Concepts & Ideas

Occupations

Computational Biology

Devices

Oligonucleotide Array Sequence Analysis

Procedures

Chemicals & Drugs

Living Beings

Mice

Activities & Behaviors

Phenomena

Molecular Evolution

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Publications

TOP 3
Hufton Andrew L; Mathia Susanne; Braun Helene; Georgi Udo; Lehrach Hans; Vingron Martin; Poustka Albert J; Panopoulou Georgia
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.
Roider Helge G; Lenhard Boris; Kanhere Aditi; Haas Stefan A; Vingron Martin
CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses.
Vingron Martin
Special RECOMB 2008 Issue. Preface.

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All Publications

2009: Hufton Andrew L; Mathia Susanne; Braun Helene; Georgi Udo; Lehrach Hans; Vingron Martin; Poustka Albert J; Panopoulou Georgia
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.
Genome research 2009;19(11):2036-51.
2009: Roider Helge G; Lenhard Boris; Kanhere Aditi; Haas Stefan A; Vingron Martin
CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses.
Nucleic acids research 2009;37(19):6305-15.
2009: Vingron Martin
Special RECOMB 2008 Issue. Preface.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(8):969.
2009: Pape Utz J; Klein Holger; Vingron Martin
Statistical detection of cooperative transcription factors with similarity adjustment.
Bioinformatics (Oxford, England) 2009;25(16):2103-9.
2009: Huang Xiaoqiu; Vingron Martin
Maximum similarity: a new formulation of phylogenetic reconstruction.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(7):887-96.
2009: Stritt Christine; Stern Sina; Harting Kai; Manke Thomas; Sinske Daniela; Schwarz Heinz; Vingron Martin; Nordheim Alfred; Knöll Bernd
Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression.
Nature neuroscience 2009;12(4):418-27.
2009: Chung Ho-Ryun; Vingron Martin
Sequence-dependent nucleosome positioning.
Journal of molecular biology 2009;386(5):1411-22.
2009: Gat-Viks Irit; Vingron Martin
Evidence for gene-specific rather than transcription rate-dependent histone H3 exchange in yeast coding regions.
PLoS computational biology 2009;5(2):e1000282.
2009: Blüthgen Nils; Legewie Stefan; Kielbasa Szymon M; Schramme Anja; Tchernitsa Oleg; Keil Jana; Solf Andrea; Vingron Martin; Schäfer Reinhold; Herzel Hanspeter; Sers Christine
A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts.
The FEBS journal 2009;276(4):1024-35.
2009: Zemojtel Tomasz; Kielbasa Szymon M; Arndt Peter F; Chung Ho-Ryun; Vingron Martin
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale.
Trends in genetics : TIG 2009;25(2):63-6.
2009: Roider Helge G; Manke Thomas; O'Keeffe Sean; Vingron Martin; Haas Stefan A
PASTAA: identifying transcription factors associated with sets of co-regulated genes.
Bioinformatics (Oxford, England) 2009;25(4):435-42.
2009: Chavez Lukas; Bais Abha S; Vingron Martin; Lehrach Hans; Adjaye James; Herwig Ralf
In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach.
BMC genomics 2009;10():314.
2009: Szczurek Ewa; Gat-Viks Irit; Tiuryn Jerzy; Vingron Martin
Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments.
Molecular systems biology 2009;5():287.
2009: Chung Ho-Ryun; Vingron Martin
Comparison of sequence-dependent tiling array normalization approaches.
BMC bioinformatics 2009;10():204.
2009: Steinhoff Christine; Paulsen Martina; Kielbasa Szymon; Walter Jörn; Vingron Martin
Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse.
BMC genomics 2009;10():144.
2009: Vingron Martin; Brazma Alvis; Coulson Richard; van Helden Jacques; Manke Thomas; Palin Kimmo; Sand Olivier; Ukkonen Esko
Integrating sequence, evolution and functional genomics in regulatory genomics.
Genome biology 2009;10(1):202.
2009: Kanhere Aditi; Vingron Martin
Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes.
BMC evolutionary biology 2009;9():9.
2008: Hufton Andrew L; Groth Detlef; Vingron Martin; Lehrach Hans; Poustka Albert J; Panopoulou Georgia
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement.
Genome research 2008;18(10):1582-91.
2008: Sultan Marc; Schulz Marcel H; Richard Hugues; Magen Alon; Klingenhoff Andreas; Scherf Matthias; Seifert Martin; Borodina Tatjana; Soldatov Aleksey; Parkhomchuk Dmitri; Schmidt Dominic; O'Keeffe Sean; Haas Stefan; Vingron Martin; Lehrach Hans; Yaspo Marie-Laure
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
Science (New York, N.Y.) 2008;321(5891):956-60.
2008: Pape Utz J; Rahmann Sven; Sun Fengzhu; Vingron Martin
Compound poisson approximation of the number of occurrences of a position frequency matrix (PFM) on both strands.
Journal of computational biology : a journal of computational molecular cell biology 2008;15(6):547-64.
2008: Bauer Sebastian; Grossmann Steffen; Vingron Martin; Robinson Peter N
Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration.
Bioinformatics (Oxford, England) 2008;24(14):1650-1.
2008: Chen Wei; Kalscheuer Vera; Tzschach Andreas; Menzel Corinna; Ullmann Reinhard; Schulz Marcel Holger; Erdogan Fikret; Li Na; Kijas Zofia; Arkesteijn Ger; Pajares Isidora Lopez; Goetz-Sothmann Margret; Heinrich Uwe; Rost Imma; Dufke Andreas; Grasshoff Ute; Glaeser Birgitta; Vingron Martin; Ropers H Hilger
Mapping translocation breakpoints by next-generation sequencing.
Genome research 2008;18(7):1143-9.
2008: Kaluza Pablo; Vingron Martin; Mikhailov Alexander S
Self-correcting networks: function, robustness, and motif distributions in biological signal processing.
Chaos (Woodbury, N.Y.) 2008;18(2):026113.
2008: Toenjes Martje; Schueler Markus; Hammer Stefanie; Pape Utz J; Fischer Jenny J; Berger Felix; Vingron Martin; Sperling Silke
Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes.
Molecular bioSystems 2008;4(6):589-98.
2008: Monti Jan; Fischer Judith; Paskas Svetlana; Heinig Matthias; Schulz Herbert; Gösele Claudia; Heuser Arnd; Fischer Robert; Schmidt Cosima; Schirdewan Alexander; Gross Volkmar; Hummel Oliver; Maatz Henrike; Patone Giannino; Saar Kathrin; Vingron Martin; Weldon Steven M; Lindpaintner Klaus; Hammock Bruce D; Rohde Klaus; Dietz Rainer; Cook Stuart A; Schunck Wolf-Hagen; Luft Friedrich C; Hubner Norbert
Soluble epoxide hydrolase is a susceptibility factor for heart failure in a rat model of human disease.
Nature genetics 2008;40(5):529-37.
2008: Giegerich Robert; Brazma Alvis; Jonassen Inge; Ukkonen Esko; Vingron Martin
The BREW workshop series: a stimulating experience in PhD education.
Briefings in bioinformatics 2008;9(3):250-3.
2008: Manke Thomas; Roider Helge G; Vingron Martin
Statistical modeling of transcription factor binding affinities predicts regulatory interactions.
PLoS computational biology 2008;4(3):e1000039.
2008: Pape Utz J; Rahmann Sven; Vingron Martin
Natural similarity measures between position frequency matrices with an application to clustering.
Bioinformatics (Oxford, England) 2008;24(3):350-7.
2008: Zhang Jing; Vingron Martin; Roepcke Stefan
Characteristic differences between the promoters of intron-containing and intronless ribosomal protein genes in yeast.
BMC research notes 2008;1():109.
2008: Kielbasa Szymon M; Vingron Martin
Transcriptional autoregulatory loops are highly conserved in vertebrate evolution.
PloS one 2008;3(9):e3210.
2008: Winter Jennifer; Roepcke Stefan; Krause Sven; Müller Eva-Christina; Otto Albrecht; Vingron Martin; Schweiger Susann
Comparative 3'UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines.
PloS one 2008;3(7):e2780.
2008: Lee Ho-Joon; Manke Thomas; Bringas Ricardo; Vingron Martin
Prioritization of gene regulatory interactions from large-scale modules in yeast.
BMC bioinformatics 2008;9():32.
2007: Grossmann Steffen; Bauer Sebastian; Robinson Peter N; Vingron Martin
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis.
Bioinformatics (Oxford, England) 2007;23(22):3024-31.
2007: Bais Abha S; Grossmann Stefen; Vingron Martin
Incorporating evolution of transcription factor binding sites into annotated alignments.
Journal of biosciences 2007;32(5):841-50.
2007: Chung Ho-Ryun; Kostka Dennis; Vingron Martin
A physical model for tiling array analysis.
Bioinformatics (Oxford, England) 2007;23(13):i80-6.
2007: Messer Philipp W; Bundschuh Ralf; Vingron Martin; Arndt Peter F
Effects of long-range correlations in DNA on sequence alignment score statistics.
Journal of computational biology : a journal of computational molecular cell biology 2007;14(5):655-68.
2007: Kaluza Pablo; Ipsen Mads; Vingron Martin; Mikhailov Alexander S
Design and statistical properties of robust functional networks: a model study of biological signal transduction.
Physical review. E, Statistical, nonlinear, and soft matter physics 2007;75(1 Pt 2):015101.
2007: Bais Abha Singh; Grossmann Steffen; Vingron Martin
Simultaneous alignment and annotation of cis-regulatory regions.
Bioinformatics (Oxford, England) 2007;23(2):e44-9.
2007: Dieterich C; Franz M W; Vingron M
Developments in CORG: a gene-centric comparative genomics resource.
Nucleic acids research 2007;35(Database issue):D32-5.
2007: Roider Helge G; Kanhere Aditi; Manke Thomas; Vingron Martin
Predicting transcription factor affinities to DNA from a biophysical model.
Bioinformatics (Oxford, England) 2007;23(2):134-41.
2007: Klein Holger; Vingron Martin
Using transcription factor binding site co-occurrence to predict regulatory regions.
Genome informatics. International Conference on Genome Informatics 2007;18():109-18.
2007: Zemojtel Tomasz; Penzkofer Tobias; Schultz Jörg; Dandekar Thomas; Badge Richard; Vingron Martin
Exonization of active mouse L1s: a driver of transcriptome evolution?
BMC genomics 2007;8():392.
2006: Manke Thomas; Demetrius Lloyd; Vingron Martin
An entropic characterization of protein interaction networks and cellular robustness.
Journal of the Royal Society, Interface / the Royal Society 2006;3(11):843-50.
2006: Zemojtel Tomasz; Fröhlich Andreas; Palmieri M Cristina; Kolanczyk Mateusz; Mikula Ivan; Wyrwicz Lucjan S; Wanker Erich E; Mundlos Stefan; Vingron Martin; Martasek Pavel; Durner Jörg
Plant nitric oxide synthase: a never-ending story?
Trends in plant science 2006;11(11):524-5; author reply 526-8.
2006: Dohm Juliane C; Vingron Martin; Staub Eike
Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes.
Journal of molecular evolution 2006;63(4):437-47.
2006: Steinhoff Christine; Vingron Martin
Normalization and quantification of differential expression in gene expression microarrays.
Briefings in bioinformatics 2006;7(2):166-77.
2006: Luz Hannes; Vingron Martin
Family specific rates of protein evolution.
Bioinformatics (Oxford, England) 2006;22(10):1166-71.
2006: Zemojtel Tomasz; Kolanczyk Mateusz; Kossler Nadine; Stricker Sigmar; Lurz Rudi; Mikula Ivan; Duchniewicz Marlena; Schuelke Markus; Ghafourifar Pedram; Martasek Pavel; Vingron Martin; Mundlos Stefan
Mammalian mitochondrial nitric oxide synthase: characterization of a novel candidate.
FEBS letters 2006;580(2):455-62.
2006: Roepcke Stefan; Zhi Degui; Vingron Martin; Arndt Peter F
Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters.
Gene 2006;365():48-56.
2006: Luz Hannes; Staub Eike; Vingron Martin
About the interrelation of evolutionary rate and protein age.
Genome informatics. International Conference on Genome Informatics 2006;17(1):240-50.
2006: Pape Utz J; Grossmann Steffen; Hammer Stefanie; Sperling Silke; Vingron Martin
A new statistical model to select target sequences bound by transcription factors.
Genome informatics. International Conference on Genome Informatics 2006;17(1):134-40.
2006: Staub Eike; Mackowiak Sebastian; Vingron Martin
An inventory of yeast proteins associated with nucleolar and ribosomal components.
Genome biology 2006;7(10):R98.
2006: Dieterich Christoph; Vingron Martin
Comparative promoter analysis in vertebrate genomes with the CORG workbench.
Methods in molecular biology (Clifton, N.J.) 2006;338():105-18.
2006: Yeang Chen-Hsiang; Vingron Martin
A joint model of regulatory and metabolic networks.
BMC bioinformatics 2006;7():332.
2005: Irlbacher Horst; Franke Jacqueline; Manke Thomas; Vingron Martin; Ehrenhofer-Murray Ann E
Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression.
Genes & development 2005;19(15):1811-22.
2005: Roepcke S; Fiziev P; Seeburg P H; Vingron M
SVC: structured visualization of evolutionary sequence conservation.
Nucleic acids research 2005;33(Web Server issue):W271-3.
2005: Gupta Shobhit; Vingron Martin; Haas Stefan A
T-STAG: resource and web-interface for tissue-specific transcripts and genes.
Nucleic acids research 2005;33(Web Server issue):W654-8.
2005: Roepcke Stefan; Grossmann Steffen; Rahmann Sven; Vingron Martin
T-Reg Comparator: an analysis tool for the comparison of position weight matrices.
Nucleic acids research 2005;33(Web Server issue):W438-41.
2005: Schmid Markus; Davison Timothy S; Henz Stefan R; Pape Utz J; Demar Monika; Vingron Martin; Schölkopf Bernhard; Weigel Detlef; Lohmann Jan U
A gene expression map of Arabidopsis thaliana development.
Nature genetics 2005;37(5):501-6.
2005: Michael Morris; Dieterich Christoph; Vingron Martin
SITEBLAST--rapid and sensitive local alignment of genomic sequences employing motif anchors.
Bioinformatics (Oxford, England) 2005;21(9):2093-4.
2005: Sültmann Holger; von Heydebreck Anja; Huber Wolfgang; Kuner Ruprecht; Buness Andreas; Vogt Markus; Gunawan Bastian; Vingron Martin; Füzesí Laszlo; Poustka Annemarie
Gene expression in kidney cancer is associated with cytogenetic abnormalities, metastasis formation, and patient survival.
Clinical cancer research : an official journal of the American Association for Cancer Research 2005;11(2 Pt 1):646-55.
2005: Meinel Thomas; Krause Antje; Luz Hannes; Vingron Martin; Staub Eike
The SYSTERS Protein Family Database in 2005.
Nucleic acids research 2005;33(Database issue):D226-9.
2005: Manke Thomas; Demetrius Lloyd; Vingron Martin
Lethality and entropy of protein interaction networks.
Genome informatics. International Conference on Genome Informatics 2005;16(1):159-63.
2005: Dyczkowski Jerzy; Vingron Martin
Comparative analysis of cell cycle regulated genes in eukaryotes.
Genome informatics. International Conference on Genome Informatics 2005;16(1):125-31.
2005: Zhang Jian; Vingron Martin; Hoehe Margret R
Haplotype reconstruction for diploid populations.
Human heredity 2005;59(3):144-56.
2005: Dieterich Christoph; Grossmann Steffen; Tanzer Andrea; Röpcke Stefan; Arndt Peter F; Stadler Peter F; Vingron Martin
Comparative promoter region analysis powered by CORG.
BMC genomics 2005;6(1):24.
2005: Krause Antje; Stoye Jens; Vingron Martin
Large scale hierarchical clustering of protein sequences.
BMC bioinformatics 2005;6():15.
2004: Philippar Ulrike; Schratt Gerhard; Dieterich Christoph; Müller Judith M; Galgóczy Petra; Engel Felix B; Keating Mark T; Gertler Frank; Schüle Roland; Vingron Martin; Nordheim Alfred
The SRF target gene Fhl2 antagonizes RhoA/MAL-dependent activation of SRF.
Molecular cell 2004;16(6):867-80.
2004: Gupta S; Zink D; Korn B; Vingron M; Haas S A
Genome wide identification and classification of alternative splicing based on EST data.
Bioinformatics (Oxford, England) 2004;20(16):2579-85.
2004: Gupta Shobhit; Zink Dorothea; Korn Bernhard; Vingron Martin; Haas Stefan A
Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing.
BMC genomics 2004;5(1):72.
2004: Klau Gunnar W; Rahmann Sven; Schliep Alexander; Vingron Martin; Reinert Knut
Optimal robust non-unique probe selection using Integer Linear Programming.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i186-93.
2004: Dieterich Christoph; Rahmann Sven; Vingron Martin
Functional inference from non-random distributions of conserved predicted transcription factor binding sites.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i109-15.
2004: Xue Yongtao; Haas Stefan A; Brino Laurent; Gusnanto Arief; Reimers Mark; Talibi Driss; Vingron Martin; Ekwall Karl; Wright Anthony P H
A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift.
Yeast (Chichester, England) 2004;21(1):25-39.
2004: Hermjakob Henning; Montecchi-Palazzi Luisa; Lewington Chris; Mudali Sugath; Kerrien Samuel; Orchard Sandra; Vingron Martin; Roechert Bernd; Roepstorff Peter; Valencia Alfonso; Margalit Hanah; Armstrong John; Bairoch Amos; Cesareni Gianni; Sherman David; Apweiler Rolf
IntAct: an open source molecular interaction database.
Nucleic acids research 2004;32(Database issue):D452-5.
2004: Rateitschak Katja; Müller Tobias; Vingron Martin
Annotating significant pairs of transcription factor binding sites in regulatory DNA.
In silico biology 2004;4(4):479-87.
2003: Beissbarth Tim; Borisevich Igor; Hörlein Andreas; Kenzelmann Marc; Hergenhahn Manfred; Klewe-Nebenius Annette; Klären Ralf; Korn Bernhard; Schmid Wolfgang; Vingron Martin; Schütz Günther
Analysis of CREM-dependent gene expression during mouse spermatogenesis.
Molecular and cellular endocrinology 2003;212(1-2):29-39.
2003: Dieterich C; Herwig R; Vingron M
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.
Bioinformatics (Oxford, England) 2003;19 Suppl 2():ii50-6.
2003: Manke Thomas; Bringas Ricardo; Vingron Martin
Correlating protein-DNA and protein-protein interaction networks.
Journal of molecular biology 2003;333(1):75-85.
2003: Haas Stefan A; Hild Marc; Wright Anthony P H; Hain Torsten; Talibi Driss; Vingron Martin
Genome-scale design of PCR primers and long oligomers for DNA microarrays.
Nucleic acids research 2003;31(19):5576-81.
2003: Panopoulou Georgia; Hennig Steffen; Groth Detlef; Krause Antje; Poustka Albert J; Herwig Ralf; Vingron Martin; Lehrach Hans
New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes.
Genome research 2003;13(6A):1056-66.
2003: Kaynak Bogac; von Heydebreck Anja; Mebus Siegrun; Seelow Dominik; Hennig Steffen; Vogel Jan; Sperling Hans-Peter; Pregla Reinhard; Alexi-Meskishvili Vladimir; Hetzer Roland; Lange Peter E; Vingron Martin; Lehrach Hans; Sperling Silke
Genome-wide array analysis of normal and malformed human hearts.
Circulation 2003;107(19):2467-74.
2003: Kriventseva Evgenia V; Koch Ina; Apweiler Rolf; Vingron Martin; Bork Peer; Gelfand Mikhail S; Sunyaev Shamil
Increase of functional diversity by alternative splicing.
Trends in genetics : TIG 2003;19(3):124-8.
2003: Wieczorek Georg; Steinhoff Christine; Schulz Ralph; Scheller Marina; Vingron Martin; Ropers H-Hilger; Nuber Ulrike A
Gene expression profile of mouse bone marrow stromal cells determined by cDNA microarray analysis.
Cell and tissue research 2003;311(2):227-37.
2003: Dieterich C; Wang H; Rateitschak K; Luz H; Vingron M
CORG: a database for COmparative Regulatory Genomics.
Nucleic acids research 2003;31(1):55-7.
2003: Rahmann Sven; Müller Tobias; Vingron Martin
On the power of profiles for transcription factor binding site detection.
Statistical applications in genetics and molecular biology 2003;2():Article7.
2003: Huber Wolfgang; von Heydebreck Anja; Sueltmann Holger; Poustka Annemarie; Vingron Martin
Parameter estimation for the calibration and variance stabilization of microarray data.
Statistical applications in genetics and molecular biology 2003;2():Article3.
2003: Hild M; Beckmann B; Haas S A; Koch B; Solovyev V; Busold C; Fellenberg K; Boutros M; Vingron M; Sauer F; Hoheisel J D; Paro R
An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome.
Genome biology 2003;5(1):R3.
2002: Schmidt Heiko A; Strimmer Korbinian; Vingron Martin; von Haeseler Arndt
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
Bioinformatics (Oxford, England) 2002;18(3):502-4.
2002: Fellenberg Kurt; Hauser Nicole C; Brors Benedikt; Hoheisel Jörg D; Vingron Martin
Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis.
Bioinformatics (Oxford, England) 2002;18(3):423-33.
2002: Scheideler Marcel; Schlaich Nikolaus L; Fellenberg Kurt; Beissbarth Tim; Hauser Nicole C; Vingron Martin; Slusarenko Alan J; Hoheisel Jorg D
Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays.
The Journal of biological chemistry 2002;277(12):10555-61.
2002: Krause Antje; Haas Stefan A; Coward Eivind; Vingron Martin
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.
Nucleic acids research 2002;30(1):299-300.
2002: Müller Tobias; Spang Rainer; Vingron Martin
Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method.
Molecular biology and evolution 2002;19(1):8-13.
2002: Huber W; Boer J M; von Heydebreck A; Gunawan B; Vingron M; Füzesi L; Poustka A; Sültmann H
Transcription profiling of renal cell carcinoma.
Verhandlungen der Deutschen Gesellschaft für Pathologie 2002;86():153-64.
2002: Schomburg Dietmar; Vingron Martin
Bioinformatics research and education in Germany.
In silico biology 2002;2(3):169-71.
2002: Dieterich Christoph; Cusack Brian; Wang Haiyan; Rateitschak Katja; Krause Antje; Vingron Martin
Annotating regulatory DNA based on man-mouse genomic comparison.
Bioinformatics (Oxford, England) 2002;18 Suppl 2():S84-90.
2002: Boué Stéphanie; Vingron Martin; Kriventseva Evgenia; Koch Ina
Theoretical analysis of alternative splice forms using computational methods.
Bioinformatics (Oxford, England) 2002;18 Suppl 2():S65-73.
2002: Brazma Alvis; Sarkans Ugis; Robinson Alan; Vilo Jaak; Vingron Martin; Hoheisel Jörg; Fellenberg Kurt
Microarray data representation, annotation and storage.
Advances in biochemical engineering/biotechnology 2002;77():113-39.
2002: Huber Wolfgang; von Heydebreck Anja; Sültmann Holger; Poustka Annemarie; Vingron Martin
Variance stabilization applied to microarray data calibration and to the quantification of differential expression.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S96-104.
2001: Rehmsmeier M; Vingron M
Phylogenetic information improves homology detection.
Proteins 2001;45(4):360-71.
2001: Brazma A; Hingamp P; Quackenbush J; Sherlock G; Spellman P; Stoeckert C; Aach J; Ansorge W; Ball C A; Causton H C; Gaasterland T; Glenisson P; Holstege F C; Kim I F; Markowitz V; Matese J C; Parkinson H; Robinson A; Sarkans U; Schulze-Kremer S; Stewart J; Taylor R; Vilo J; Vingron M
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Nature genetics 2001;29(4):365-71.
2001: Boer J M; Huber W K; Sültmann H; Wilmer F; von Heydebreck A; Haas S; Korn B; Gunawan B; Vente A; Füzesi L; Vingron M; Poustka A
Identification and classification of differentially expressed genes in renal cell carcinoma by expression profiling on a global human 31,500-element cDNA array.
Genome research 2001;11(11):1861-70.
2001: Fellenberg K; Hauser N C; Brors B; Neutzner A; Hoheisel J D; Vingron M
Correspondence analysis applied to microarray data.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(19):10781-6.
2001: Spang R; Vingron M
Limits of homology detection by pairwise sequence comparison.
Bioinformatics (Oxford, England) 2001;17(4):338-42.
2001: von Heydebreck A; Huber W; Poustka A; Vingron M
Identifying splits with clear separation: a new class discovery method for gene expression data.
Bioinformatics (Oxford, England) 2001;17 Suppl 1():S107-14.
2000: Haas S A; Beissbarth T; Rivals E; Krause A; Vingron M
GeneNest: automated generation and visualization of gene indices.
Trends in genetics : TIG 2000;16(11):521-3.
2000: Beissbarth T; Fellenberg K; Brors B; Arribas-Prat R; Boer J; Hauser N C; Scheideler M; Hoheisel J D; Schütz G; Poustka A; Vingron M
Processing and quality control of DNA array hybridization data.
Bioinformatics (Oxford, England) 2000;16(11):1014-22.
2000: Heber S; Hoheisel J; Vingron M
Application of bootstrap techniques to physical mapping.
Genomics 2000;69(2):235-41.
2000: Krause A; Stoye J; Vingron M
The SYSTERS protein sequence cluster set.
Nucleic acids research 2000;28(1):270-2.
2000: Pollet N; Schmidt H A; Gawantka V; Vingron M; Niehrs C
Axeldb: a Xenopus laevis database focusing on gene expression.
Nucleic acids research 2000;28(1):139-40.
2000: Müller T; Vingron M
Modeling amino acid replacement.
Journal of computational biology : a journal of computational molecular cell biology 2000;7(6):761-76.
2000: Heber S; Stoye J; Frohme M; Hoheisel J; Vingron M
Contig selection in physical mapping.
Journal of computational biology : a journal of computational molecular cell biology 2000;7(3-4):395-408.
2000: Pollet N; Schmidt H A; Gawantka V; Niehrs C; Vingron M
In silico analysis of gene expression patterns during early development of Xenopus laevis.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():443-54.
1999: Krause A; Nicodème P; Bornberg-Bauer E; Rehmsmeier M; Vingron M
WWW access to the SYSTERS protein sequence cluster set.
Bioinformatics (Oxford, England) 1999;15(3):262-3.
1999: Vingron M; Hoheisel J
Computational aspects of expression data.
Journal of molecular medicine (Berlin, Germany) 1999;77(1):3-7.
1998: Gawantka V; Pollet N; Delius H; Vingron M; Pfister R; Nitsch R; Blumenstock C; Niehrs C
Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning.
Mechanisms of development 1998;77(2):95-141.
1998: Hauser N C; Vingron M; Scheideler M; Krems B; Hellmuth K; Entian K D; Hoheisel J D
Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae.
Yeast (Chichester, England) 1998;14(13):1209-21.
1998: Krause A; Vingron M
A set-theoretic approach to database searching and clustering.
Bioinformatics (Oxford, England) 1998;14(5):430-8.
1998: Haas S; Vingron M; Poustka A; Wiemann S
Primer design for large scale sequencing.
Nucleic acids research 1998;26(12):3006-12.
1998: Bornberg-Bauer E; Rivals E; Vingron M
Computational approaches to identify leucine zippers.
Nucleic acids research 1998;26(11):2740-6.
1998: Spang R; Vingron M
Statistics of large-scale sequence searching.
Bioinformatics (Oxford, England) 1998;14(3):279-84.
1997: Dear N; Matena K; Vingron M; Boehm T
A new subfamily of vertebrate calpains lacking a calmodulin-like domain: implications for calpain regulation and evolution.
Genomics 1997;45(1):175-84.
1997: Vingron M; von Haeseler A
Towards integration of multiple alignment and phylogenetic tree construction.
Journal of computational biology : a journal of computational molecular cell biology 1997;4(1):23-34.
1996: Vingron M
Near-optimal sequence alignment.
Current opinion in structural biology 1996;6(3):346-52.

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