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Olga Vitek

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TOP 3
Danni Yu; Wolfgang Huber; Olga Vitek
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size.
Ching-Yun Chang; Viola Heinzelmann-Schwarz; Ruth Hüttenhain; Marko Jovanovic; Paola Picotti; Ruedi Aebersold; Olga Vitek
Protein significance analysis in selected reaction monitoring (SRM) measurements.
Tao Ye; Shucha Zhang; Cheng Zheng; G A Nagana Gowda; Olga Vitek; Daniel Raftery
"Add to subtract": a simple method to remove complex background signals from the 1H nuclear magnetic resonance spectra of mixtures.

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All Publications

2013: Danni Yu; Wolfgang Huber; Olga Vitek
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size.
Bioinformatics (Oxford, England) 2013;29(10):1275-82.
2012: Ching-Yun Chang; Viola Heinzelmann-Schwarz; Ruth Hüttenhain; Marko Jovanovic; Paola Picotti; Ruedi Aebersold; Olga Vitek
Protein significance analysis in selected reaction monitoring (SRM) measurements.
Molecular & cellular proteomics : MCP 2012;11(4):M111.014662.
2012: Tao Ye; Shucha Zhang; Cheng Zheng; G A Nagana Gowda; Olga Vitek; Daniel Raftery
"Add to subtract": a simple method to remove complex background signals from the 1H nuclear magnetic resonance spectra of mixtures.
Analytical chemistry 2012;84(2):994-1002.
2012: Timothy Clough; Susanne Ragg; Safia Thaminy; Ruedi Aebersold; Olga Vitek
Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs.
BMC bioinformatics 2012;13 Suppl 16():S6.
2012: Danni Yu; Olena K Vatamaniuk; Olga Vitek; Ivan Baxter; John M C Danku; Sungjin Kim; Mourad Ouzzani; David Salt
High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome.
BMC genomics 2012;13():623.
2012: Joëlle K Muhlemann; Basil J Nikolau; M Ann Perera; Phillip San Miguel; Olga Vitek; Ivan Baxter; Ching-Yun Chang; Bruce Cooper; Hiroshi Maeda; John A Morgan; Natalia Dudareva
Developmental changes in the metabolic network of snapdragon flowers.
PloS one 2012;7(7):e40381.
2011: Danni Yu; Ivan Baxter; John Danku; Sungjin Kim; David Salt; Olena K Vatamaniuk; Olga Vitek
Noise reduction in genome-wide perturbation screens using linear mixed-effect models.
Bioinformatics (Oxford, England) 2011;27(16):2173-80.
2011: Cheng Zheng; Shucha Zhang; Susanne Ragg; Daniel Raftery; Olga Vitek
Identification and quantification of metabolites in (1)H NMR spectra by Bayesian model selection.
Bioinformatics (Oxford, England) 2011;27(12):1637-44.
2011: Allison L Dill; Livia S Eberlin; Anthony B Costa; Cheng Zheng; Demian R Ifa; Liang Cheng; Timothy A Masterson; Michael O Koch; Olga Vitek; R Graham Cooks
Multivariate statistical identification of human bladder carcinomas using ambient ionization imaging mass spectrometry.
Chemistry (Weinheim an der Bergstrasse, Germany) 2011;17(10):2897-902.
2011: Timothy Clough; Siegmund Braun; Vladimir Fokin; Ilka Ott; Susanne Ragg; Gunther Schadow; Olga Vitek
Statistical design and analysis of label-free LC-MS proteomic experiments: a case study of coronary artery disease.
Methods in molecular biology (Clifton, N.J.) 2011;728():293-319.
2010: Allison L Dill; Livia S Eberlin; Cheng Zheng; Anthony B Costa; Demian R Ifa; Liang Cheng; Timothy A Masterson; Michael O Koch; Olga Vitek; R Graham Cooks
Multivariate statistical differentiation of renal cell carcinomas based on lipidomic analysis by ambient ionization imaging mass spectrometry.
Analytical and bioanalytical chemistry 2010;398(7-8):2969-78.
2009: Timothy Clough; Melissa Key; Ilka Ott; Susanne Ragg; Gunther Schadow; Olga Vitek
Protein quantification in label-free LC-MS experiments.
Journal of proteome research 2009;8(11):5275-84.
2009: Carly A Sherwood; Ashley Eastham; Lik Wee Lee; Jenni Risler; Olga Vitek; Daniel B Martin
Correlation between y-type ions observed in ion trap and triple quadrupole mass spectrometers.
Journal of proteome research 2009;8(9):4243-51.
2008: Ivan Baxter; Olga Vitek; Brett Lahner; Balasubramanaim Muthukumar; Monica Borghi; Joe Morrissey; Mary Lou Guerinot; David Salt
The leaf ionome as a multivariable system to detect a plant's physiological status.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(33):12081-6.
2008: Mi-Youn Brusniak; Bernd Bodenmiller; David Campbell; Kelly Cooke; James Eddes; Andrew Garbutt; Hollis Lau; Simon Letarte; Lukas N Mueller; Vagisha Sharma; Olga Vitek; Ning Zhang; Ruedi Aebersold; Julian D Watts
Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
BMC bioinformatics 2008;9():542.
2006: Olga Vitek; Chris Bailey-Kellogg; Bruce Craig; Jan Vitek
Inferential backbone assignment for sparse data.
Journal of biomolecular NMR 2006;35(3):187-208.
2006: ZhengPing Yi; Olga Vitek; MA Qasim; Stephen M Lu; Wuyuan Lu; Michael Ranjbar; Jiangtian Li; Michael C Laskowski; Chris Bailey-Kellogg; Michael Laskowski
Functional evolution within a protein superfamily.
Proteins 2006;63(3):697-708.
2005: Olga Vitek; Chris Bailey-Kellogg; Bruce Craig; Paul Kuliniewicz; Jan Vitek
Reconsidering complete search algorithms for protein backbone NMR assignment.
Bioinformatics (Oxford, England) 2005;21 Suppl 2():ii230-6.
2004: Olga Vitek; Jan Vitek; Bruce Craig; Chris Bailey-Kellogg
Model-based assignment and inference of protein backbone Nuclear Magnetic Resonances.
Statistical applications in genetics and molecular biology 2004;3():Article6.