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Yue Wang

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Oligonucleotide Array Sequence Analysis

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Saccharomyces cerevisiae

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Publications

TOP 3
Li Chen; Rebecca B Riggins; Yue Wang; Jianhua Xuan; Robert Clarke
Identifying protein interaction subnetworks by a bagging Markov random field-based method.
Li Chen; Robert Clarke; Rebecca B Riggins; Jianhua Xuan; Yue Wang
Identifying cancer biomarkers by network-constrained support vector machines.
Li Chen; Jianhua Xuan; Rebecca Riggins; Yue Wang; Eric Hoffman; Robert Clarke
Multilevel support vector regression analysis to identify condition-specific regulatory networks.

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All Publications

2013: Li Chen; Rebecca B Riggins; Yue Wang; Jianhua Xuan; Robert Clarke
Identifying protein interaction subnetworks by a bagging Markov random field-based method.
Nucleic acids research 2013;41(2):e42.
2011: Li Chen; Robert Clarke; Rebecca B Riggins; Jianhua Xuan; Yue Wang
Identifying cancer biomarkers by network-constrained support vector machines.
BMC systems biology 2011;5():161.
2010: Li Chen; Jianhua Xuan; Rebecca Riggins; Yue Wang; Eric Hoffman; Robert Clarke
Multilevel support vector regression analysis to identify condition-specific regulatory networks.
Bioinformatics (Oxford, England) 2010;26(11):1416-22.
2010: Chen Wang; Jianhua Xuan; Huai Li; Yue Wang; Ming Zhan; Eric Hoffman; Robert Clarke
Knowledge-guided gene ranking by coordinative component analysis.
BMC bioinformatics 2010;11():162.
2010: Jianhua Xuan; Yue Wang; Eric Hoffman; Robert Clarke
Cross phenotype normalization of microarray data.
Frontiers in bioscience (Elite edition) 2010;2():171-86.
2009: Bai Zhang; Huai Li; Rebecca Riggins; Ming Zhan; Jianhua Xuan; Zhen Zhang; Eric Hoffman; Robert Clarke; Yue Wang
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
Bioinformatics (Oxford, England) 2009;25(4):526-32.
2009: Li Chen; Jianhua Xuan; Yue Wang; Eric Hoffman; Rebecca B Riggins; Robert Clarke
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis.
International journal of computational biology and drug design 2009;2(1):1-20.
2009: Li Chen; Jianhua Xuan; Chen Wang; Yue Wang; Ie-Ming Shih; Tian-Li Wang; Zhen Zhang; Robert Clarke; Eric Hoffman
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
International journal of data mining and bioinformatics 2009;3(4):365-81.
2008: Li Chen; Jianhua Xuan; Chen Wang; Ie-Ming Shih; Yue Wang; Zhen Zhang; Eric Hoffman; Robert Clarke
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC bioinformatics 2008;9():416.
2008: Yitan Zhu; Huai Li; David J Miller; Zuyi Wang; Jianhua Xuan; Robert Clarke; Eric Hoffman; Yue Wang
caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data.
BMC bioinformatics 2008;9():383.
2008: Yitan Zhu; Zuyi Wang; David J Miller; Robert Clarke; Jianhua Xuan; Eric Hoffman; Yue Wang
A ground truth based comparative study on clustering of gene expression data.
Frontiers in bioscience : a journal and virtual library 2008;13():3839-49.
2008: Chen Wang; Jianhua Xuan; Li Chen; Po Zhao; Yue Wang; Robert Clarke; Eric Hoffman
Motif-directed network component analysis for regulatory network inference.
BMC bioinformatics 2008;9 Suppl 1():S21.
2007: Jiajing Wang; Huai Li; Yitan Zhu; Malik Yousef; Michael Nebozhyn; Michael K Showe; Louise C Showe; Jianhua Xuan; Robert Clarke; Yue Wang
VISDA: an open-source caBIG analytical tool for data clustering and beyond.
Bioinformatics (Oxford, England) 2007;23(15):2024-7.
2007: Ting Gong; Jianhua Xuan; Chen Wang; Huai Li; Eric Hoffman; Robert Clarke; Yue Wang
Gene module identification from microarray data using nonnegative independent component analysis.
Gene regulation and systems biology 2007;1():349-63.
2007: Jianhua Xuan; Uwe Klimach; Hongzhi Zhao; Qiushui Chen; Yingyin Zou; Yue Wang
Improved diagnostics using polarization imaging and artificial neural networks.
International journal of biomedical imaging 2007;2007():74143.
2007: Jianhua Xuan; Yue Wang; Yibin Dong; Yuanjian Feng; Bin Wang; Javed Khan; Maria Bakay; Zuyi Wang; Lauren M Pachman; Sara Winokur; Yi-Wen Chen; Robert Clarke; Eric Hoffman
Gene selection for multiclass prediction by weighted Fisher criterion.
EURASIP journal on bioinformatics & systems biology 2007;():64628.
2006: Marina Bakay; Zuyi Wang; Gisela Melcon; Louis Schiltz; Jianhua Xuan; Po Zhao; Vittorio Sartorelli; Jinwook Seo; Elena Pegoraro; Corrado Angelini; Ben Shneiderman; Diana Escolar; Yi-Wen Chen; Sara T Winokur; Lauren M Pachman; Chenguang Fan; Raul Mandler; Yoram Nevo; Erynn Gordon; Yitan Zhu; Yibin Dong; Yue Wang; Eric Hoffman
Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration.
Brain : a journal of neurology 2006;129(Pt 4):996-1013.
2006: Zuyi Wang; Yue Wang; Jianhua Xuan; Yibin Dong; Marina Bakay; Yuanjian Feng; Robert Clarke; Eric Hoffman
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
Bioinformatics (Oxford, England) 2006;22(6):755-61.
2006: Yue Wang; Jianhua Xuan; Rujirutana Srikanchana; Peter L Choyke
Modeling and reconstruction of mixed functional and molecular patterns.
International journal of biomedical imaging 2006;2006():29707.
2003: Po Zhao; Jinwook Seo; Zuyi Wang; Yue Wang; Ben Shneiderman; Eric Hoffman
In vivo filtering of in vitro expression data reveals MyoD targets.
Comptes rendus biologies 2003;326(10-11):1049-65.