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David Ward

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Courtney S Schaffert; Christian G Klatt; Mark Pauley; David M Ward; Laurey Steinke
Identification and distribution of high-abundance proteins in the octopus spring microbial mat community.
Zhenfeng Liu; Marcus Ludwig; Douglas B Rusch; David M Ward; Sheila I Jensen; Christian G Klatt; Michael Kühl; Donald A Bryant
'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics.
Eric D Becraft; Frederick M Cohan; Sheila I Jensen; Michael Kühl; David M Ward
Fine-scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park.

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All Publications

2012: Courtney S Schaffert; Christian G Klatt; Mark Pauley; David M Ward; Laurey Steinke
Identification and distribution of high-abundance proteins in the octopus spring microbial mat community.
Applied and environmental microbiology 2012;78(23):8481-4.
2012: Zhenfeng Liu; Marcus Ludwig; Douglas B Rusch; David M Ward; Sheila I Jensen; Christian G Klatt; Michael Kühl; Donald A Bryant
'Candidatus Thermochlorobacter aerophilum:' an aerobic chlorophotoheterotrophic member of the phylum Chlorobi defined by metagenomics and metatranscriptomics.
The ISME journal 2012;6(10):1869-82.
2011: Eric D Becraft; Frederick M Cohan; Sheila I Jensen; Michael Kühl; David M Ward
Fine-scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park.
Applied and environmental microbiology 2011;77(21):7689-97.
2011: Zhenfeng Liu; Marcus Ludwig; Douglas B Rusch; Stephan C Schuster; Lynn P Tomsho; David M Ward; Nicola Wittekindt; Jason M Wood; Christian G Klatt; Donald A Bryant
Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.
The ISME journal 2011;5(8):1279-90.
2011: Christian G Klatt; Michael Kühl; Douglas B Rusch; Mary M Bateson; Devaki Bhaya; Donald A Bryant; Frederick M Cohan; Arthur R Grossman; Natsuko Hamamura; John F Heidelberg; Jason M Wood; David M Ward
Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.
The ISME journal 2011;5(8):1262-78.
2010: Marcel T J van der Meer; Christian G Klatt; Jason Wood; Donald A Bryant; Mary M Bateson; Laurens Lammerts; Stefan Schouten; Jaap S Sinninghe Damsté; Michael T Madigan; David M Ward
Cultivation and genomic, nutritional, and lipid biomarker characterization of Roseiflexus strains closely related to predominant in situ populations inhabiting Yellowstone hot spring microbial mats.
Journal of bacteriology 2010;192(12):3033-42.
2009: Reed Taffs; John Aston; Kristen Brileya; Zackary Jay; Christian G Klatt; Shawn McGlynn; Natasha Mallette; Scott Montross; Robin Gerlach; William P Inskeep; David M Ward; Ross P Carlson
In silico approaches to study mass and energy flows in microbial consortia: a syntrophic case study.
BMC systems biology 2009;3():114.
2008: Natsuko Hamamura; Manabu Fukui; David M Ward; William P Inskeep
Assessing soil microbial populations responding to crude-oil amendment at different temperatures using phylogenetic, functional gene (alkB) and physiological analyses.
Environmental science & technology 2008;42(20):7580-6.
2008: Anne-Soisig Steunou; Sheila I Jensen; Eric Brecht; Eric D Becraft; Mary M Bateson; Oliver Kilian; Devaki Bhaya; David M Ward; John W Peters; Arthur R Grossman; Michael Kühl
Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat.
The ISME journal 2008;2(4):364-78.
2008: Alexander Koeppel; Elizabeth B Perry; Johannes Sikorski; Danny Krizanc; Andrew Warner; David M Ward; Alejandro P Rooney; Evelyne Brambilla; Nora Connor; Rodney M Ratcliff; Eviatar Nevo; Frederick M Cohan
Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(7):2504-9.
2008: David M Ward; Frederick M Cohan; Devaki Bhaya; John F Heidelberg; Michael Kühl; A Grossman
Genomics, environmental genomics and the issue of microbial species.
Heredity 2008;100(2):207-19.
2007: Devaki Bhaya; Arthur R Grossman; Anne-Soisig Steunou; Natalia Khuri; Frederick M Cohan; Natsuko Hamamura; Melanie C Melendrez; Mary M Bateson; David M Ward; John F Heidelberg
Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.
The ISME journal 2007;1(8):703-13.
2007: Stefan Schouten; Marcel T J van der Meer; Ellen C Hopmans; W Irene C Rijpstra; Anna-Louise Reysenbach; David M Ward; Jaap S Sinninghe Damsté
Archaeal and bacterial glycerol dialkyl glycerol tetraether lipids in hot springs of yellowstone national park.
Applied and environmental microbiology 2007;73(19):6181-91.
2007: Christian G Klatt; Donald A Bryant; David M Ward
Comparative genomics provides evidence for the 3-hydroxypropionate autotrophic pathway in filamentous anoxygenic phototrophic bacteria and in hot spring microbial mats.
Environmental microbiology 2007;9(8):2067-78.
2007: Donald A Bryant; Amaya M Garcia Costas; Julia A Maresca; Aline Gomez Maqueo Chew; Christian G Klatt; Mary M Bateson; Luke J Tallon; Jessica Hostetler; William C Nelson; John F Heidelberg; David M Ward
Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium.
Science (New York, N.Y.) 2007;317(5837):523-6.
2007: Gregory M Colores; David M Ward; William P Inskeep
Competitive fitness of isolates enriched on phenanthrene sorbed to model phases.
Applied and environmental microbiology 2007;73(12):4074-7.
2007: Marcel T J van der Meer; Stefan Schouten; Jaap S Sinninghe Damsté; David M Ward
Impact of carbon metabolism on 13C signatures of cyanobacteria and green non-sulfur-like bacteria inhabiting a microbial mat from an alkaline siliceous hot spring in Yellowstone National Park (USA).
Environmental microbiology 2007;9(2):482-91.
2006: David M Ward; Mary M Bateson; Michael J Ferris; Michael Kühl; Andrea Wieland; Alex Koeppel; Frederick M Cohan
Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1475):1997-2008.
2006: David M Ward
Microbial diversity in natural environments: focusing on fundamental questions.
Antonie van Leeuwenhoek 2006;90(4):309-24.
2006: Natsuko Hamamura; Sarah H Olson; David M Ward; William P Inskeep
Microbial population dynamics associated with crude-oil biodegradation in diverse soils.
Applied and environmental microbiology 2006;72(9):6316-24.
2006: Anne-Soisig Steunou; Devaki Bhaya; Mary M Bateson; Melanie C Melendrez; David M Ward; Eric Brecht; John W Peters; Michael Kühl; Arthur R Grossman
In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(7):2398-403.
2006: Jessica P Allewalt; Mary M Bateson; Niels Peter Revsbech; Kimberly Slack; David M Ward
Effect of temperature and light on growth of and photosynthesis by Synechococcus isolates typical of those predominating in the octopus spring microbial mat community of Yellowstone National Park.
Applied and environmental microbiology 2006;72(1):544-50.
2005: Natsuko Hamamura; Sarah H Olson; David M Ward; William P Inskeep
Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park.
Applied and environmental microbiology 2005;71(10):5943-50.
2005: Marcel T J van der Meer; Stefan Schouten; Mary M Bateson; Ulrich Nübel; Andrea Wieland; Michael Kühl; Jan W de Leeuw; Jaap S Sinninghe Damsté; David M Ward
Diel variations in carbon metabolism by green nonsulfur-like bacteria in alkaline siliceous hot spring microbial mats from Yellowstone National Park.
Applied and environmental microbiology 2005;71(7):3978-86.
2004: R Thane Papke; David M Ward
The importance of physical isolation to microbial diversification.
FEMS microbiology ecology 2004;48(3):293-303.
2003: Marcel T J van der Meer; Stefan Schouten; Jaap S Sinninghe Damsté; Jan W de Leeuw; David M Ward
Compound-specific isotopic fractionation patterns suggest different carbon metabolisms among Chloroflexus-like bacteria in hot-spring microbial mats.
Applied and environmental microbiology 2003;69(10):6000-6.
2003: R Thane Papke; Niels Birger Ramsing; Mary M Bateson; David M Ward
Geographical isolation in hot spring cyanobacteria.
Environmental microbiology 2003;5(8):650-9.
2003: Michael J Ferris; Michael Kühl; Andrea Wieland; David M Ward
Cyanobacterial ecotypes in different optical microenvironments of a 68 degrees C hot spring mat community revealed by 16S-23S rRNA internal transcribed spacer region variation.
Applied and environmental microbiology 2003;69(5):2893-8.
2002: Ulrich Nübel; Mary M Bateson; Verona Vandieken; Andrea Wieland; Michael Kühl; David M Ward
Microscopic examination of distribution and phenotypic properties of phylogenetically diverse Chloroflexaceae-related bacteria in hot spring microbial mats.
Applied and environmental microbiology 2002;68(9):4593-603.
2002: Marcel T J van ver Meer; Stefan Schouten; Satoshi Hanada; Ellen C Hopmans; Jaap S Sinninghe Damsté; David M Ward
Alkane-1,2-diol-based glycosides and fatty glycosides and wax esters in Roseiflexus castenholzii and hot spring microbial mats.
Archives of microbiology 2002;178(3):229-37.
2001: Ulrich Nübel; Mary M Bateson; Michael Madigan; Michael Kühl; David M Ward
Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp.
Applied and environmental microbiology 2001;67(9):4365-71.
2001: Marcel T J van der Meer; Stefan Schouten; BE van Dongen; W Irene C Rijpstra; G Fuchs; Jaap S Sinninghe Damsté; Jan W de Leeuw; David M Ward
Biosynthetic controls on the 13C contents of organic components in the photoautotrophic bacterium Chloroflexus aurantiacus.
The Journal of biological chemistry 2001;276(24):10971-6.
2001: Marcel T J van der Meer; Stefan Schouten; BE van Dongen; W Irene C Rijpstra; G Fuchs; J S Damste; Jan W de Leeuw; David M Ward
Biosynthetic controls on the 13C contents of organic components in the photoautotrophic bacterium Chloroflexus aurantiacus.
The Journal of biological chemistry 2001;276(14):10971-6.
2000: Marcel T J van der Meer; Stefan Schouten; Jan W de Leeuw; David M Ward
Autotrophy of green non-sulphur bacteria in hot spring microbial mats: biological explanations for isotopically heavy organic carbon in the geological record.
Environmental microbiology 2000;2(4):428-35.
2000: Gregory M Colores; Richard E Macur; David M Ward; William P Inskeep
Molecular analysis of surfactant-driven microbial population shifts in hydrocarbon-contaminated soil.
Applied and environmental microbiology 2000;66(7):2959-64.
2000: M Friedrich; R J Grosser; E A Kern; William P Inskeep; David M Ward
Effect of model sorptive phases on phenanthrene biodegradation: molecular analysis of enrichments and isolates suggests selection based on bioavailability.
Applied and environmental microbiology 2000;66(7):2703-10.
2000: R J Grosser; M Friedrich; David M Ward; William P Inskeep
Effect of model sorptive phases on phenanthrene biodegradation: different enrichment conditions influence bioavailability and selection of phenanthrene-degrading isolates.
Applied and environmental microbiology 2000;66(7):2695-702.
2000: Niels Birger Ramsing; Michael J Ferris; David M Ward
Highly ordered vertical structure of Synechococcus populations within the one-millimeter-thick photic zone of a hot spring cyanobacterial mat.
Applied and environmental microbiology 2000;66(3):1038-49.
1999: Marcel T J van der Meer; Stefan Schouten; David M Ward; Jan A J Geenevasen; J S Sinninghe Damste
All-cis hentriaconta-9,15,22-triene in microbial mats formed by the phototrophic prokaryote Chloroflexus.
Organic geochemistry 1999;30(12):1585-7.
1998: David M Ward; Michael J Ferris; SC Nold; Mary M Bateson
A natural view of microbial biodiversity within hot spring cyanobacterial mat communities.
Microbiology and molecular biology reviews : MMBR 1998;62(4):1353-70.
1998: David M Ward
Microbiology in Yellowstone National Park.
ASM news 1998;64(3):141-6.
1997: Niels Birger Ramsing; Michael J Ferris; David M Ward
Light-induced motility of thermophilic Synechococcus isolates from Octopus Spring, Yellowstone National Park.
Applied and environmental microbiology 1997;63(6):2347-54.
1997: Michael J Ferris; David M Ward
Seasonal distributions of dominant 16S rRNA-defined populations in a hot spring microbial mat examined by denaturing gradient gel electrophoresis.
Applied and environmental microbiology 1997;63(4):1375-81.
1997: Michael J Ferris; SC Nold; Niels Peter Revsbech; David M Ward
Population structure and physiological changes within a hot spring microbial mat community following disturbance.
Applied and environmental microbiology 1997;63(4):1367-74.
1997: David M Ward; C M Santegoeds; SC Nold; Niels Birger Ramsing; Michael J Ferris; Mary M Bateson
Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment cultures.
Antonie van Leeuwenhoek 1997;71(1-2):143-50.
1996: C M Santegoeds; S C Nold; David M Ward
Denaturing gradient gel electrophoresis used to monitor the enrichment culture of aerobic chemoorganotrophic bacteria from a hot spring cyanobacterial mat.
Applied and environmental microbiology 1996;62(11):3922-8.
1996: S C Nold; E D Kopczynski; David M Ward
Cultivation of aerobic chemoorganotrophic proteobacteria and gram-positive bacteria from a hot spring microbial mat.
Applied and environmental microbiology 1996;62(11):3917-21.
1996: Michael J Ferris; A L Ruff-Roberts; E D Kopczynski; Mary M Bateson; David M Ward
Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat.
Applied and environmental microbiology 1996;62(3):1045-50.
1996: Michael J Ferris; G Muyzer; David M Ward
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community.
Applied and environmental microbiology 1996;62(2):340-6.
1995: J F Robison-Cox; Mary M Bateson; David M Ward
Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences.
Applied and environmental microbiology 1995;61(4):1240-5.
1995: S C Nold; David M Ward
Diverse Thermus species inhabit a single hot spring microbial mat.
Systematic and applied microbiology 1995;18():274-8.
1994: David M Ward; S Panke; K D Kloppel; R Christ; H Fredrickson
Complex polar lipids of a hot spring cyanobacterial mat and its cultivated inhabitants.
Applied and environmental microbiology 1994;60(9):3358-67.
1994: A L Ruff-Roberts; J G Kuenen; David M Ward
Distribution of cultivated and uncultivated cyanobacteria and Chloroflexus-like bacteria in hot spring microbial mats.
Applied and environmental microbiology 1994;60(2):697-704.
1994: E D Kopczynski; Mary M Bateson; David M Ward
Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms.
Applied and environmental microbiology 1994;60(2):746-8.
1992: R Weller; Mary M Bateson; B K Heimbuch; E D Kopczynski; David M Ward
Uncultivated cyanobacteria, Chloroflexus-like inhabitants, and spirochete-like inhabitants of a hot spring microbial mat.
Applied and environmental microbiology 1992;58(12):3964-9.
1991: R Weller; J W Weller; David M Ward
16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA.
Applied and environmental microbiology 1991;57(4):1146-51.
1990: David M Ward; R Weller; M M Bateson
16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community.
FEMS microbiology reviews 1990;6(2-3):105-15.
1990: David M Ward; R Weller; M M Bateson
16S rRNA sequences reveal numerous uncultured microorganisms in a natural community.
Nature 1990;345(6270):63-5.
1989: R Weller; David M Ward
Selective Recovery of 16S rRNA Sequences from Natural Microbial Communities in the Form of cDNA.
Applied and environmental microbiology 1989;55(7):1818-22.
1988: Mary M Bateson; David M Ward
Photoexcretion and fate of glycolate in a hot spring cyanobacterial mat.
Applied and environmental microbiology 1988;54(7):1738-43.
1987: K L Anderson; T A Tayne; David M Ward
Formation and fate of fermentation products in hot spring cyanobacterial mats.
Applied and environmental microbiology 1987;53(10):2343-52.
1987: T A Tayne; Jim E Cutler; David M Ward
Use of chloroflexus-specific antiserum to evaluate filamentous bacteria of a hot spring microbial mat.
Applied and environmental microbiology 1987;53(8):1962-4.
1984: Niels Peter Revsbech; David M Ward
Microelectrode studies of interstitial water chemistry and photosynthetic activity in a hot spring microbial mat.
Applied and environmental microbiology 1984;48(2):270-5.
1983: Niels Peter Revsbech; David M Ward
Oxygen Microelectrode That Is Insensitive to Medium Chemical Composition: Use in an Acid Microbial Mat Dominated by Cyanidium caldarium.
Applied and environmental microbiology 1983;45(3):755-9.
1983: M R Winfrey; David M Ward
Substrates for sulfate reduction and methane production in intertidal sediments.
Applied and environmental microbiology 1983;45(1):193-9.
1982: K A Sandbeck; David M Ward
Temperature adaptations in the terminal processes of anaerobic decomposition of yellowstone national park and icelandic hot spring microbial mats.
Applied and environmental microbiology 1982;44(4):844-51.
1981: K A Sandbeck; David M Ward
Fate of immediate methane precursors in low-sulfate, hot-spring algal-bacterial mats.
Applied and environmental microbiology 1981;41(3):775-82.
1980: David M Ward; G J Olson
Terminal processes in the anaerobic degradation of an algal-bacterial mat in a high-sulfate hot spring.
Applied and environmental microbiology 1980;40(1):67-74.
1978: David M Ward; T D Brock
Hydrocarbon biodegradation in hypersaline environments.
Applied and environmental microbiology 1978;35(2):353-9.