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Robbie Waugh
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Research Profile (preview)
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Chemicals & Drugs
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Network (preview)
16
Powell, Wayne
11
Cardle, Linda
10
Druka, Arnis
7
Ramsay, Luke
7
Bryan, Glenn
6
Potokina, Elena
6
Marshall, David
6
Rostoks, Nils
5
Milbourne, Dan
4
Marshall, David
4
Macaulay, M
4
Kearsey, Michael
4
Kleinhofs, Andris
4
Brown, John
4
Close, Timothy
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Publications
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Geonetwork of Robbie Waugh (preview)
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All Publications
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2009: Wang Minghui; Hu Xiaohua; Li Gang; Leach Lindsey J; Potokina Elena; Druka Arnis; Waugh Robbie; Kearsey Michael J; Luo Zewei
Robust detection and genotyping of single feature polymorphisms from gene expression data.
PLoS computational biology 2009;5(3):e1000317.
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2009: Song Beng-Kah; Hein Ingo; Druka Arnis; Waugh Robbie; Marshall David; Nadarajah Kalaivani; Yap Soon-Joo; Ratnam Wickneswari
The 172-kb genomic DNA region of the O. rufipogon yld1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica.
Functional & integrative genomics 2009;9(1):97-108.
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2009: Schreiber Andreas W; Sutton Tim; Caldo Rico A; Kalashyan Elena; Lovell Ben; Mayo Gwenda; Muehlbauer Gary J; Druka Arnis; Waugh Robbie; Wise Roger P; Langridge Peter; Baumann Ute
Comparative transcriptomics in the Triticeae.
BMC genomics 2009;10():285.
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2008: Potokina Elena; Druka Arnis; Luo Zewei; Moscou Matthew; Wise Roger; Waugh Robbie; Kearsey Mike
Tissue-dependent limited pleiotropy affects gene expression in barley.
The Plant journal : for cell and molecular biology 2008;56(2):287-96.
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2008: Lyons Maura; Cardle Linda; Rostoks Nils; Waugh Robbie; Flavell Andrew J
Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome.
Molecular genetics and genomics : MGG 2008;280(4):275-85.
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2008: Druka Arnis; Potokina Elena; Luo Zewei; Bonar Nicola; Druka Ilze; Zhang Ling; Marshall David F; Steffenson Brian J; Close Timothy J; Wise Roger P; Kleinhofs Andris; Williams Robert W; Kearsey Michael J; Waugh Robbie
Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2008;117(2):261-72.
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2008: Potokina Elena; Druka Arnis; Luo Zewei; Wise Roger; Waugh Robbie; Kearsey Mike
Gene expression quantitative trait locus analysis of 16 000 barley genes reveals a complex pattern of genome-wide transcriptional regulation.
The Plant journal : for cell and molecular biology 2008;53(1):90-101.
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2008: Bradshaw John E; Hackett Christine A; Pande Barnaly; Waugh Robbie; Bryan Glenn J
QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum).
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2008;116(2):193-211.
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2008: Druka Arnis; Druka Ilze; Centeno Arthur G; Li Hongqiang; Sun Zhaohui; Thomas William T B; Bonar Nicola; Steffenson Brian J; Ullrich Steven E; Kleinhofs Andris; Wise Roger P; Close Timothy J; Potokina Elena; Luo Zewei; Wagner Carola; Schweizer Günther F; Marshall David F; Kearsey Michael J; Williams Robert W; Waugh Robbie
Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork.
BMC genetics 2008;9():73.
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2008: Jiang Ning; Leach Lindsey J; Hu Xiaohua; Potokina Elena; Jia Tianye; Druka Arnis; Waugh Robbie; Kearsey Michael J; Luo Zewei W
Methods for evaluating gene expression from Affymetrix microarray datasets.
BMC bioinformatics 2008;9():284.
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2007: Luo Z W; Potokina E; Druka A; Wise R; Waugh R; Kearsey M J
SFP genotyping from affymetrix arrays is robust but largely detects cis-acting expression regulators.
Genetics 2007;176(2):789-800.
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2007: Varshney R K; Marcel T C; Ramsay L; Russell J; Röder M S; Stein N; Waugh R; Langridge P; Niks R E; Graner A
A high density barley microsatellite consensus map with 775 SSR loci.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2007;114(6):1091-103.
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2007: Bevan Michael; Waugh Robbie
Applying plant genomics to crop improvement.
Genome biology 2007;8(2):302.
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2006: Rostoks Nils; Ramsay Luke; MacKenzie Katrin; Cardle Linda; Bhat Prasanna R; Roose Mikeal L; Svensson Jan T; Stein Nils; Varshney Rajeev K; Marshall David F; Graner Andreas; Close Timothy J; Waugh Robbie
Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(49):18656-61.
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2006: Druka Arnis; Muehlbauer Gary; Druka Ilze; Caldo Rico; Baumann Ute; Rostoks Nils; Schreiber Andreas; Wise Roger; Close Timothy; Kleinhofs Andris; Graner Andreas; Schulman Alan; Langridge Peter; Sato Kazuhiro; Hayes Patrick; McNicol Jim; Marshall David; Waugh Robbie
An atlas of gene expression from seed to seed through barley development.
Functional & integrative genomics 2006;6(3):202-11.
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2006: van Os Hans; Andrzejewski Sandra; Bakker Erin; Barrena Imanol; Bryan Glenn J; Caromel Bernard; Ghareeb Bilal; Isidore Edwige; de Jong Walter; van Koert Paul; Lefebvre Véronique; Milbourne Dan; Ritter Enrique; van der Voort Jeroen N A M Rouppe; Rousselle-Bourgeois Françoise; van Vliet Joke; Waugh Robbie; Visser Richard G F; Bakker Jaap; van Eck Herman J
Construction of a 10,000-marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and a genomewide physical map.
Genetics 2006;173(2):1075-87.
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2006: Waugh Robbie; Leader David J; McCallum Nicola; Caldwell David
Harvesting the potential of induced biological diversity.
Trends in plant science 2006;11(2):71-9.
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2006: Rostoks Nils; Schmierer Deric; Mudie Sharon; Drader Thomas; Brueggeman Robert; Caldwell David G; Waugh Robbie; Kleinhofs Andris
Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1.
Molecular genetics and genomics : MGG 2006;275(2):159-68.
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2005: Rostoks Nils; Mudie Sharon; Cardle Linda; Russell Joanne; Ramsay Luke; Booth Allan; Svensson Jan T; Wanamaker Steve I; Walia Harkamal; Rodriguez Edmundo M; Hedley Peter E; Liu Hui; Morris Jenny; Close Timothy J; Marshall David F; Waugh Robbie
Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.
Molecular genetics and genomics : MGG 2005;274(5):515-27.
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2005: Spooner David M; McLean Karen; Ramsay Gavin; Waugh Robbie; Bryan Glenn J
A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(41):14694-9.
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2005: Ibrahim Adel F M; Hedley Peter E; Cardle Linda; Kruger Warren; Marshall David F; Muehlbauer Gary J; Waugh Robbie
A comparative analysis of transcript abundance using SAGE and Affymetrix arrays.
Functional & integrative genomics 2005;5(3):163-74.
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2005: Liu Hui; Hedley Peter; Cardle Linda; Wright Kathryn M; Hein Ingo; Marshall David; Waugh Robbie
Characterisation and functional analysis of two barley caleosins expressed during barley caryopsis development.
Planta 2005;221(4):513-22.
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2005: Isidore Edwige; Scherrer Beatrice; Bellec Arnaud; Budin Karine; Faivre-Rampant Patricia; Waugh Robbie; Keller Beat; Caboche Michel; Feuillet Catherine; Chalhoub Boulos
Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region.
Functional & integrative genomics 2005;5(2):97-103.
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2005: Rostoks Nils; Borevitz Justin O; Hedley Peter E; Russell Joanne; Mudie Sharon; Morris Jenny; Cardle Linda; Marshall David F; Waugh Robbie
Single-feature polymorphism discovery in the barley transcriptome.
Genome biology 2005;6(6):R54.
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2004: Bradshaw John E; Pande Barnaly; Bryan Glenn J; Hackett Christine A; McLean Karen; Stewart Helen E; Waugh Robbie
Interval mapping of quantitative trait loci for resistance to late blight [Phytophthora infestans (Mont.) de Bary], height and maturity in a tetraploid population of potato (Solanum tuberosum subsp. tuberosum).
Genetics 2004;168(2):983-95.
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2004: Caldwell David G; McCallum Nicola; Shaw Paul; Muehlbauer Gary J; Marshall David F; Waugh Robbie
A structured mutant population for forward and reverse genetics in Barley (Hordeum vulgare L.).
The Plant journal : for cell and molecular biology 2004;40(1):143-50.
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2004: Piffanelli Pietro; Ramsay Luke; Waugh Robbie; Benabdelmouna Abdellah; D'Hont Angélique; Hollricher Karin; Jørgensen Jørgen Helms; Schulze-Lefert Paul; Panstruga Ralph
A barley cultivation-associated polymorphism conveys resistance to powdery mildew.
Nature 2004;430(7002):887-91.
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2003: Isidore Edwige; van Os Hans; Andrzejewski Sandra; Bakker Jaap; Barrena Imanol; Bryan Glenn J; Caromel Bernard; van Eck Herman; Ghareeb Bilal; de Jong Walter; van Koert Paul; Lefebvre Véronique; Milbourne Dan; Ritter Enrique; van der Voort Jeroen Rouppe; Rousselle-Bourgeois Françoise; van Vliet Joke; Waugh Robbie
Toward a marker-dense meiotic map of the potato genome: lessons from linkage group I.
Genetics 2003;165(4):2107-16.
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2002: Bell Kenneth S; Avrova Anna O; Holeva Maria C; Cardle Linda; Morris Wayne; De Jong Walter; Toth Ian K; Waugh Robbie; Bryan Glenn J; Birch Paul R J
Sample sequencing of a selected region of the genome of Erwinia carotovora subsp. atroseptica reveals candidate phytopathogenicity genes and allows comparison with Escherichia coli.
Microbiology (Reading, England) 2002;148(Pt 5):1367-78.
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2001: Whisson S C; van der Lee T; Bryan G J; Waugh R; Govers F; Birch P R
Physical mapping across an avirulence locus of Phytophthora infestans using a highly representative, large-insert bacterial artificial chromosome library.
Molecular genetics and genomics : MGG 2001;266(2):289-95.
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2000: Ramsay L; Macaulay M; degli Ivanissevich S; MacLean K; Cardle L; Fuller J; Edwards K J; Tuvesson S; Morgante M; Massari A; Maestri E; Marmiroli N; Sjakste T; Ganal M; Powell W; Waugh R
A simple sequence repeat-based linkage map of barley.
Genetics 2000;156(4):1997-2005.
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2000: Cardle L; Ramsay L; Milbourne D; Macaulay M; Marshall D; Waugh R
Computational and experimental characterization of physically clustered simple sequence repeats in plants.
Genetics 2000;156(2):847-54.
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2000: Dicks J; Anderson M; Cardle L; Cartinhour S; Couchman M; Davenport G; Dickson J; Gale M; Marshall D; May S; McWilliam H; O'Malia A; Ougham H; Trick M; Walsh S; Waugh R
UK CropNet: a collection of databases and bioinformatics resources for crop plant genomics.
Nucleic acids research 2000;28(1):104-7.
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1999: Ramsay L; Macaulay M; Cardle L; Morgante M; degli Ivanissevich S; Maestri E; Powell W; Waugh R
Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley.
The Plant journal : for cell and molecular biology 1999;17(4):415-25.
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1998: Milbourne D; Meyer R C; Collins A J; Ramsay L D; Gebhardt C; Waugh R
Isolation, characterisation and mapping of simple sequence repeat loci in potato.
Molecular & general genetics : MGG 1998;259(3):233-45.
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1998: Meyer R C; Milbourne D; Hackett C A; Bradshaw J E; McNichol J W; Waugh R
Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans).
Molecular & general genetics : MGG 1998;259(2):150-60.
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1997: Russell J; Fuller J; Young G; Thomas B; Taramino G; Macaulay M; Waugh R; Powell W
Discriminating between barley genotypes using microsatellite markers.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1997;40(4):442-50.
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1997: Waugh R; Bonar N; Baird E; Thomas B; Graner A; Hayes P; Powell W
Homology of AFLP products in three mapping populations of barley.
Molecular & general genetics : MGG 1997;255(3):311-21.
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1997: Waugh R; McLean K; Flavell A J; Pearce S R; Kumar A; Thomas B B; Powell W
Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP).
Molecular & general genetics : MGG 1997;253(6):687-94.
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1997: Kumar A; Pearce S R; McLean K; Harrison G; Heslop-Harrison J S; Waugh R; Flavell A J
The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers.
Genetica 1997;100(1-3):205-17.
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1996: Provan J; Corbett G; Waugh R; McNicol J W; Morgante M; Powell W
DNA fingerprints of rice (Oryza sativa) obtained from hypervariable chloroplast simple sequence repeats.
Proceedings. Biological sciences / The Royal Society 1996;263(1375):1275-81.
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1996: Bournay A S; Hedley P E; Maddison A; Waugh R; Machray G C
Exon skipping induced by cold stress in a potato invertase gene transcript.
Nucleic acids research 1996;24(12):2347-51.
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1996: Dawson I K; Simons A J; Waugh R; Powell W
Detection and pattern of interspecific hybridization between Gliricida sepium and G. maculata in Meso-America revealed by PCR-based assays.
Molecular ecology 1996;5(1):89-98.
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1995: Powell W; Orozco-Castillo C; Chalmers K J; Provan J; Waugh R
Polymerase chain reaction-based assays for the characterisation of plant genetic resources.
Electrophoresis 1995;16(9):1726-30.
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1995: Leader D J; Sanders J F; Turnbull-Ross A; Waugh R; Brown J W
Genomic organisation of plant U14 snoRNA genes.
Biochemical Society transactions 1995;23(2):314S.
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1995: Wachira F N; Waugh R; Hackett C A; Powell W
Detection of genetic diversity in tea (Camellia sinensis) using RAPD markers.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1995;38(2):201-10.
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1995: Dawson I K; Simons A J; Waugh R; Powell W
Diversity and genetic differentiation among subpopulations of Gliricidia sepium revealed by PCR-based assays.
Heredity 1995;74 ( Pt 1)():10-8.
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1994: Brown J W; Simpson C G; Clark G P; Waugh R
Complementary deletions in expressed potato U2snRNA gene variants support the hypothesis that stem-loop IIb is dispensable for splicing.
The Plant journal : for cell and molecular biology 1994;6(6):921-5.
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1994: Leader D J; Sanders J F; Waugh R; Shaw P; Brown J W
Molecular characterisation of plant U14 small nucleolar RNA genes: closely linked genes are transcribed as polycistronic U14 transcripts.
Nucleic acids research 1994;22(24):5196-203.
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1994: Machray G C; Burch L; Hedley P E; Davies H V; Waugh R
Characterisation of a complementary DNA encoding a novel plant enzyme with sucrolytic activity.
FEBS letters 1994;354(1):123-7.
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1994: Hedley P E; Machray G C; Davies H V; Burch L; Waugh R
Potato (Solanum tuberosum) invertase-encoding cDNAs and their differential expression.
Gene 1994;145(2):211-4.
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1993: Barua U M; Chalmers K J; Hackett C A; Thomas W T; Powell W; Waugh R
Identification of RAPD markers linked to a Rhynchosporium secalis resistance locus in barley using near-isogenic lines and bulked segregant analysis.
Heredity 1993;71 ( Pt 2)():177-84.
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1993: Hedley P E; Machray G C; Davies H V; Burch L; Waugh R
cDNA cloning and expression of a potato (Solanum tuberosum) invertase.
Plant molecular biology 1993;22(5):917-22.
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1993: Guerineau F; Waugh R
The U6 small nuclear RNA gene family of potato.
Plant molecular biology 1993;22(5):807-18.
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1993: Dawson I K; Chalmers K J; Waugh R; Powell W
Detection and analysis of genetic variation in Hordeum spontaneum populations from Israel using RAPD markers.
Molecular ecology 1993;2(3):151-9.
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1993: Russell J R; Hosein F; Johnson E; Waugh R; Powell W
Genetic differentiation of cocoa (Theobroma cacao L.) populations revealed by RAPD analysis.
Molecular ecology 1993;2(2):89-97.
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1993: Leader D; Connelly S; Filipowicz W; Waugh R; Brown J W
Differential expression of U5snRNA gene variants in maize (Zea mays) protoplasts.
Plant molecular biology 1993;21(1):133-43.
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1992: Chalmers K J; Waugh R; Sprent J I; Simons A J; Powell W
Detection of genetic variation between and within populations of Gliricidia sepium and G. maculata using RAPD markers.
Heredity 1992;69 ( Pt 5)():465-72.
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1992: Vaux P; Guerineau F; Waugh R; Brown J W
Characterization and expression of U1snRNA genes from potato.
Plant molecular biology 1992;19(6):959-71.
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1992: Baird E; Cooper-Bland S; Waugh R; DeMaine M; Powell W
Molecular characterisation of inter- and intra-specific somatic hybrids of potato using randomly amplified polymorphic DNA (RAPD) markers.
Molecular & general genetics : MGG 1992;233(3):469-75.
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1992: Powell W; Thomas W T; Thompson D M; Swanston J S; Waugh R
Association between rDNA alleles and quantitative traits in doubled haploid populations of barley.
Genetics 1992;130(1):187-94.
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1991: Waugh R; Clark G; Brown J W
Sequence variation and linkage of potato U2snRNA-encoding genes established by PCR.
Gene 1991;107(2):197-204.
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1991: Simpson G G; Vaux P; Clark G; Waugh R; Beggs J D; Brown J W
Evolutionary conservation of the spliceosomal protein, U2B''.
Nucleic acids research 1991;19(19):5213-7.
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1991: Waugh R; Clark G; Vaux P; Brown J W
Sequence and expression of potato U2 snRNA genes.
Nucleic acids research 1991;19(2):249-56.
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1990: Vaux P; Leader D J; Waugh R; Brown J W
Plant UsnRNA genes.
Molecular biology reports 1990;14(2-3):147.
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1989: Brown J W; Waugh R
Maize U2 snRNAs: gene sequence and expression.
Nucleic acids research 1989;17(22):8991-9001.
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