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Shimon Weiss

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Nicole C Robb; Yusdi Santoso; Shimon Weiss; Thorben Cordes; Timothy D Craggs; Diego Duchi; Richard H Ebright; Kristofer Gryte; Ling Chin Hwang; Achillefs N Kapanidis
The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection.
Kyoungwon Park; Zvicka Deutsch; J Jack Li; Dan Oron; Shimon Weiss
Single molecule quantum-confined Stark effect measurements of semiconductor nanoparticles at room temperature.
Jianmin Xu; Ting-Hsiang Wu; Pei-Yu Chiou; Michael A Teitell; Tara Teslaa; Shimon Weiss
Nanoblade delivery and incorporation of quantum dot conjugates into tubulin networks in live cells.

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2013: Nicole C Robb; Yusdi Santoso; Shimon Weiss; Thorben Cordes; Timothy D Craggs; Diego Duchi; Richard H Ebright; Kristofer Gryte; Ling Chin Hwang; Achillefs N Kapanidis
The transcription bubble of the RNA polymerase-promoter open complex exhibits conformational heterogeneity and millisecond-scale dynamics: implications for transcription start-site selection.
Journal of molecular biology 2013;425(5):875-85.
2012: Kyoungwon Park; Zvicka Deutsch; J Jack Li; Dan Oron; Shimon Weiss
Single molecule quantum-confined Stark effect measurements of semiconductor nanoparticles at room temperature.
ACS nano 2012;6(11):10013-23.
2012: Jianmin Xu; Ting-Hsiang Wu; Pei-Yu Chiou; Michael A Teitell; Tara Teslaa; Shimon Weiss
Nanoblade delivery and incorporation of quantum dot conjugates into tubulin networks in live cells.
Nano letters 2012;12(11):5669-72.
2012: Jianmin Xu; Yuval Ebenstain; J Jack Li; Piotr Ruchala; Shimon Weiss
Stable, compact, bright biofunctional quantum dots with improved peptide coating.
The journal of physical chemistry. B 2012;116(36):11370-8.
2012: Anirban Chakraborty; Saikat Chowdhury; Yon W Ebright; Herbert Irschik; Rolf Jansen; Taiho Kim; Jennifer Knight; You Korlann; Ekaterine Kortkhonjia; B Tracy Nixon; Dongye Wang; Shimon Weiss; Siva Wigneshweraraj; Richard H. Ebright
Opening and closing of the bacterial RNA polymerase clamp.
Science (New York, N.Y.) 2012;337(6094):591-5.
2012: Vincent A Voelz; Steven A Waldauer; Shimon Weiss; Shuhuai Yao; Li Zhu; Olgica Bakajin; Gregory R Bowman; Yujie Chen; Mark Friedrichs; Marcus Jäger; Lisa J Lapidus; Vijay S Pande
Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment.
Journal of the American Chemical Society 2012;134(30):12565-77.
2012: Soohong Kim; Ron R Lin; Elmar Weinhold; Shimon Weiss; Sangyoon Chung; Ryan A Colyer; Thomas Dertinger; Anna Gottfried; Andrew S Kim; Yuval Ebenstein
Enzymatically incorporated genomic tags for optical mapping of DNA-binding proteins.
Angewandte Chemie (International ed. in English) 2012;51(15):3578-81.
2012: Ryan A Colyer; Oswald H W Siegmund; Anton S Tremsin; John V Vallerga; Shimon Weiss; Xavier Michalet
Phasor imaging with a widefield photon-counting detector.
Journal of biomedical optics 2012;17(1):016008.
2012: Thomas Dertinger; Joerg Enderlein; Mike Heilemann; Markus Sauer; Robert Vogel; Ryan Colyer; Shimon Weiss
Superresolution optical fluctuation imaging (SOFI).
Advances in experimental medicine and biology 2012;733():17-21.
2011: Gopal Iyer; Jack Li; Fabien Pinaud; Jessica Chang; Maxime Dahan; Yuval Ebenstein; Jianmin Xu; Shimon Weiss
Aromatic aldehyde and hydrazine activated peptide coated quantum dots for easy bioconjugation and live cell imaging.
Bioconjugate chemistry 2011;22(6):1006-11.
2010: Thomas Dertinger; Mike Heilemann; Robert Vogel; Markus Sauer; Shimon Weiss
Superresolution optical fluctuation imaging with organic dyes.
Angewandte Chemie (International ed. in English) 2010;49(49):9441-3.
2010: Gopal Iyer; Xavier Michalet; Yun-Pei Chang; Shimon Weiss
Tracking single proteins in live cells using single-chain antibody fragment-fluorescent quantum dot affinity pair.
Methods in enzymology 2010;475():61-79.
2009: Christopher Liu; Sang-Yoon Chung; Sungyul Lee; Shimon Weiss; Daniel Neuhauser
Adsorbate-induced absorption redshift in an organic-inorganic cluster conjugate: Electronic effects of surfactants and organic adsorbates on the lowest excited states of a methanethiol-CdSe conjugate.
The Journal of chemical physics 2009;131(17):174705.
2009: Yuval Ebenstein; Natalie Gassman; Soohong Kim; Shimon Weiss
Combining atomic force and fluorescence microscopy for analysis of quantum-dot labeled protein-DNA complexes.
Journal of molecular recognition : JMR 2009;22(5):397-402.
2009: Bhaswati Barat; Shannon J Sirk; Katelyn E McCabe; Jianqing Li; Eric J Lepin; Roland Remenyi; Ai Leen Koh; Tove Olafsen; Sanjiv S Gambhir; Shimon Weiss; Anna M Wu
Cys-diabody quantum dot conjugates (immunoQdots) for cancer marker detection.
Bioconjugate chemistry 2009;20(8):1474-81.
2009: Xavier Michalet; R A Colyer; J Antelman; O H W Siegmund; A Tremsin; J V Vallerga; Shimon Weiss
Single-quantum dot imaging with a photon counting camera.
Current pharmaceutical biotechnology 2009;10(5):543-58.
2009: Fabien Pinaud; Xavier Michalet; Gopal Iyer; Emmanuel Margeat; Hsiao-Ping Moore; Shimon Weiss
Dynamic partitioning of a glycosyl-phosphatidylinositol-anchored protein in glycosphingolipid-rich microdomains imaged by single-quantum dot tracking.
Traffic (Copenhagen, Denmark) 2009;10(6):691-712.
2009: Josh Antelman; Connie Wilking-Chang; Shimon Weiss; Xavier Michalet
Nanometer distance measurements between multicolor quantum dots.
Nano letters 2009;9(5):2199-205.
2009: Natalie Gassman; Sam On Ho; You Korlann; Janet Chiang; Yim Wu; L Jeanne Perry; Younggyu Kim; Shimon Weiss
In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1.
Protein expression and purification 2009;65(1):66-76.
2009: Yuval Ebenstein; Natalie Gassman; Soohong Kim; Josh Antelman; Younggyu Kim; Sam Ho; Robin Samuel; Xavier Michalet; Shimon Weiss
Lighting up individual DNA binding proteins with quantum dots.
Nano letters 2009;9(4):1598-603.
2009: Laurent A Bentolila; Yuval Ebenstein; Shimon Weiss
Quantum dots for in vivo small-animal imaging.
Journal of nuclear medicine : official publication, Society of Nuclear Medicine 2009;50(4):493-6.
2008: Gopal Iyer; Xavier Michalet; Yun-Pei Chang; Fabien Pinaud; Stephanie E Matyas; Gregory Payne; Shimon Weiss
High affinity scFv-hapten pair as a tool for quantum dot labeling and tracking of single proteins in live cells.
Nano letters 2008;8(12):4618-23.
2008: You Korlann; Thomas Dertinger; Xavier Michalet; Shimon Weiss; Joerg Enderlein
Measuring diffusion with polarization-modulation dual-focus fluorescence correlation spectroscopy.
Optics express 2008;16(19):14609-16.
2008: Yun-Pei Chang; Fabien Pinaud; Joshua Antelman; Shimon Weiss
Tracking bio-molecules in live cells using quantum dots.
Journal of biophotonics 2008;1(4):287-98.
2008: Kambiz M Hamadani; Shimon Weiss
Nonequilibrium single molecule protein folding in a coaxial mixer.
Biophysical journal 2008;95(1):352-65.
2008: Younggyu Kim; Sam O Ho; Natalie Gassman; You Korlann; Elizabeth V Landorf; Frank R Collart; Shimon Weiss
Efficient site-specific labeling of proteins via cysteines.
Bioconjugate chemistry 2008;19(3):786-91.
2007: Meike L Schipper; Zhen Cheng; Sheen-Woo Lee; Laurent A Bentolila; Gopal Iyer; Jianghong Rao; Xiaoyuan Chen; Anna M Wu; Shimon Weiss; Sanjiv S Gambhir
microPET-based biodistribution of quantum dots in living mice.
Journal of nuclear medicine : official publication, Society of Nuclear Medicine 2007;48(9):1511-8.
2007: Devdoot S Majumdar; Irina Smirnova; Vladimir Kasho; Eyal Nir; Xiangxu Kong; Shimon Weiss; H Ronald Kaback
Single-molecule FRET reveals sugar-induced conformational dynamics in LacY.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12640-5.
2007: Sören Doose; Mike Heilemann; Xavier Michalet; Shimon Weiss; Achillefs N Kapanidis
Periodic acceptor excitation spectroscopy of single molecules.
European biophysics journal : EBJ 2007;36(6):669-74.
2007: Gopal Iyer; Fabien Pinaud; James M Tsay; Shimon Weiss
Solubilization of quantum dots with a recombinant peptide from Escherichia coli.
Small (Weinheim an der Bergstrasse, Germany) 2007;3(5):793-8.
2007: Xiangxu Kong; Eyal Nir; Kambiz Hamadani; Shimon Weiss
Photobleaching pathways in single-molecule FRET experiments.
Journal of the American Chemical Society 2007;129(15):4643-54.
2007: Nam Ki Lee; Achillefs N Kapanidis; Hye Ran Koh; You Korlann; Sam On Ho; Younggyu Kim; Natalie Gassman; Seong Keun Kim; Shimon Weiss
Three-color alternating-laser excitation of single molecules: monitoring multiple interactions and distances.
Biophysical journal 2007;92(1):303-12.
2006: Gopal Iyer; Fabien Pinaud; James M Tsay; Jack J Li; Laurent A Bentolila; Xavier Michalet; Shimon Weiss
Peptide coated quantum dots for biological applications.
IEEE transactions on nanobioscience 2006;5(4):231-8.
2006: Achillefs N Kapanidis; Emmanuel Margeat; Sam On Ho; Ekaterine Kortkhonjia; Shimon Weiss; Richard H. Ebright
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism.
Science (New York, N.Y.) 2006;314(5802):1144-7.
2006: Eyal Nir; Xavier Michalet; Kambiz M Hamadani; Ted A Laurence; Daniel Neuhauser; Yevgeniy Kovchegov; Shimon Weiss
Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments.
The journal of physical chemistry. B 2006;110(44):22103-24.
2006: Xavier Michalet; Shimon Weiss; Marcus Jäger
Single-molecule fluorescence studies of protein folding and conformational dynamics.
Chemical reviews 2006;106(5):1785-813.
2006: Xavier Michalet; Shimon Weiss
Using photon statistics to boost microscopy resolution.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(13):4797-8.
2006: Marcus Jäger; Eyal Nir; Shimon Weiss
Site-specific labeling of proteins for single-molecule FRET by combining chemical and enzymatic modification.
Protein science : a publication of the Protein Society 2006;15(3):640-6.
2006: Fabien Pinaud; Xavier Michalet; Laurent A Bentolila; James M Tsay; Sören Doose; Jack J Li; Gopal Iyer; Shimon Weiss
Advances in fluorescence imaging with quantum dot bio-probes.
Biomaterials 2006;27(9):1679-87.
2006: Emmanuel Margeat; Achillefs N Kapanidis; Philip Tinnefeld; You Wang; Jayanta Mukhopadhyay; Richard H. Ebright; Shimon Weiss
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.
Biophysical journal 2006;90(4):1419-31.
2006: James M Tsay; Sören Doose; Shimon Weiss
Rotational and translational diffusion of peptide-coated CdSe/CdS/ZnS nanorods studied by fluorescence correlation spectroscopy.
Journal of the American Chemical Society 2006;128(5):1639-47.
2005: Ted A Laurence; Xiangxu Kong; Marcus Jäger; Shimon Weiss
Probing structural heterogeneities and fluctuations of nucleic acids and denatured proteins.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(48):17348-53.
2005: Achillefs N Kapanidis; Emmanuel Margeat; Ted A Laurence; Sören Doose; Sam On Ho; Jayanta Mukhopadhyay; Ekaterine Kortkhonjia; Vladimir Mekler; Richard H. Ebright; Shimon Weiss
Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.
Molecular cell 2005;20(3):347-56.
2005: Marcus Jäger; Xavier Michalet; Shimon Weiss
Protein-protein interactions as a tool for site-specific labeling of proteins.
Protein science : a publication of the Protein Society 2005;14(8):2059-68.
2005: Achillefs N Kapanidis; Ted A Laurence; Nam Ki Lee; Emmanuel Margeat; Xiangxu Kong; Shimon Weiss
Alternating-laser excitation of single molecules.
Accounts of chemical research 2005;38(7):523-33.
2005: Sören Doose; James M Tsay; Fabien Pinaud; Shimon Weiss
Comparison of photophysical and colloidal properties of biocompatible semiconductor nanocrystals using fluorescence correlation spectroscopy.
Analytical chemistry 2005;77(7):2235-42.
2005: Nam Ki Lee; Achillefs N Kapanidis; You Wang; Xavier Michalet; Jayanta Mukhopadhyay; Richard H. Ebright; Shimon Weiss
Accurate FRET measurements within single diffusing biomolecules using alternating-laser excitation.
Biophysical journal 2005;88(4):2939-53.
2005: James M Tsay; Sören Doose; Fabien Pinaud; Shimon Weiss
Enhancing the photoluminescence of peptide-coated nanocrystals with shell composition and UV irradiation.
The journal of physical chemistry. B 2005;109(5):1669-74.
2005: Xavier Michalet; Fabien Pinaud; Laurent A Bentolila; James M Tsay; Sören Doose; Jack J Li; G Sundaresan; A M Wu; Sanjiv S Gambhir; Shimon Weiss
Quantum dots for live cells, in vivo imaging, and diagnostics.
Science (New York, N.Y.) 2005;307(5709):538-44.
2004: Achillefs N Kapanidis; Nam Ki Lee; Ted A Laurence; Sören Doose; Emmanuel Margeat; Shimon Weiss
Fluorescence-aided molecule sorting: analysis of structure and interactions by alternating-laser excitation of single molecules.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(24):8936-41.
2004: Fabien Pinaud; David King; Hsiao-Ping Moore; Shimon Weiss
Bioactivation and cell targeting of semiconductor CdSe/ZnS nanocrystals with phytochelatin-related peptides.
Journal of the American Chemical Society 2004;126(19):6115-23.
2004: James M Tsay; Malte Pflughoefft; Laurent A Bentolila; Shimon Weiss
Hybrid approach to the synthesis of highly luminescent CdTe/ZnS and CdHgTe/ZnS nanocrystals.
Journal of the American Chemical Society 2004;126(7):1926-7.
2003: Ted A Laurence; Shimon Weiss
Analytical chemistry. How to detect weak pairs.
Science (New York, N.Y.) 2003;299(5607):667-8.
2003: Xavier Michalet; Achillefs N Kapanidis; Ted A Laurence; Fabien Pinaud; Sören Doose; Malte Pflughoefft; Shimon Weiss
The power and prospects of fluorescence microscopies and spectroscopies.
Annual review of biophysics and biomolecular structure 2003;32():161-82.
2001: Xavier Michalet; TD Lacoste; Shimon Weiss
Ultrahigh-resolution colocalization of spectrally separable point-like fluorescent probes.
Methods (San Diego, Calif.) 2001;25(1):87-102.
2000: TD Lacoste; Xavier Michalet; Fabien Pinaud; DS Chemla; A. Paul Alivisatos; Shimon Weiss
Ultrahigh-resolution multicolor colocalization of single fluorescent probes.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(17):9461-6.
2000: Shimon Weiss
Shattering the diffraction limit of light: a revolution in fluorescence microscopy?
Proceedings of the National Academy of Sciences of the United States of America 2000;97(16):8747-9.
2000: Ashok A Deniz; Ted A Laurence; G S Beligere; M Dahan; A B Martin; DS Chemla; Philip E Dawson; Peter G Schultz; Shimon Weiss
Single-molecule protein folding: diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(10):5179-84.
1999: Ashok A Deniz; M Dahan; Jocelyn R Grunwell; T Ha; Ann Elise Faulhaber; DS Chemla; Shimon Weiss; Peter G Schultz
Single-pair fluorescence resonance energy transfer on freely diffusing molecules: observation of Förster distance dependence and subpopulations.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(7):3670-5.
1999: Shimon Weiss
Fluorescence spectroscopy of single biomolecules.
Science (New York, N.Y.) 1999;283(5408):1676-83.
1999: T Ha; A Y Ting; J Liang; W B Caldwell; Ashok A Deniz; DS Chemla; Peter G Schultz; Shimon Weiss
Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(3):893-8.
1998: M Bruchez; M Moronne; P Gin; Shimon Weiss; A. Paul Alivisatos
Semiconductor nanocrystals as fluorescent biological labels.
Science (New York, N.Y.) 1998;281(5385):2013-6.
1998: T Enderle; T Ha; DS Chemla; Shimon Weiss
Near-field fluorescence microscopy of cells.
Ultramicroscopy 1998;71(1-4):303-9.
1997: T Enderle; T Ha; D Frank Ogletree; DS Chemla; C Magowan; Shimon Weiss
Membrane specific mapping and colocalization of malarial and host skeletal proteins in the Plasmodium falciparum infected erythrocyte by dual-color near-field scanning optical microscopy.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(2):520-5.
1996: T Ha; T Enderle; D F Ogletree; DS Chemla; P R Selvin; Shimon Weiss
Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(13):6264-8.