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Sherman Weissman

Research Profile

Genes & Molecular Sequences

Genome, Human

Devices

Oligonucleotide Array Sequence Analysis

Physiology

Anatomy

Disorders

HIV Infections

Procedures

Living Beings

Chemicals & Drugs

Geographic Areas

United States

Concepts & Ideas

Databases, Genetic

Co-author Network

Publications

TOP 3
Ying Zhang; Sherman Weissman; Alexej Abyzov; Mark Gerstein; Fabian Grubert; Rajini Haraksingh; Alexander E Urban
Child development and structural variation in the human genome.
Alexej Abyzov; Nathaniel E Calixto; Katarzyna Chawarska; Anthony F Ferrandino; Mark Gerstein; Elena L Grigorenko; Michael Seamus Haney; Anita Huttner; Arif Kocabas; Jessica Mariani; Dean Palejev; Lior A Rosenberg Belmaker; Anna Szekely; Livia Tomasini; Alexander Eckehart Urban; Sherman Weissman; Michael Wilson; Ying Zhang; Flora M Vaccarino
Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells.
Jia Qian Wu; Zhijia Ye; Jiang Du; Mark Gerstein; Manoj Hariharan; Jin Lian; Vincent P Schulz; Montrell Seay; Minyi Shi; Michael P Snyder; David Tuck; Sherman Weissman
Tcf7 is an important regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line.

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All Publications

2013: Ying Zhang; Sherman Weissman; Alexej Abyzov; Mark Gerstein; Fabian Grubert; Rajini Haraksingh; Alexander E Urban
Child development and structural variation in the human genome.
Child development 2013;84(1):34-48.
2012: Alexej Abyzov; Nathaniel E Calixto; Katarzyna Chawarska; Anthony F Ferrandino; Mark Gerstein; Elena L Grigorenko; Michael Seamus Haney; Anita Huttner; Arif Kocabas; Jessica Mariani; Dean Palejev; Lior A Rosenberg Belmaker; Anna Szekely; Livia Tomasini; Alexander Eckehart Urban; Sherman Weissman; Michael Wilson; Ying Zhang; Flora M Vaccarino
Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells.
Nature 2012;492(7429):438-42.
2012: Jia Qian Wu; Zhijia Ye; Jiang Du; Mark Gerstein; Manoj Hariharan; Jin Lian; Vincent P Schulz; Montrell Seay; Minyi Shi; Michael P Snyder; David Tuck; Sherman Weissman
Tcf7 is an important regulator of the switch of self-renewal and differentiation in a multipotential hematopoietic cell line.
PLoS genetics 2012;8(3):e1002565.
2011: Flora M Vaccarino; Alexander Eckehart Urban; Hanna E Stevens; Anna Szekely; Alexej Abyzov; Elena L Grigorenko; Mark Gerstein; Sherman Weissman
Annual Research Review: The promise of stem cell research for neuropsychiatric disorders.
Journal of child psychology and psychiatry, and allied disciplines 2011;52(4):504-16.
2010: Jia Qian Wu; Lukas Habegger; Parinya Noisa; Anna Szekely; Caihong Qiu; Stephen Hutchison; Debasish Raha; Michael Egholm; Haifan Lin; Sherman Weissman; Wei Cui; Mark Gerstein; Michael Snyder
Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(11):5254-9.
2009: Elias Theodorou; George Dalembert; Christopher Heffelfinger; Eric White; Sherman Weissman; Lynn Corcoran; Michael Snyder
A high throughput embryonic stem cell screen identifies Oct-2 as a bifunctional regulator of neuronal differentiation.
Genes & development 2009;23(5):575-88.
2009: Michael Snyder; Sherman Weissman; Mark Gerstein
Personal phenotypes to go with personal genomes.
Molecular systems biology 2009;5():273.
2008: Philip M Kim; Hugo Y K Lam; Alexander Eckehart Urban; Jan O Korbel; Jason Affourtit; Fabian Grubert; Xueying Chen; Sherman Weissman; Michael Snyder; Mark Gerstein
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history.
Genome research 2008;18(12):1865-74.
2008: Mattia Pelizzola; Yasuo Koga; Alexander Eckehart Urban; Michael Krauthammer; Sherman Weissman; Ruth Halaban; Annette M Molinaro
MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment.
Genome research 2008;18(10):1652-9.
2008: Jan O Korbel; Philip M Kim; Xueying Chen; Alexander Eckehart Urban; Sherman Weissman; Michael Snyder; Mark Gerstein
The current excitement about copy-number variation: how it relates to gene duplications and protein families.
Current opinion in structural biology 2008;18(3):366-74.
2008: Jia Qian Wu; Jiang Du; Joel S Rozowsky; Zhengdong Zhang; Alexander E Urban; Ghia Euskirchen; Sherman Weissman; Mark Gerstein; Michael Snyder
Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.
Genome biology 2008;9(1):R3.
2007: Ghia Euskirchen; Joel S Rozowsky; Chia-Lin Wei; Wah Heng Lee; Zhengdong D Zhang; Stephen Hartman; Olof Emanuelsson; Viktor Stolc; Sherman Weissman; Mark Gerstein; Yijun Ruan; Michael Snyder
Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.
Genome research 2007;17(6):898-909.
2007: Zhengdong D Zhang; Alberto Paccanaro; Yutao Fu; Sherman Weissman; Zhiping Weng; Joseph Chang; Michael Snyder; Mark Gerstein
Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.
Genome research 2007;17(6):787-97.
2007: Joel S Rozowsky; Daniel Newburger; Fred Sayward; Jiaqian Wu; Greg Jordan; Jan O Korbel; Ugrappa Nagalakshmi; Jin Yang; Deyou Zheng; Roderic Guigó; Thomas Gingeras; Sherman Weissman; Perry Miller; Michael Snyder; Mark Gerstein
The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.
Genome research 2007;17(6):732-45.
2007: Mark Gerstein; Can Bruce; Joel S Rozowsky; Deyou Zheng; Du Jiang; Jan O Korbel; Olof Emanuelsson; Zhengdong D Zhang; Sherman Weissman; Michael Snyder
What is a gene, post-ENCODE? History and updated definition.
Genome research 2007;17(6):669-81.
2007: Olof Emanuelsson; Ugrappa Nagalakshmi; Deyou Zheng; Joel S Rozowsky; Alexander Eckehart Urban; Du Jiang; Zheng Lian; Viktor Stolc; Sherman Weissman; Michael Snyder; Mark Gerstein
Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.
Genome research 2007;17(6):886-97.
2006: Joel S Rozowsky; J Wu; Zheng Lian; Ugrappa Nagalakshmi; Jan O Korbel; Philipp Kapranov; Deyou Zheng; S Dyke; Peter E Newburger; Perry Miller; Thomas Gingeras; Sherman Weissman; Mark Gerstein; Michael Snyder
Novel transcribed regions in the human genome.
Cold Spring Harbor symposia on quantitative biology 2006;71():111-6.
2005: Stephen Hartman; Paul Bertone; Anjali K Nath; Thomas E Royce; Mark Gerstein; Sherman Weissman; Michael Snyder
Global changes in STAT target selection and transcription regulation upon interferon treatments.
Genes & development 2005;19(24):2953-68.
2005: Kristina Crothers; Tephany A Griffith; Kathleen A McGinnis; Maria C Rodriguez-Barradas; David A Leaf; Sherman Weissman; Cynthia L Gibert; Adeel A Butt; Amy C Justice
The impact of cigarette smoking on mortality, quality of life, and comorbid illness among HIV-positive veterans.
Journal of general internal medicine 2005;20(12):1142-5.
2005: Shawn L Fultz; Joseph L Goulet; Sherman Weissman; David Rimland; David A Leaf; Cynthia L Gibert; Maria C Rodriguez-Barradas; Amy C Justice
Differences between infectious diseases-certified physicians and general medicine-certified physicians in the level of comfort with providing primary care to patients.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2005;41(5):738-43.
2005: Thomas E Royce; Joel S Rozowsky; Paul Bertone; Manoj Pratim Samanta; Viktor Stolc; Sherman Weissman; Michael Snyder; Mark Gerstein
Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.
Trends in genetics : TIG 2005;21(8):466-75.
2004: Paul Bertone; Viktor Stolc; Thomas E Royce; Joel S Rozowsky; Alexander Eckehart Urban; Xiaowei Zhu; John L Rinn; Waraporn Tongprasit; Manoj Pratim Samanta; Sherman Weissman; Mark Gerstein; Michael Snyder
Global identification of human transcribed sequences with genome tiling arrays.
Science (New York, N.Y.) 2004;306(5705):2242-6.
2004: Eric J White; Olof Emanuelsson; d scalzo; Thomas E Royce; Steven Kosak; Edward J Oakeley; Sherman Weissman; Mark Gerstein; Mark Groudine; Michael Snyder; Dirk Schübeler
DNA replication-timing analysis of human chromosome 22 at high resolution and different developmental states.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(51):17771-6.
2004: Philip M Polgreen; Shawn L Fultz; A C Justice; Joseph H Wagner; Daniel J Diekema; L Rabeneck; Sherman Weissman; Jack T Stapleton
Association of hypocholesterolaemia with hepatitis C virus infection in HIV-infected people.
HIV medicine 2004;5(3):144-50.
2004: Ghia Euskirchen; Thomas E Royce; Paul Bertone; Rebecca Martone; John L Rinn; F Kenneth Nelson; Fred Sayward; Nicholas M Luscombe; Perry Miller; Mark Gerstein; Sherman Weissman; Michael Snyder
CREB binds to multiple loci on human chromosome 22.
Molecular and cellular biology 2004;24(9):3804-14.
2003: Rebecca Martone; Ghia Euskirchen; Paul Bertone; Stephen Hartman; Thomas E Royce; Nicholas M Luscombe; John L Rinn; F Kenneth Nelson; Perry Miller; Mark Gerstein; Sherman Weissman; Michael Snyder
Distribution of NF-kappaB-binding sites across human chromosome 22.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(21):12247-52.
2003: David S Zingmond; Amy M Kilbourne; Amy C Justice; Neil S Wenger; Maria C Rodriguez-Barradas; Linda Rabeneck; Dennis Taub; Sherman Weissman; Janet Briggs; Joseph Wagner; Susan Smola; Samuel A Bozzette
Differences in symptom expression in older HIV-positive patients: The Veterans Aging Cohort 3 Site Study and HIV Cost and Service Utilization Study experience.
Journal of acquired immune deficiency syndromes (1999) 2003;33 Suppl 2():S84-92.
2003: Shawn L Fultz; Amy C Justice; Adeel A Butt; Linda Rabeneck; Sherman Weissman; Maria C Rodriguez-Barradas
Testing, referral, and treatment patterns for hepatitis C virus coinfection in a cohort of veterans with human immunodeficiency virus infection.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2003;36(8):1039-46.
2003: John L Rinn; Ghia Euskirchen; Paul Bertone; Rebecca Martone; Nicholas M Luscombe; Stephen Hartman; Paul M Harrison; F Kenneth Nelson; Perry Miller; Mark Gerstein; Sherman Weissman; Michael Snyder
The transcriptional activity of human Chromosome 22.
Genes & development 2003;17(4):529-40.
2003: Zheng Lian; Ghia Euskirchen; John L Rinn; Rebecca Martone; Paul Bertone; Stephen Hartman; Thomas E Royce; K Nelson; Fred Sayward; Nicholas M Luscombe; J Yang; J L Li; Perry Miller; Alexander Eckehart Urban; Mark Gerstein; Sherman Weissman; Michael Snyder
Identification of novel functional elements in the human genome.
Cold Spring Harbor symposia on quantitative biology 2003;68():317-22.
2002: Amy M Kilbourne; Amy C Justice; Bruce L Rollman; Kathleen A McGinnis; Linda Rabeneck; Sherman Weissman; Susan Smola; Richard Schultz; Jeff Whittle; Maria C Rodriguez-Barradas
Clinical importance of HIV and depressive symptoms among veterans with HIV infection.
Journal of general internal medicine 2002;17(7):512-20.
2001: Joseph H Wagner; Amy C Justice; Margaret A Chesney; G Sinclair; Sherman Weissman; Maria C Rodriguez-Barradas
Patient- and provider-reported adherence: toward a clinically useful approach to measuring antiretroviral adherence.
Journal of clinical epidemiology 2001;54 Suppl 1():S91-8.
2001: Amy C Justice; W Holmes; A L Gifford; Linda Rabeneck; Robert Zackin; G Sinclair; Sherman Weissman; Judith L Neidig; C Marcus; Margaret A Chesney; S E Cohn; Albert W Wu
Development and validation of a self-completed HIV symptom index.
Journal of clinical epidemiology 2001;54 Suppl 1():S77-90.
2001: Susan Smola; Amy C Justice; J Wagner; Linda Rabeneck; Sherman Weissman; Maria C Rodriguez-Barradas
Veterans aging cohort three-site study (VACS 3): overview and description.
Journal of clinical epidemiology 2001;54 Suppl 1():S61-76.
2001: Amy M Kilbourne; Amy C Justice; Linda Rabeneck; Maria C Rodriguez-Barradas; Sherman Weissman
General medical and psychiatric comorbidity among HIV-infected veterans in the post-HAART era.
Journal of clinical epidemiology 2001;54 Suppl 1():S22-8.
2000: Y H Yang; Y H Chen; C Y Zhang; Manjunath Nimmakayalu; David C Ward; Sherman Weissman
Cloning and characterization of two mouse genes with homology to the yeast Sir2 gene.
Genomics 2000;69(3):355-69.