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Sherman Weissman

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Oligonucleotide Array Sequence Analysis

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TOP 3
Xinghua Pan; In-Hyun Park; Michael P Snyder; Yoshiaki Tanaka; Russell E Durrett; Ghia Euskirchen; Robert H LaMotte; Yumei Li; Chao Ma; Sadie L Marjani; Christopher E Mason; Haiying Zhu; Xiaoyuan Zi; Sherman M Weissman
Two methods for full-length RNA sequencing for low quantities of cells and single cells.
Peter M Rabinovich; Sherman M Weissman
Cell engineering with synthetic messenger RNA.
Maeve O'Huallachain; Sherman M Weissman; Michael P Snyder
The variable somatic genome.

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All Publications

2013: Xinghua Pan; In-Hyun Park; Michael P Snyder; Yoshiaki Tanaka; Russell E Durrett; Ghia Euskirchen; Robert H LaMotte; Yumei Li; Chao Ma; Sadie L Marjani; Christopher E Mason; Haiying Zhu; Xiaoyuan Zi; Sherman M Weissman
Two methods for full-length RNA sequencing for low quantities of cells and single cells.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(2):594-9.
2013: Peter M Rabinovich; Sherman M Weissman
Cell engineering with synthetic messenger RNA.
Methods in molecular biology (Clifton, N.J.) 2013;969():3-28.
2013: Maeve O'Huallachain; Sherman M Weissman; Michael P Snyder
The variable somatic genome.
Cell cycle (Georgetown, Tex.) 2013;12(1):5-6.
2012: Maeve O'Huallachain; Alexander Eckehart Urban; Sherman M Weissman; Konrad Karczewski; Michael P Snyder
Extensive genetic variation in somatic human tissues.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(44):18018-23.
2012: Alexandra E Charos; Debasish Raha; Brian D Reed; Anna M Szekely; Sherman M Weissman; Michael Snyder
A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells.
Genome research 2012;22(9):1668-79.
2011: Zhi-jia Ye; Erol Gulcicek; Kathryn Stone; Tukiet Lam; Vincent Schulz; Sherman M Weissman
Complex interactions in EML cell stimulation by stem cell factor and IL-3.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(12):4882-7.
2010: Subhradip Karmakar; Milind C Mahajan; Vincent Schulz; Gokul Boyapaty; Sherman M Weissman
A multiprotein complex necessary for both transcription and DNA replication at the β-globin locus.
The EMBO journal 2010;29(19):3260-71.
2010: Maya Kasowski; Fabian Grubert; Christopher Heffelfinger; Manoj Hariharan; Akwasi Asabere; Sebastian M Waszak; Lukas Habegger; Joel S Rozowsky; Minyi Shi; Alexander E Urban; Mi-Young Hong; Konrad Karczewski; Wolfgang Huber; Sherman M Weissman; Mark B Gerstein; Jan O Korbel; Michael Snyder
Variation in transcription factor binding among humans.
Science (New York, N.Y.) 2010;328(5975):232-5.
2010: Yukio Yasukochi; Osamu Maruyama; Milind C Mahajan; Carolyn Padden; Ghia M Euskirchen; Vincent Schulz; Hideki Hirakawa; Satoru Kuhara; Xing-Hua Pan; Peter E Newburger; Michael Snyder; Sherman M Weissman
X chromosome-wide analyses of genomic DNA methylation states and gene expression in male and female neutrophils.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(8):3704-9.
2009: Allon Canaan; Izhak Haviv; Alexander E Urban; Vincent P Schulz; Steve Hartman; Zhengdong Zhang; Dean Palejev; Albert B Deisseroth; Jill Lacy; Michael Snyder; Mark Gerstein; Sherman M Weissman
EBNA1 regulates cellular gene expression by binding cellular promoters.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(52):22421-6.
2009: Laurie A Steiner; Yelena Maksimova; Vincent Schulz; Clara Wong; Debasish Raha; Milind C Mahajan; Sherman M Weissman; Patrick G Gallagher
Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes.
Molecular and cellular biology 2009;29(20):5399-412.
2009: Milind C Mahajan; Subhradip Karmakar; Peter E Newburger; Diane S Krause; Sherman M Weissman
Dynamics of alpha-globin locus chromatin structure and gene expression during erythroid differentiation of human CD34(+) cells in culture.
Experimental hematology 2009;37(10):1143-1156.e3.
2009: Yasuo Koga; Mattia Pelizzola; Elaine Cheng; Michael Krauthammer; Mario Sznol; Stephan Ariyan; Deepak Narayan; Annette M Molinaro; Ruth Halaban; Sherman M Weissman
Genome-wide screen of promoter methylation identifies novel markers in melanoma.
Genome research 2009;19(8):1462-70.
2009: Xueqing Zhang; Zheng Lian; Carolyn Padden; Mark B Gerstein; Joel Rozowsky; Michael Snyder; Thomas Gingeras; Philipp Kapranov; Sherman M Weissman; Peter E Newburger
A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster.
Blood 2009;113(11):2526-34.
2009: Peter M Rabinovich; Marina E Komarovskaya; Stephen H Wrzesinski; Jonathan L Alderman; Tulin Budak-Alpdogan; Alexander Karpikov; Hongfen Guo; Richard A Flavell; Nai-Kong V Cheung; Sherman M Weissman; Erkut Bahceci
Chimeric receptor mRNA transfection as a tool to generate antineoplastic lymphocytes.
Human gene therapy 2009;20(1):51-61.
2008: Xinghua Pan; Alexander Eckehart Urban; Dean Palejev; Vincent Schulz; Fabian Grubert; Yiping Hu; Michael Snyder; Sherman M Weissman
A procedure for highly specific, sensitive, and unbiased whole-genome amplification.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(40):15499-504.
2008: Zheng Lian; Alexander Karpikov; Jin Lian; Milind C Mahajan; Stephen Hartman; Mark Gerstein; Michael Snyder; Sherman M Weissman
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.
Genome research 2008;18(8):1224-37.
2008: Brian D Reed; Alexandra E Charos; Anna M Szekely; Sherman M Weissman; Michael Snyder
Genome-wide occupancy of SREBP1 and its partners NFY and SP1 reveals novel functional roles and combinatorial regulation of distinct classes of genes.
PLoS genetics 2008;4(7):e1000133.
2007: Milind C Mahajan; Subhradip Karmakar; Sherman M Weissman
Control of beta globin genes.
Journal of cellular biochemistry 2007;102(4):801-10.
2007: Jan O Korbel; Alexander Eckehart Urban; Jason P Affourtit; Brian Godwin; Fabian Grubert; Jan Fredrik Simons; Philip M Kim; Dean Palejev; Nicholas Carriero; Lei Du; bruce taillon; Zhoutao Chen; Andrea Tanzer; A C Eugenia Saunders; jianxiang chi; Fengtang Yang; Nigel P Carter; Matthew E Hurles; Sherman M Weissman; Timothy T Harkins; Mark Gerstein; Michael Egholm; Michael Snyder
Paired-end mapping reveals extensive structural variation in the human genome.
Science (New York, N.Y.) 2007;318(5849):420-6.
2007: Jan O Korbel; Alexander Eckehart Urban; Fabian Grubert; Du Jiang; Thomas E Royce; Peter Starr; Guoneng Zhong; Beverly S Emanuel; Sherman M Weissman; Michael Snyder; Mark Gerstein
Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(24):10110-5.
2006: Yasuhiro Nakayama; Paul Stabach; Stephen E Maher; Milind C Mahajan; Peter Masiar; Cheng Liao; Xueqing Zhang; Zhi-jia Ye; David Tuck; Alfred L M Bothwell; Peter E Newburger; Sherman M Weissman
A limited number of genes are involved in the differentiation of germinal center B cells.
Journal of cellular biochemistry 2006;99(5):1308-25.
2006: Li-Ying Sung; Shaorong Gao; Hongmei Shen; Hui Yu; Yifang Song; Sadie L Smith; Ching-Chien Chang; Kimiko Inoue; Lynn Kuo; Jin Lian; Ao Li; X Cindy Tian; David Tuck; Sherman M Weissman; Xiangzhong Yang; Tao Cheng
Differentiated cells are more efficient than adult stem cells for cloning by somatic cell nuclear transfer.
Nature genetics 2006;38(11):1323-8.
2006: Peter M Rabinovich; Marina E Komarovskaya; Zhi-jia Ye; Chihaya Imai; Dario Campana; Erkut Bahceci; Sherman M Weissman
Synthetic messenger RNA as a tool for gene therapy.
Human gene therapy 2006;17(10):1027-35.
2006: Meng-Min Liu; Sherman M Weissman; Ling Tang
Identification of coding single nucleotide polymorphisms and mutations by combination of genome tiling arrays and enrichment/depletion of mismatch cDNAs.
Analytical biochemistry 2006;356(1):117-24.
2006: Allon Canaan; Xiaofeng Yu; Carmen J Booth; Jin Lian; Isaac Lazar; Serwa L Gamfi; Katrina Castille; Naohiko Kohya; Yasuhiro Nakayama; Yuan-Ching Liu; Elizabeth Eynon; Richard Flavell; Sherman M Weissman
FAT10/diubiquitin-like protein-deficient mice exhibit minimal phenotypic differences.
Molecular and cellular biology 2006;26(13):5180-9.
2006: Alexander Eckehart Urban; Jan O Korbel; Rebecca Selzer; Richmond Todd; April Hacker; George V Popescu; Joseph F Cubells; Roland Green; Beverly S Emanuel; Mark Gerstein; Sherman M Weissman; Michael Snyder
High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(12):4534-9.
2006: Milind C Mahajan; Sherman M Weissman
Multi-protein complexes at the beta-globin locus.
Briefings in functional genomics & proteomics 2006;5(1):62-5.
2005: Zhi-jia Ye; Yuval Kluger; Zheng Lian; Sherman M Weissman
Two types of precursor cells in a multipotential hematopoietic cell line.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(51):18461-6.
2005: Anna M Szekely; Franziska Bleichert; Astrid Nümann; Stephen Van Komen; Elisabeth Manasanch; Abdelhakim Ben Nasr; Allon Canaan; Sherman M Weissman
Werner protein protects nonproliferating cells from oxidative DNA damage.
Molecular and cellular biology 2005;25(23):10492-506.
2005: Milind C Mahajan; Geeta J Narlikar; Gokul Boyapaty; Robert E Kingston; Sherman M Weissman
Heterogeneous nuclear ribonucleoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin locus control region.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(42):15012-7.
2004: Yuval Kluger; Zheng Lian; Xueqing Zhang; Peter E Newburger; Sherman M Weissman
A panorama of lineage-specific transcription in hematopoiesis.
BioEssays : news and reviews in molecular, cellular and developmental biology 2004;26(12):1276-87.
2004: Yuval Kluger; David Tuck; Joseph T Chang; Yasuhiro Nakayama; Ranjana Poddar; Naohiko Kohya; Zheng Lian; Abdelhakim Ben Nasr; H Ruth Halaban; Diane S Krause; Xueqing Zhang; Peter E Newburger; Sherman M Weissman
Lineage specificity of gene expression patterns.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(17):6508-13.
2004: Xueqing Zhang; Yuval Kluger; Yasuhiro Nakayama; Ranjana Poddar; Constance Whitney; Adam DeTora; Sherman M Weissman; Peter E Newburger
Gene expression in mature neutrophils: early responses to inflammatory stimuli.
Journal of leukocyte biology 2004;75(2):358-72.
2003: Yasuhiro Tsukahara; Zheng Lian; Xueqing Zhang; Constance Whitney; Yuval Kluger; David Tuck; Shigeru Yamaga; Yasuhiro Nakayama; Sherman M Weissman; Peter E Newburger
Gene expression in human neutrophils during activation and priming by bacterial lipopolysaccharide.
Journal of cellular biochemistry 2003;89(4):848-61.
2003: Jean-Francois Lambert; Meng Liu; Gerald A Colvin; Mark S Dooner; Christina I Mcauliffe; Pamela S Becker; Bernard G Forget; Sherman M Weissman; Peter J Quesenberry
Marrow stem cells shift gene expression and engraftment phenotype with cell cycle transit.
The Journal of experimental medicine 2003;197(11):1563-72.
2002: Zheng Lian; Yuval Kluger; Dov S Greenbaum; David Tuck; Mark Gerstein; Nancy Berliner; Sherman M Weissman; Peter E Newburger
Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line.
Blood 2002;100(9):3209-20.
2002: Yinhua Yang; Yaohui Chen; Chunyu Zhang; Hai Huang; Sherman M Weissman
Nucleolar localization of hTERT protein is associated with telomerase function.
Experimental cell research 2002;277(2):201-9.
2002: Xinghua Pan; Sherman M Weissman
An approach for global scanning of single nucleotide variations.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(14):9346-51.
2002: M Okada; Shigeru Yamaga; S Yasuda; Sherman M Weissman; Y Yasukochi
Differential display of protein tyrosine kinase cDNAs from human fetal and adult brains.
BioTechniques 2002;32(4):856, 858, 860, 863-5.
2002: Christine E Horak; Milind C Mahajan; Nicholas M Luscombe; Mark Gerstein; Sherman M Weissman; Michael Snyder
GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(5):2924-9.
2002: Milind C Mahajan; Sherman M Weissman
DNA-dependent adenosine triphosphatase (helicaselike transcription factor) activates beta-globin transcription in K562 cells.
Blood 2002;99(1):348-56.
2001: Arumugham Raghunathan; R Sivakamasundari; J Wolenski; Ranjana Poddar; Sherman M Weissman
Functional analysis of B144/LST1: a gene in the tumor necrosis factor cluster that induces formation of long filopodia in eukaryotic cells.
Experimental cell research 2001;268(2):230-44.
2001: Jeffrey R Gruen; Sherman M Weissman
Human MHC class III and IV genes and disease associations.
Frontiers in bioscience : a journal and virtual library 2001;6():D960-72.
2001: Zheng Lian; Lin Wang; Shigeru Yamaga; W Bonds; Y Beazer-Barclay; Yuval Kluger; Mark Gerstein; Peter E Newburger; Nancy Berliner; Sherman M Weissman
Genomic and proteomic analysis of the myeloid differentiation program.
Blood 2001;98(3):513-24.
2001: Yasuhiro Nakayama; Sherman M Weissman; Alfred L M Bothwell
BXMAS1 identifies a cluster of homologous genes differentially expressed in B cells.
Biochemical and biophysical research communications 2001;285(3):830-7.
2001: Barbara A Degar; N Baskaran; Ruud Hulspas; Peter J Quesenberry; Sherman M Weissman; Bernard G Forget
The homeodomain gene Pitx2 is expressed in primitive hematopoietic stem/progenitor cells but not in their differentiated progeny.
Experimental hematology 2001;29(7):894-902.
2001: YV Subrahmanyam; Shigeru Yamaga; Y Prashar; H H Lee; N P Hoe; Yuval Kluger; Mark Gerstein; J D Goguen; Peter E Newburger; Sherman M Weissman
RNA expression patterns change dramatically in human neutrophils exposed to bacteria.
Blood 2001;97(8):2457-68.
2000: X Yu; Sherman M Weissman
Characterization of the promoter of human leukocyte-specific transcript 1. A small gene with a complex pattern of alternative transcripts.
The Journal of biological chemistry 2000;275(44):34597-608.
2000: A M Szekely; Y H Chen; C Zhang; Oshima Junko; Sherman M Weissman
Werner protein recruits DNA polymerase delta to the nucleolus.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(21):11365-70.
2000: R Sivakamasundari; Arumugham Raghunathan; C Y Zhang; R R Chowdhury; Sherman M Weissman
Expression and cellular localization of the protein encoded by the 1C7 gene: a recently described component of the MHC.
Immunogenetics 2000;51(8-9):723-32.
2000: Fuki M Hisama; Y H Chen; M Stephen Meyn; Oshima Junko; Sherman M Weissman
WRN or telomerase constructs reverse 4-nitroquinoline 1-oxide sensitivity in transformed Werner syndrome fibroblasts.
Cancer research 2000;60(9):2372-6.
2000: Peter E Newburger; YV Subrahmanyam; Sherman M Weissman
Global analysis of neutrophil gene expression.
Current opinion in hematology 2000;7(1):16-20.
1999: Y C Liu; J Pan; C Zhang; W Fan; Mark Collinge; Jeffrey R Bender; Sherman M Weissman
A MHC-encoded ubiquitin-like protein (FAT10) binds noncovalently to the spindle assembly checkpoint protein MAD2.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(8):4313-8.
1999: YV Subrahmanyam; N Baskaran; Peter E Newburger; Sherman M Weissman
A modified method for the display of 3'-end restriction fragments of cDNAs: molecular profiling of gene expression in neutrophils.
Methods in enzymology 1999;303():272-97.
1999: Y Prashar; Sherman M Weissman
READS: a method for display of 3'-end fragments of restriction enzyme-digested cDNAs for analysis of differential gene expression.
Methods in enzymology 1999;303():258-72.
1998: Fuki M Hisama; Oshima Junko; Chang-En Yu; Y H Fu; J Mulligan; Sherman M Weissman; Gerard D Schellenberg
Comparison of methods for identifying transcription units and transcription map of the Werner syndrome gene region.
Genomics 1998;52(3):352-7.
1998: V Sharma; Parvoneh Poorkaj-Navas; Fuki M Hisama; L Bonnycastle; Chang-En Yu; H Massa; Barbara J Trask; Kevin Clancy; D Patterson; Sherman M Weissman; Gerard D Schellenberg
An expression map from human chromosome 14q24.3.
Genomics 1998;47(2):314-8.
1997: Jeffrey R Gruen; Sherman M Weissman
Evolving views of the major histocompatibility complex.
Blood 1997;90(11):4252-65.