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Andrew Brass

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Harry Noyes; Andrew Brass; Isaiah Obara; Susan Anderson; Alan L Archibald; Dan G Bradley; Paul Fisher; Abigail Freeman; John Gibson; Michael Gicheru; Laurence Hall; Olivier Hanotte; Helen Hulme; Declan McKeever; Caitriona Murray; Sung Jung Oh; Catriona Tate; Ken Smith; Miika Tapio; John Wambugu; Diana J Williams; Morris Agaba; Stephen J Kemp
Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection.
Harry Noyes; Morris Agaba; Susan Anderson; Alan L Archibald; Andrew Brass; John Gibson; Laurence Hall; Helen Hulme; Sung Jong Oh; Stephen Kemp
Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background.
Birgit Rathkolb; Harry Noyes; Andrew Brass; Paul Dark; Helmut Fuchs; Valérie Gailus-Durner; John Gibson; Martin Hrabé De Angelis; Moses Ogugo; Fuad A Iraqi; Stephen J Kemp; Jan Naessens; Mathew E Pope; Eckhard Wolf; Morris Agaba
Clinical chemistry of congenic mice with quantitative trait loci for predicted responses to Trypanosoma congolense infection.

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All Publications

2011: Harry Noyes; Andrew Brass; Isaiah Obara; Susan Anderson; Alan L Archibald; Dan G Bradley; Paul Fisher; Abigail Freeman; John Gibson; Michael Gicheru; Laurence Hall; Olivier Hanotte; Helen Hulme; Declan McKeever; Caitriona Murray; Sung Jung Oh; Catriona Tate; Ken Smith; Miika Tapio; John Wambugu; Diana J Williams; Morris Agaba; Stephen J Kemp
Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(22):9304-9.
2010: Harry Noyes; Morris Agaba; Susan Anderson; Alan L Archibald; Andrew Brass; John Gibson; Laurence Hall; Helen Hulme; Sung Jong Oh; Stephen Kemp
Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background.
BMC genomics 2010;11():361.
2009: Birgit Rathkolb; Harry Noyes; Andrew Brass; Paul Dark; Helmut Fuchs; Valérie Gailus-Durner; John Gibson; Martin Hrabé De Angelis; Moses Ogugo; Fuad A Iraqi; Stephen J Kemp; Jan Naessens; Mathew E Pope; Eckhard Wolf; Morris Agaba
Clinical chemistry of congenic mice with quantitative trait loci for predicted responses to Trypanosoma congolense infection.
Infection and immunity 2009;77(9):3948-57.
2009: Weizhong Li; Andrew Y Gracey; Luciane Vieira Mello; Andrew Brass; Andrew R Cossins
ExprAlign--the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles.
BMC genomics 2009;10():560.
2009: Paul Fisher; Harry Noyes; Stephen Kemp; Robert Stevens; Andrew Brass
A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.
Methods in molecular biology (Clifton, N.J.) 2009;573():329-45.
2008: Catriona Rennie; Harry Noyes; Stephen J Kemp; Helen Hulme; Andrew Brass; David C Hoyle
Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays.
BMC genomics 2008;9():317.
2007: Paul Fisher; Cornelia Hedeler; Katy Wolstencroft; Helen Hulme; Harry Noyes; Stephen Kemp; Robert Stevens; Andrew Brass
A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis.
Nucleic acids research 2007;35(16):5625-33.
2006: S Kierstein; H Noyes; Jan Naessens; Y Nakamura; C Pritchard; J Gibson; S Kemp; Andrew Brass
Gene expression profiling in a mouse model for African trypanosomiasis.
Genes and immunity 2006;7(8):667-79.
2006: Katy Wolstencroft; Phillip Lord; Lydia Tabernero; Andrew Brass; Robert Stevens
Protein classification using ontology classification.
Bioinformatics (Oxford, England) 2006;22(14):e530-8.
2006: Jane Fraser; Luciane Vieira de Mello; Deborah Ward; Huw H Rees; Daryl R Williams; Yongxiang Fang; Yongchang Fang; Andrew Brass; Andrew Y Gracey; Andrew R Cossins
Hypoxia-inducible myoglobin expression in nonmuscle tissues.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(8):2977-81.
2006: Norman Morrison; A Joseph Wood; David Hancock; Shah Sonia; Luke Hakes; Tanya Gray; Bela Tiwari; Peter Kille; Andrew R Cossins; Matthew Hegarty; Michael Allen; William H Wilson; Peter Olive; Kim Last; Cas Kramer; Thierry Bailhache; Jonathan Reeves; Denise Pallett; Justin Warne; Karim Nashar; Helen Parkinson; Susanna-Assunta Sansone; Philippe Rocca-Serra; Robert Stevens; Jason Snape; Andrew Brass; Dawn Field
Annotation of environmental OMICS data: application to the transcriptomics domain.
Omics : a journal of integrative biology 2006;10(2):172-8.
2005: R Datta; Matthew deschoolmeester; Cornelia Hedeler; Norman W Paton; Andrew Brass; Kathryn J Else
Identification of novel genes in intestinal tissue that are regulated after infection with an intestinal nematode parasite.
Infection and immunity 2005;73(7):4025-33.
2005: Katy Wolstencroft; R McEntire; Robert Stevens; Lydia Tabernero; Andrew Brass
Constructing ontology-driven protein family databases.
Bioinformatics (Oxford, England) 2005;21(8):1685-92.
2005: Katy Wolstencroft; Robert Stevens; Lydia Tabernero; Andrew Brass
PhosphaBase: an ontology-driven database resource for protein phosphatases.
Proteins 2005;58(2):290-4.
2005: David Hancock; Michael Wilson; Giles Velarde; Norman Morrison; Andrew Hayes; Helen Hulme; A Joseph Wood; Karim Nashar; Douglas B Kell; Andrew Brass
maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.
BMC bioinformatics 2005;6():264.
2005: Richard Bishop; Trushar Shah; Roger Pelle; David C Hoyle; Terry Pearson; Lee Haines; Andrew Brass; Helen Hulme; Simon P Graham; Evans L N Taracha; Simon Kanga; Charles Lu; Brian Hass; Jennifer Wortman; Owen R White; Malcolm J Gardner; Vishvanath Nene; Etienne de Villiers
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage.
Nucleic acids research 2005;33(17):5503-11.
2004: Andrew Y Gracey; E Jane Fraser; Weizhong Li; Yongxiang Fang; Ruth R Taylor; Jane Rogers; Andrew Brass; Andrew R Cossins
Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(48):16970-5.
2004: Kevin L Garwood; Christopher Taylor; Kai J Runte; Andrew Brass; Stephen G Oliver; Norman W Paton
Pedro: a configurable data entry tool for XML.
Bioinformatics (Oxford, England) 2004;20(15):2463-5.
2004: Timothy A Hinsley; Pamela Cunliffe; Hannah J Tipney; Andrew Brass; May Tassabehji
Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome.
Protein science : a publication of the Protein Society 2004;13(10):2588-99.
2004: Kevin L Garwood; Thomas McLaughlin; Christopher Garwood; Scott Joens; Norman Morrison; Christopher Taylor; Kathleen Carroll; Caroline Evans; Anthony D Whetton; Sarah Hart; David Stead; Zhikang Yin; Alistair J P Brown; Andy Hesketh; Keith F Chater; Lena Hansson; Muriel Mewissen; Peter Ghazal; Julie Howard; Kathryn S Lilley; Simon J Gaskell; Andrew Brass; Simon Hubbard; Stephen G Oliver; Norman W Paton
PEDRo: a database for storing, searching and disseminating experimental proteomics data.
BMC genomics 2004;5():68.
2004: Robert D Stevens; Hannah J Tipney; Christopher J Wroe; Tom Oinn; M Senger; Phillip Lord; Carole Goble; Andrew Brass; May Tassabehji
Exploring Williams-Beuren syndrome using myGrid.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i303-10.
2004: Hannah J Tipney; Timothy A Hinsley; Andrew Brass; Kay Metcalfe; Dian Donnai; May Tassabehji
Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome.
European journal of human genetics : EJHG 2004;12(7):551-60.
2003: Yongxiang Fang; Andrew Brass; David C Hoyle; Andrew Hayes; Abdulla Masood Bashein; Stephen G Oliver; David Waddington; Magnus Rattray
A model-based analysis of microarray experimental error and normalisation.
Nucleic acids research 2003;31(16):e96.
2003: Phillip Lord; Robert D Stevens; Andrew Brass; Carole Goble
Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation.
Bioinformatics (Oxford, England) 2003;19(10):1275-83.
2003: Christopher Taylor; Norman W Paton; Kevin L Garwood; Paul D Kirby; David Stead; Zhikang Yin; Eric Deutsch; Laura Selway; Janet Walker; Isabel Riba; shabaz mohammed; Michael J Deery; Julie A Howard; Tom P J Dunkley; Ruedi Aebersold; Douglas B Kell; Kathryn S Lilley; Peter Roepstorff; John R Yates; Andrew Brass; Alistair J P Brown; Phillip Cash; Simon J Gaskell; Simon Hubbard; Stephen G Oliver
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Nature biotechnology 2003;21(3):247-54.
2003: Phillip Lord; Robert D Stevens; Andrew Brass; Carole Goble
Semantic similarity measures as tools for exploring the gene ontology.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2003;():601-12.
2002: David C Hoyle; Magnus Rattray; Ray Jupp; Andrew Brass
Making sense of microarray data distributions.
Bioinformatics (Oxford, England) 2002;18(4):576-84.
2001: Robert Stevens; Carole Goble; P Baker; Andrew Brass
A classification of tasks in bioinformatics.
Bioinformatics (Oxford, England) 2001;17(2):180-8.
2001: Martin H Brutsche; IC Brutsche; P Wood; Andrew Brass; N Morrison; M Rattay; Nesrin Mogulkoc; NR Simler; M Craven; Adnan Custovic; Jim J Egan; Ashley Woodcock
Apoptosis signals in atopy and asthma measured with cDNA arrays.
Clinical and experimental immunology 2001;123(2):181-7.
2000: Norman W Paton; S A Khan; Andrew Hayes; F Moussouni; Andrew Brass; K Eilbeck; Carole Goble; Simon Hubbard; Stephen G Oliver
Conceptual modelling of genomic information.
Bioinformatics (Oxford, England) 2000;16(6):548-57.
2000: Robert Stevens; P Baker; Sean Bechhofer; G Ng; A Jacoby; Norman W Paton; Carole Goble; Andrew Brass
TAMBIS: transparent access to multiple bioinformatics information sources.
Bioinformatics (Oxford, England) 2000;16(2):184-5.
1999: David W Ray; C S Suen; Andrew Brass; Joanne Soden; Anne White
Structure/function of the human glucocorticoid receptor: tyrosine 735 is important for transactivation.
Molecular endocrinology (Baltimore, Md.) 1999;13(11):1855-63.
1999: PG Baker; Carole Goble; Sean Bechhofer; Norman W Paton; Robert Stevens; Andrew Brass
An ontology for bioinformatics applications.
Bioinformatics (Oxford, England) 1999;15(6):510-20.
1999: D S Marks; C A Gregory; G A Wallis; Andrew Brass; Karl Kadler; Raymond P Boot-Handford
Metaphyseal chondrodysplasia type Schmid mutations are predicted to occur in two distinct three-dimensional clusters within type X collagen NC1 domains that retain the ability to trimerize.
The Journal of biological chemistry 1999;274(6):3632-41.
1999: J Sheehan; Andrew Brass; Andrew Almond
The conformations of hyaluronan in aqueous solution: comparison of theory and experiment.
Biochemical Society transactions 1999;27(2):121-4.
1999: C Miller; J Gurd; Andrew Brass
A RAPID algorithm for sequence database comparisons: application to the identification of vector contamination in the EMBL databases.
Bioinformatics (Oxford, England) 1999;15(2):111-21.
1999: K Eilbeck; Andrew Brass; Norman Paton; C Hodgman
INTERACT: an object oriented protein-protein interaction database.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1999;():87-94.
1998: Andrew Almond; Andrew Brass; John K Sheehan
Deducing polymeric structure from aqueous molecular dynamics simulations of oligosaccharides: predictions from simulations of hyaluronan tetrasaccharides compared with hydrodynamic and X-ray fibre diffraction data.
Journal of molecular biology 1998;284(5):1425-37.
1998: Andrew Almond; Andrew Brass; John K Sheehan
Dynamic exchange between stabilized conformations predicted for hyaluronan tetrasaccharides: comparison of molecular dynamics simulations with available NMR data.
Glycobiology 1998;8(10):973-80.
1998: PG Baker; Andrew Brass
Recent developments in biological sequence databases.
Current opinion in biotechnology 1998;9(1):54-8.
1998: PG Baker; Andrew Brass; Sean Bechhofer; Carole Goble; Norman Paton; Robert Stevens
TAMBIS--Transparent Access to Multiple Bioinformatics Information Sources.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1998;6():25-34.
1998: I Anderson; Andrew Brass
Searching DNA databases for similarities to DNA sequences: when is a match significant?
Bioinformatics (Oxford, England) 1998;14(4):349-56.
1997: Andrew Almond; John K Sheehan; Andrew Brass
Molecular dynamics simulations of the two disaccharides of hyaluronan in aqueous solution.
Glycobiology 1997;7(5):597-604.
1997: John Parkinson; Andrew Brass; G Canova; Y Brechet
The mechanical properties of simulated collagen fibrils.
Journal of biomechanics 1997;30(6):549-54.
1997: Jill Dixon; S J Edwards; I Anderson; Andrew Brass; Peter J Scambler; Michael J Dixon
Identification of the complete coding sequence and genomic organization of the Treacher Collins syndrome gene.
Genome research 1997;7(3):223-34.
1995: Danny S Tuckwell; Martin J Humphries; Andrew Brass
Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments.
Computer applications in the biosciences : CABIOS 1995;11(6):627-32.
1995: Andrew Brass; A Fiszer; M Clamp
Lattice models of protein folding.
Biochemical Society transactions 1995;23(4):715-9.
1995: John Parkinson; Karl Kadler; Andrew Brass
Simple physical model of collagen fibrillogenesis based on diffusion limited aggregation.
Journal of molecular biology 1995;247(4):823-31.
1994: Danny S Tuckwell; Martin J Humphries; Andrew Brass
A secondary structure model of the integrin alpha subunit N-terminal domain based on analysis of multiple alignments.
Cell adhesion and communication 1994;2(5):385-402.
1994: John M Clements; Peter Newham; M Shepherd; R Gilbert; T J Dudgeon; L A Needham; R M Edwards; L Berry; Andrew Brass; Martin J Humphries
Identification of a key integrin-binding sequence in VCAM-1 homologous to the LDV active site in fibronectin.
Journal of cell science 1994;107 ( Pt 8)():2127-35.
1993: Peter Newham; Danny S Tuckwell; Andrew Brass; Martin J Humphries
Mechanism of integrin alpha 4 beta 1-VCAM-1 interaction.
Biochemical Society transactions 1993;21(4):339S.
1992: S J Lightfoot; David F Holmes; Andrew Brass; Michael E Grant; Peter H Byers; Karl Kadler
Type I procollagens containing substitutions of aspartate, arginine, and cysteine for glycine in the pro alpha 1 (I) chain are cleaved slowly by N-proteinase, but only the cysteine substitution introduces a kink in the molecule.
The Journal of biological chemistry 1992;267(35):25521-8.
1992: Danny S Tuckwell; Andrew Brass; Martin J Humphries
Homology modelling of integrin EF-hands. Evidence for widespread use of a conserved cation-binding site.
The Biochemical journal 1992;285 ( Pt 1)():325-31.
1992: Andrew Brass; Karl Kadler; J T Thomas; Michael E Grant; Raymond P Boot-Handford
The fibrillar collagens, collagen VIII, collagen X and the C1q complement proteins share a similar domain in their C-terminal non-collagenous regions.
FEBS letters 1992;303(2-3):126-8.
1991: P G Baker; J S Thompson; Andrew Brass
Computer simulations of the effect of glycosylation on the conformational freedom of peptides.
Biochemical Society transactions 1991;19(4):405S.
1991: Andrew Brass; Karl Kadler; J T Thomas; Michael E Grant; Raymond P Boot-Handford
The aromatic zipper: a model for the initial trimerization event in collagen folding.
Biochemical Society transactions 1991;19(4):365S.
1991: J E Scott; C Cummings; Andrew Brass; Y Chen
Secondary and tertiary structures of hyaluronan in aqueous solution, investigated by rotary shadowing-electron microscopy and computer simulation. Hyaluronan is a very efficient network-forming polymer.
The Biochemical journal 1991;274 ( Pt 3)():699-705.