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Sarah Wheelan

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Publications

TOP 3
Wen-Chih Cheng; Tami J Kingsbury; Sarah J Wheelan; Curt I Civin
A simple high-throughput technology enables gain-of-function screening of human microRNAs.
Szilvia Solyom; Kyle R Upton; Sarah J Wheelan; David A Largaespada; Heather H Nelson; Eric P Rahrmann; Ruchi Shukla; David F Sigmon; Michael B Burns; Alex Casella; Tara Doucet; Bracha Erlanger; Adam D Ewing; Geoffrey J Faulkner; Reuben S Harris; Haig Kazazian
Extensive somatic L1 retrotransposition in colorectal tumors.
Samarjit Das; Marcella Ferlito; Karen Fox-Talbot; Oliver A Kent; Delong Liu; Elizabeth Murphy; Nalini Raghavachari; Richard Wang; Sarah J Wheelan; Yanqin Yang; CHARLES STEENBERGEN
Nuclear miRNA regulates the mitochondrial genome in the heart.

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All Publications

2013: Wen-Chih Cheng; Tami J Kingsbury; Sarah J Wheelan; Curt I Civin
A simple high-throughput technology enables gain-of-function screening of human microRNAs.
BioTechniques 2013;54(2):77-86.
2012: Szilvia Solyom; Kyle R Upton; Sarah J Wheelan; David A Largaespada; Heather H Nelson; Eric P Rahrmann; Ruchi Shukla; David F Sigmon; Michael B Burns; Alex Casella; Tara Doucet; Bracha Erlanger; Adam D Ewing; Geoffrey J Faulkner; Reuben S Harris; Haig Kazazian
Extensive somatic L1 retrotransposition in colorectal tumors.
Genome research 2012;22(12):2328-38.
2012: Samarjit Das; Marcella Ferlito; Karen Fox-Talbot; Oliver A Kent; Delong Liu; Elizabeth Murphy; Nalini Raghavachari; Richard Wang; Sarah J Wheelan; Yanqin Yang; CHARLES STEENBERGEN
Nuclear miRNA regulates the mitochondrial genome in the heart.
Circulation research 2012;110(12):1596-603.
2012: Kathryn A O'Donnell; Bert W O'Malley; Erin L Reineke; Christina T Schrum; Daekwan Seo; Kevin A T Silverstein; Michael Torbenson; Sarah J Wheelan; Wei Rose Xie; Brian York; Danhua Fan; Vincent W Keng; David Largaespada; Loris Mularoni; Jef Boeke
A Sleeping Beauty mutagenesis screen reveals a tumor suppressor role for Ncoa2/Src-2 in liver cancer.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(21):E1377-86.
2012: Alexander Favorov; Vsevolod J Makeev; Yulia Medvedeva; Andrey A Mironov; Loris Mularoni; Leslie Cope; Sarah J Wheelan
Exploring massive, genome scale datasets with the GenometriCorr package.
PLoS computational biology 2012;8(5):e1002529.
2012: Loris Mularoni; Sarah J Wheelan; Yulian Zhou; Tyson Bowen; Sunil Gangadharan; Jef Boeke
Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots.
Genome research 2012;22(4):693-703.
2011: Nuttara Jamonnak; Paul Schaughency; Sarah J Wheelan; Tyler J Creamer; Miranda M Darby; Jeffry L Corden
Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing.
RNA (New York, N.Y.) 2011;17(11):2011-25.
2011: Tyler J Creamer; Miranda M Darby; Haiping Hao; Nuttara Jamonnak; Paul Schaughency; Sarah J Wheelan; Jeffry L Corden
Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1.
PLoS genetics 2011;7(10):e1002329.
2011: Nara L M Sobreira; George H Thomas; Michael Walsh; Sarah J Wheelan; Elizabeth Wohler; Veena Gnanakkan; Ada Hamosh; Julie E Hoover-Fong; Beth Marosy; David Valle
Characterization of complex chromosomal rearrangements by targeted capture and next-generation sequencing.
Genome research 2011;21(10):1720-7.
2011: SunHwa Hong; Alyza M Skaist; Sarah J Wheelan; Alan D Friedman
AP-1 protein induction during monopoiesis favors C/EBP: AP-1 heterodimers over C/EBP homodimerization and stimulates FosB transcription.
Journal of leukocyte biology 2011;90(4):643-51.
2011: Svitlana Tyekucheva; Sarah J Wheelan; Robert H Yolken; Melissa Kramer; W Richard McCombie; Jennifer Parla; Sarven Sabunciyan
Establishing the baseline level of repetitive element expression in the human cortex.
BMC genomics 2011;12():495.
2011: Tejasvi S Niranjan; Margaret A Taub; Abby Adamczyk; Héctor Corrada Bravo; Rafael A Irizarry; Sarah J Wheelan; Tao Wang
Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis.
Genome biology 2011;12(9):R93.
2011: Suchetha Murthy; Gary S Hayward; Sarah J Wheelan; Michael S Forman; JIN HYUN AHN; Robert F Pass; RAVIT BOGER
Detection of a single identical cytomegalovirus (CMV) strain in recently seroconverted young women.
PloS one 2011;6(1):e15949.
2010: Sunil Gangadharan; Loris Mularoni; Jennifer Fain-Thornton; Sarah J Wheelan; Nancy Craig
DNA transposon Hermes inserts into DNA in nucleosome-free regions in vivo.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(51):21966-72.
2010: S Morisot; ALAN WAYNE; O Bohana-Kashtan; I M Kaplan; Christopher D Gocke; R Hildreth; M Stetler-Stevenson; R L Walker; S Davis; P S Meltzer; Sarah J Wheelan; Patrick Brown; Richard J Jones; L D Shultz; Curt I Civin
High frequencies of leukemia stem cells in poor-outcome childhood precursor-B acute lymphoblastic leukemias.
Leukemia 2010;24(11):1859-66.
2010: Cheng Ran Lisa Huang; Anna M Schneider; Yunqi Lu; Tejasvi Niranjan; Peilin Shen; Matoya A Robinson; Jared P Steranka; David Valle; Curt I Civin; Tao Wang; Sarah J Wheelan; Hongkai Ji; Jef Boeke; Kathleen HELEN Burns
Mobile interspersed repeats are major structural variants in the human genome.
Cell 2010;141(7):1171-82.
2010: Ming-Tseh Lin; LH Tseng; Hirohiko Kamiyama; Mihoko Kamiyama; Phillip Lim; Manuel Hidalgo; Sarah J Wheelan; James R Eshleman
Quantifying the relative amount of mouse and human DNA in cancer xenografts using species-specific variation in gene length.
BioTechniques 2010;48(3):211-8.
2008: Sarah J Wheelan; Francisco Martínez-Murillo; Jef Boeke
The incredible shrinking world of DNA microarrays.
Molecular bioSystems 2008;4(7):726-32.
2006: Wenfeng An; Jeffrey S Han; Sarah J Wheelan; Edward S Davis; Candice E Coombes; Ping Ye; Christina Triplett; Jef Boeke
Active retrotransposition by a synthetic L1 element in mice.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(49):18662-7.
2006: Sarah J Wheelan; Lisa Z Scheifele; Francisco Martínez-Murillo; Rafael A Irizarry; Jef Boeke
Transposon insertion site profiling chip (TIP-chip).
Proceedings of the National Academy of Sciences of the United States of America 2006;103(47):17632-7.
2006: Sarah J Wheelan; Francisco Martínez-Murillo; Rafael A Irizarry; Jef Boeke
Stacking the deck: double-tiled DNA microarrays.
Nature methods 2006;3(11):903-7.
2006: Sarah M Richardson; Sarah J Wheelan; Robert M Yarrington; Jef Boeke
GeneDesign: rapid, automated design of multikilobase synthetic genes.
Genome research 2006;16(4):550-6.
2005: Sarah J Wheelan; Yasunori Aizawa; Jeffrey S Han; Jef Boeke
Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution.
Genome research 2005;15(8):1073-8.
2003: Gabor T Marth; Greg Schuler; Raymond Yeh; Ruth Davenport; Richa Agarwala; Deanna Church; Sarah J Wheelan; Jonathan Baker; Ming Ward; Michael Kholodov; Lon Phan; Eva Czabarka; Janos Murvai; David Cutler; Stephen Wooding; Alan Rogers; Aravinda Chakravarti; Henry Harpending; Pui-Yan Kwok; Stephen T Sherry
Sequence variations in the public human genome data reflect a bottlenecked population history.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(1):376-81.
2001: Sarah J Wheelan; Deanna M Church; James Ostell
Spidey: a tool for mRNA-to-genomic alignments.
Genome research 2001;11(11):1952-7.
2001: James Ostell; Sarah J Wheelan; JA Kans
The NCBI data model.
Methods of biochemical analysis 2001;43():19-43.
2000: Patrick Onyango; W Miller; Jessica A Lehoczky; Cheuk T. Leung; Bruce Birren; Sarah J Wheelan; Ken Dewar; Andrew P Feinberg
Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain.
Genome research 2000;10(11):1697-710.
2000: Sarah J Wheelan; Aron Marchler-Bauer; Stephen H Bryant
Domain size distributions can predict domain boundaries.
Bioinformatics (Oxford, England) 2000;16(7):613-8.
2000: Sarah J Wheelan; Wojciech Makalowski
Genome research: the second decade. A report on the XI Cold Spring Harbor Laboratory Meeting on Genome Mapping and Sequencing, May 13-17, 1998, Cold Spring Harbor, NY.
Computers & chemistry 2000;24(1):125-7.
1999: Sarah J Wheelan; Mark S Boguski; L Duret; W Makałowski
Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans.
Gene 1999;238(1):163-70.
1998: Sarah J Wheelan; Mark S Boguski
Late-night thoughts on the sequence annotation problem.
Genome research 1998;8(3):168-9.