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Forest White

Research Profile

Physiology

Phenomena

Phosphorylation

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Proteomics

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Chemicals & Drugs

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Amino Acid Sequences

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Publications

TOP 3
Hannah Johnson; Jann N. Sarkaria; Mark A Schroeder; Bryan D Bryson; Amanda M Del Rosario; Forest M White
Molecular characterization of EGFR and EGFRvIII signaling networks in human glioblastoma tumor xenografts.
Georg E Winter; Peter Valent; Forest M White; Keiryn Bennett; Martin Bilban; Florian P Breitwieser; Scott M Carlson; Jacques Colinge; Karoline V Gleixner; Florian Grebien; Manuela Gridling; André C Müller; Uwe Rix; Giulio Superti-Furga
Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML.
Kristen M Naegle; Forest M White; Douglas A Lauffenburger; Michael B Yaffe
Robust co-regulation of tyrosine phosphorylation sites on proteins reveals novel protein interactions.

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All Publications

2012: Hannah Johnson; Jann N. Sarkaria; Mark A Schroeder; Bryan D Bryson; Amanda M Del Rosario; Forest M White
Molecular characterization of EGFR and EGFRvIII signaling networks in human glioblastoma tumor xenografts.
Molecular & cellular proteomics : MCP 2012;11(12):1724-40.
2012: Georg E Winter; Peter Valent; Forest M White; Keiryn Bennett; Martin Bilban; Florian P Breitwieser; Scott M Carlson; Jacques Colinge; Karoline V Gleixner; Florian Grebien; Manuela Gridling; André C Müller; Uwe Rix; Giulio Superti-Furga
Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML.
Nature chemical biology 2012;8(11):905-12.
2012: Kristen M Naegle; Forest M White; Douglas A Lauffenburger; Michael B Yaffe
Robust co-regulation of tyrosine phosphorylation sites on proteins reveals novel protein interactions.
Molecular bioSystems 2012;8(10):2771-82.
2012: Hannah Johnson; Forest M White
Toward quantitative phosphotyrosine profiling in vivo.
Seminars in cell & developmental biology 2012;23(8):854-62.
2012: Scott M Carlson; Forest M White
Labeling and identification of direct kinase substrates.
Science signaling 2012;5(227):pl3.
2012: Scott M Carlson; Forest M White
Expanding applications of chemical genetics in signal transduction.
Cell cycle (Georgetown, Tex.) 2012;11(10):1903-9.
2012: Benjamin J Hackel; Jason R Neil; Forest M White; K Dane Wittrup
Epidermal growth factor receptor downregulation by small heterodimeric binding proteins.
Protein engineering, design & selection : PEDS 2012;25(2):47-57.
2012: Bryan D Bryson; Forest M White
Signaling for death: tyrosine phosphorylation in the response to glucose deprivation.
Molecular systems biology 2012;8():591.
2011: Kristen M Naegle; Roy E Welsch; Forest M White; Michael B Yaffe; Douglas A Lauffenburger
MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets.
PLoS computational biology 2011;7(7):e1002119.
2011: Hui Liu; Shao-En Ong; Kwabena Badu-Nkansah; Jeffrey Schindler; Forest M White; Richard O Hynes
CUB-domain-containing protein 1 (CDCP1) activates Src to promote melanoma metastasis.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(4):1379-84.
2011: Scott M Carlson; Forest M White
Using small molecules and chemical genetics to interrogate signaling networks.
ACS chemical biology 2011;6(1):75-85.
2011: Scott M Carlson; Candace R Chouinard; Ernest Fraenkel; Adam Labadorf; Carol J Lam; Katrin Schmelzle; Forest M White
Large-scale discovery of ERK2 substrates identifies ERK-mediated transcriptional regulation by ETV3.
Science signaling 2011;4(196):rs11.
2011: Forest M White
The potential cost of high-throughput proteomics.
Science signaling 2011;4(160):pe8.
2010: Kristen M Naegle; Melissa Gymrek; Brian A Joughin; Joel P Wagner; Roy E Welsch; Michael B Yaffe; Douglas A Lauffenburger; Forest M White
PTMScout, a Web resource for analysis of high throughput post-translational proteomics studies.
Molecular & cellular proteomics : MCP 2010;9(11):2558-70.
2010: Anna-Maria Lahesmaa-Korpinen; Scott M Carlson; Forest M White; Sampsa Hautaniemi
Integrated data management and validation platform for phosphorylated tandem mass spectrometry data.
Proteomics 2010;10(19):3515-24.
2010: Joshua F Apgar; David K Witmer; Forest M White; Bruce Tidor
Sloppy models, parameter uncertainty, and the role of experimental design.
Molecular bioSystems 2010;6(10):1890-900.
2010: Jamie B Spangler; Jason R Neil; Sivan Abramovitch; Yosef Yarden; Forest M White; Douglas A Lauffenburger; K Dane Wittrup
Combination antibody treatment down-regulates epidermal growth factor receptor by inhibiting endosomal recycling.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(30):13252-7.
2010: Paul H. Huang; Emily R Miraldi; Alexander M Xu; Vibin A Kundukulam; Amanda M Del Rosario; Ryan A Flynn; Webster K Cavenee; Frank B Furnari; Forest M White
Phosphotyrosine signaling analysis of site-specific mutations on EGFRvIII identifies determinants governing glioblastoma cell growth.
Molecular bioSystems 2010;6(7):1227-37.
2010: Leo K Iwai; Christophe Benoist; Diane Mathis; Forest M White
Quantitative phosphoproteomic analysis of T cell receptor signaling in diabetes prone and resistant mice.
Journal of proteome research 2010;9(6):3135-45.
2010: Amanda M Del Rosario; Forest M White
Quantifying oncogenic phosphotyrosine signaling networks through systems biology.
Current opinion in genetics & development 2010;20(1):23-30.
2009: Caroline Morel; Scott M Carlson; Forest M White; Roger J Davis
Mcl-1 integrates the opposing actions of signaling pathways that mediate survival and apoptosis.
Molecular and cellular biology 2009;29(14):3845-52.
2009: Anna L Stevens; John S Wishnok; Forest M White; Alan J Grodzinsky; Steven R Tannenbaum
Mechanical injury and cytokines cause loss of cartilage integrity and upregulate proteins associated with catabolism, immunity, inflammation, and repair.
Molecular & cellular proteomics : MCP 2009;8(7):1475-89.
2009: Paul H. Huang; Alexander M Xu; Forest M White
Oncogenic EGFR signaling networks in glioma.
Science signaling 2009;2(87):re6.
2009: Amy M Nichols; Forest M White
Manual validation of peptide sequence and sites of tyrosine phosphorylation from MS/MS spectra.
Methods in molecular biology (Clifton, N.J.) 2009;492():143-60.
2008: Aleksandra Nita-Lazar; Hideshiro Saito-Benz; Forest M White
Quantitative phosphoproteomics by mass spectrometry: past, present, and future.
Proteomics 2008;8(21):4433-43.
2008: Paul H. Huang; Forest M White
Phosphoproteomics: unraveling the signaling web.
Molecular cell 2008;31(6):777-81.
2008: Forest M White
Quantitative phosphoproteomic analysis of signaling network dynamics.
Current opinion in biotechnology 2008;19(4):404-9.
2008: Joshua F Apgar; Jared E Toettcher; Drew Endy; Forest M White; Bruce Tidor
Stimulus design for model selection and validation in cell signaling.
PLoS computational biology 2008;4(2):e30.
2007: Paul H. Huang; Webster K Cavenee; Frank B Furnari; Forest M White
Uncovering therapeutic targets for glioblastoma: a systems biology approach.
Cell cycle (Georgetown, Tex.) 2007;6(22):2750-4.
2007: Forest M White
On the iTRAQ of kinase inhibitors.
Nature biotechnology 2007;25(9):994-6.
2007: Paul H. Huang; Akitake Mukasa; Rudy Bonavia; Ryan A Flynn; Zachary E Brewer; Webster K Cavenee; Frank B Furnari; Forest M White
Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12867-72.
2007: Alejandro Wolf-Yadlin; Sampsa Hautaniemi; Douglas A Lauffenburger; Forest M White
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(14):5860-5.
2007: Erik W Wilker; Marcel A T M van Vugt; Steven A Artim; Paul H. Huang; Christian P. Petersen; H Christian Reinhardt; Yun Feng; Phillip A Sharp; Nahum Sonenberg; Forest M White; Michael B Yaffe
14-3-3sigma controls mitotic translation to facilitate cytokinesis.
Nature 2007;446(7133):329-32.
2007: Neil Kumar; Alejandro Wolf-Yadlin; Forest M White; Douglas A Lauffenburger
Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data.
PLoS computational biology 2007;3(1):e4.
2007: Yi Zhang; Alejandro Wolf-Yadlin; Forest M White
Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks.
Methods in molecular biology (Clifton, N.J.) 2007;359():203-12.
2007: Michael B Yaffe; Forest M White
Signaling netwErks get the global treatment.
Genome biology 2007;8(1):202.
2006: Steven R Tannenbaum; Forest M White
Regulation and specificity of S-nitrosylation and denitrosylation.
ACS chemical biology 2006;1(10):615-8.
2006: John G Albeck; Gavin MacBeath; Forest M White; Peter K Sorger; Douglas A Lauffenburger; Suzanne Gaudet
Collecting and organizing systematic sets of protein data.
Nature reviews. Molecular cell biology 2006;7(11):803-12.
2006: Katrin Schmelzle; Susan Kane; Scott Gridley; Gustav E Lienhard; Forest M White
Temporal dynamics of tyrosine phosphorylation in insulin signaling.
Diabetes 2006;55(8):2171-9.
2006: Katrin Schmelzle; Forest M White
Phosphoproteomic approaches to elucidate cellular signaling networks.
Current opinion in biotechnology 2006;17(4):406-14.
2006: Ji-Eun Kim; Forest M White
Quantitative analysis of phosphotyrosine signaling networks triggered by CD3 and CD28 costimulation in Jurkat cells.
Journal of immunology (Baltimore, Md. : 1950) 2006;176(5):2833-43.
2006: Alejandro Wolf-Yadlin; Neil Kumar; Yi Zhang; Sampsa Hautaniemi; Muhammad Zaman; Hyung-Do Kim; Viara Grantcharova; Douglas A Lauffenburger; Forest M White
Effects of HER2 overexpression on cell signaling networks governing proliferation and migration.
Molecular systems biology 2006;2():54.
2006: Katrin Moser; Forest M White
Phosphoproteomic analysis of rat liver by high capacity IMAC and LC-MS/MS.
Journal of proteome research 2006;5(1):98-104.
2005: Yi Zhang; Alejandro Wolf-Yadlin; Phillip L Ross; Darryl Pappin; John Rush; Douglas A Lauffenburger; Forest M White
Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules.
Molecular & cellular proteomics : MCP 2005;4(9):1240-50.
2005: Ji-Eun Kim; Steven R Tannenbaum; Forest M White
Global phosphoproteome of HT-29 human colon adenocarcinoma cells.
Journal of proteome research 2005;4(4):1339-46.
2005: Jonathan R Behr; Yuri Matsumoto; Forest M White; Ram Sasisekharan
Quantification of isomers from a mixture of twelve heparin and heparan sulfate disaccharides using tandem mass spectrometry.
Rapid communications in mass spectrometry : RCM 2005;19(18):2553-62.
2004: Wen G. Chen; Forest M White
Proteomic analysis of cellular signaling.
Expert review of proteomics 2004;1(3):343-54.
2003: Angela L Zarling; Chance John Luckey; Jarrod A Marto; Forest M White; Cynthia J Brame; Anne M Evans; Paul J Lehner; Peter Cresswell; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Tapasin is a facilitator, not an editor, of class I MHC peptide binding.
Journal of immunology (Baltimore, Md. : 1950) 2003;171(10):5287-95.
2003: Samuel D Saibil; Toshiaki Ohteki; Forest M White; Mark Luscher; Arsen Zakarian; Alisha R Elford; Jeffrey Shabanowitz; Hiroshi Nishina; Patrice Hugo; Josef M Penninger; Brian Barber; Donald F Hunt; Pamela S Ohashi
Weak agonist self-peptides promote selection and tuning of virus-specific T cells.
European journal of immunology 2003;33(3):685-96.
2002: John D Lippolis; Forest M White; Jarrod A Marto; Chance John Luckey; Timothy N J Bullock; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets.
Journal of immunology (Baltimore, Md. : 1950) 2002;169(9):5089-97.
2002: Daniel Gioeli; Scott B Ficarro; Jesse J Kwiek; David Aaronson; Mathew Hancock; Andrew D Catling; Forest M White; Robert E Christian; Robert E Settlage; Jeffrey Shabanowitz; Donald F Hunt; Michael J Weber
Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites.
The Journal of biological chemistry 2002;277(32):29304-14.
2002: David C Flyer; Venkatesh Ramakrishna; Cara Miller; Helen Myers; Melanie McDaniel; Karen E Root; Caroline Flournoy; Victor H Engelhard; David H Canaday; Jarrod A Marto; Mark M Ross; Donald F Hunt; Jeffrey Shabanowitz; Forest M White
Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product.
Infection and immunity 2002;70(6):2926-32.
2002: Scott B Ficarro; Mark L McCleland; P Todd Stukenberg; Daniel J Burke; Mark M Ross; Jeffrey Shabanowitz; Donald F Hunt; Forest M White
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae.
Nature biotechnology 2002;20(3):301-5.
2001: Chance John Luckey; Jarrod A Marto; M Partridge; E Hall; Forest M White; John D Lippolis; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors.
Journal of immunology (Baltimore, Md. : 1950) 2001;167(3):1212-21.
2001: Gerald Nepom; John D Lippolis; Forest M White; Susan A Masewicz; Jarrod A Marto; A Herman; Chance John Luckey; B Falk; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard; BS Nepom
Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65).
Proceedings of the National Academy of Sciences of the United States of America 2001;98(4):1763-8.
2000: Angela L Zarling; Scott B Ficarro; Forest M White; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Phosphorylated peptides are naturally processed and presented by major histocompatibility complex class I molecules in vivo.
The Journal of experimental medicine 2000;192(12):1755-62.
2000: V L Crotzer; Robert E Christian; Jill M Brooks; Jeffrey Shabanowitz; Robert E Settlage; Jarrod A Marto; Forest M White; Alan B Rickinson; Donald F Hunt; Victor H Engelhard
Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines.
Journal of immunology (Baltimore, Md. : 1950) 2000;164(12):6120-9.
1999: Richard A Pierce; E D Field; Joke M M den Haan; Jennifer A Caldwell; Forest M White; Jarrod A Marto; W Wang; L M Frost; Els Blokland; C Reinhardus; Jeffrey Shabanowitz; Donald F Hunt; Els Goulmy; Victor H Engelhard
Cutting edge: the HLA-A*0101-restricted HY minor histocompatibility antigen originates from DFFRY and contains a cysteinylated cysteine residue as identified by a novel mass spectrometric technique.
Journal of immunology (Baltimore, Md. : 1950) 1999;163(12):6360-4.