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Paul Whitford

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Physiology

Protein Folding

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Publications

TOP 3
Paul C Whitford
Disorder guides protein function.
Paul C Whitford; Scott C Blanchard; Jamie H D Cate; Kevin Y Sanbonmatsu
Connecting the kinetics and energy landscape of tRNA translocation on the ribosome.
Jeffrey K Noel; Paul C Whitford; José N Onuchic
The shadow map: a general contact definition for capturing the dynamics of biomolecular folding and function.

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All Publications

2013: Paul C Whitford
Disorder guides protein function.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(18):7114-5.
2013: Paul C Whitford; Scott C Blanchard; Jamie H D Cate; Kevin Y Sanbonmatsu
Connecting the kinetics and energy landscape of tRNA translocation on the ribosome.
PLoS computational biology 2013;9(3):e1003003.
2012: Jeffrey K Noel; Paul C Whitford; José N Onuchic
The shadow map: a general contact definition for capturing the dynamics of biomolecular folding and function.
The journal of physical chemistry. B 2012;116(29):8692-702.
2012: Ryan L Hayes; Scott P Hennelly; Udayan Mohanty; Jeffrey K Noel; José N Onuchic; Paul C Whitford; Kevin Y Sanbonmatsu
Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch.
Journal of the American Chemical Society 2012;134(29):12043-53.
2012: Paul C Whitford; Karissa Y Sanbonmatsu; José N Onuchic
Biomolecular dynamics: order-disorder transitions and energy landscapes.
Reports on progress in physics. Physical Society (Great Britain) 2012;75(7):076601.
2012: Aqeel Ahmed; Karissa Y Sanbonmatsu; Paul C Whitford; Florence Tama
Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.
Journal of structural biology 2012;177(2):561-70.
2012: Michael A Jamros; Leandro C Oliveira; José N Onuchic; Paul C Whitford; Joseph A Adams; Patricia A Jennings
Substrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase function.
PLoS computational biology 2012;8(9):e1002695.
2011: Paul C Whitford; Yanan Yu; Christian M T Spahn; Florence Tama; Aqeel Ahmed; Scott P Hennelly; José N Onuchic; Kevin Y Sanbonmatsu
Excited states of ribosome translocation revealed through integrative molecular modeling.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(47):18943-8.
2010: Jeffrey K Noel; Paul C Whitford; Kevin Y Sanbonmatsu; José N Onuchic
SMOG@ctbp: simplified deployment of structure-based models in GROMACS.
Nucleic acids research 2010;38(Web Server issue):W657-61.
2009: Paul C Whitford; Jeffrey K Noel; Shachi Gosavi; Alexander Schug; Kevin Y Sanbonmatsu; José N Onuchic
An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields.
Proteins 2009;75(2):430-41.
2008: Shachi Gosavi; Paul C Whitford; Patricia Jennings; José N Onuchic
Extracting function from a beta-trefoil folding motif.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(30):10384-9.
2008: Paul C Whitford; Shachi Gosavi; José N Onuchic
Conformational transitions in adenylate kinase. Allosteric communication reduces misligation.
The Journal of biological chemistry 2008;283(4):2042-8.
2007: Alexander Schug; Paul C Whitford; Yaakov Levy; José N Onuchic
Mutations as trapdoors to two competing native conformations of the Rop-dimer.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(45):17674-9.
2007: Paul C Whitford; Osamu Miyashita; Yaakov Levy; José N Onuchic
Conformational transitions of adenylate kinase: switching by cracking.
Journal of molecular biology 2007;366(5):1661-71.
2007: Jamie E Mills; Paul C Whitford; Jennifer Shaffer; José N Onuchic; Joseph A Adams; Patricia Jennings
A novel disulfide bond in the SH2 Domain of the C-terminal Src kinase controls catalytic activity.
Journal of molecular biology 2007;365(5):1460-8.