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John Wilbur

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TOP 3
Won Kim; Donald C Comeau; Lana Yeganova; W John Wilbur
Identifying well-formed biomedical phrases in MEDLINE® text.
Lana Yeganova; Donald C Comeau; Won Kim; W John Wilbur
Finding biomedical categories in Medline®.
Sun Kim; W John Wilbur
Thematic clustering of text documents using an EM-based approach.

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All Publications

2012: Won Kim; Donald C Comeau; Lana Yeganova; W John Wilbur
Identifying well-formed biomedical phrases in MEDLINE® text.
Journal of biomedical informatics 2012;45(6):1035-41.
2012: Lana Yeganova; Donald C Comeau; Won Kim; W John Wilbur
Finding biomedical categories in Medline®.
Journal of biomedical semantics 2012;3 Suppl 3():S3.
2012: Sun Kim; W John Wilbur
Thematic clustering of text documents using an EM-based approach.
Journal of biomedical semantics 2012;3 Suppl 3():S6.
2012: Sun Kim; Dongseop Kwon; Soo-Yong Shin; W John Wilbur
PIE the search: searching PubMed literature for protein interaction information.
Bioinformatics (Oxford, England) 2012;28(4):597-8.
2012: Sun Kim; Won Kim; Zhiyong Lu; Chih-Hsuan Wei; W John Wilbur
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information.
Database : the journal of biological databases and curation 2012;2012():bas042.
2012: Aurélie Névéol; W John Wilbur; Zhiyong Lu
Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE.
Database : the journal of biological databases and curation 2012;2012():bas026.
2011: Aurélie Névéol; W John Wilbur; Zhiyong Lu
Extraction of data deposition statements from the literature: a method for automatically tracking research results.
Bioinformatics (Oxford, England) 2011;27(23):3306-12.
2011: Lana Yeganova; Donald C Comeau; W John Wilbur
Machine learning with naturally labeled data for identifying abbreviation definitions.
BMC bioinformatics 2011;12 Suppl 3():S6.
2011: W John Wilbur; Won Kim
Improving a gold standard: treating human relevance judgments of MEDLINE document pairs.
BMC bioinformatics 2011;12 Suppl 3():S5.
2009: Zhiyong Lu; Natalie Xie; W John Wilbur
Identifying related journals through log analysis.
Bioinformatics (Oxford, England) 2009;25(22):3038-9.
2009: Larry H Smith; W John Wilbur
The value of parsing as feature generation for gene mention recognition.
Journal of biomedical informatics 2009;42(5):895-904.
2009: Zhiyong Lu; W John Wilbur
Improving accuracy for identifying related PubMed queries by an integrated approach.
Journal of biomedical informatics 2009;42(5):831-8.
2009: Zhiyong Lu; W John Wilbur; Johanna R McEntyre; Alexey Iskhakov; Lee Szilagyi
Finding query suggestions for PubMed.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2009;2009():396-400.
2008: Sunghwan Sohn; Won Kim; Donald C Comeau; W John Wilbur
Optimal training sets for Bayesian prediction of MeSH assignment.
Journal of the American Medical Informatics Association : JAMIA 2008;15(4):546-53.
2008: Sunghwan Sohn; Donald C Comeau; Won Kim; W John Wilbur
Abbreviation definition identification based on automatic precision estimates.
BMC bioinformatics 2008;9():402.
2007: Hong Yu; Won Kim; Vasileios Hatzivassiloglou; W John Wilbur
Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles.
Journal of biomedical informatics 2007;40(2):150-9.
2006: Lorraine Tanabe; Lynne H Thom; Wayne Matten; Donald C Comeau; W John Wilbur
SemCat: semantically categorized entities for genomics.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():754-8.
2006: W John Wilbur; Andrey Rzhetsky; Hagit Shatkay
New directions in biomedical text annotation: definitions, guidelines and corpus construction.
BMC bioinformatics 2006;7():356.
2005: Won Kim; W John Wilbur
A strategy for assigning new concepts in the MEDLINE database.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():395-9.
2005: Lorraine Tanabe; Natalie Xie; Lynne H Thom; Wayne Matten; W John Wilbur
GENETAG: a tagged corpus for gene/protein named entity recognition.
BMC bioinformatics 2005;6 Suppl 1():S3.
2004: L Smith; W John Wilbur
Retrieving definitional content for ontology development.
Computational biology and chemistry 2004;28(5-6):387-91.
2004: L Smith; Thomas C Rindflesch; W John Wilbur
MedPost: a part-of-speech tagger for bioMedical text.
Bioinformatics (Oxford, England) 2004;20(14):2320-1.
2004: L Yeganova; L Smith; W John Wilbur
Identification of related gene/protein names based on an HMM of name variations.
Computational biology and chemistry 2004;28(2):97-107.
2004: Andrey Rzhetsky; Ivan Iossifov; Tomohiro Koike; Michael Krauthammer; Pauline Kra; Mitzi Morris; Hong Yu; Pablo Ariel Duboué; Wubin Weng; W John Wilbur; Vasileios Hatzivassiloglou; Carol Friedman
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.
Journal of biomedical informatics 2004;37(1):43-53.
2004: Lorraine Tanabe; W John Wilbur
Generation of a large gene/protein lexicon by morphological pattern analysis.
Journal of bioinformatics and computational biology 2004;1(4):611-26.
2003: L Smith; L Yeganova; W John Wilbur
Hidden Markov models and optimized sequence alignments.
Computational biology and chemistry 2003;27(1):77-84.
2003: W John Wilbur; Won Kim
The dimensions of indexing.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():714-0.
2002: Hong Yu; Vasileios Hatzivassiloglou; Andrey Rzhetsky; W John Wilbur
Automatically identifying gene/protein terms in MEDLINE abstracts.
Journal of biomedical informatics 2002;35(5-6):322-30.
2002: Lorraine Tanabe; W John Wilbur
Tagging gene and protein names in biomedical text.
Bioinformatics (Oxford, England) 2002;18(8):1124-32.
2002: Hong Yu; Vasileios Hatzivassiloglou; Carol Friedman; Andrey Rzhetsky; W John Wilbur
Automatic extraction of gene and protein synonyms from MEDLINE and journal articles.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():919-23.
2002: W John Wilbur
A thematic analysis of the AIDS literature.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():386-97.
2001: W Kim; W John Wilbur
Amino acid residue environments and predictions of residue type.
Computers & chemistry 2001;25(4):411-22.
2001: Won Kim; Alan R Aronson; W John Wilbur
Automatic MeSH term assignment and quality assessment.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():319-23.
2000: Won Kim; W John Wilbur
Corpus-based statistical screening for phrase identification.
Journal of the American Medical Informatics Association : JAMIA 2000;7(5):499-511.
2000: W John Wilbur
Boosting naïve Bayesian learning on a large subset of MEDLINE.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():918-22.
2000: Alan R Aronson; Olivier Bodenreider; Hua Florence Chang; Susanne M Humphrey; James G Mork; Stuart Nelson; Thomas C Rindflesch; W John Wilbur
The NLM Indexing Initiative.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():17-21.
2000: Hagit Shatkay; Stephen Wilton Edwards; W John Wilbur; Mark S Boguski
Genes, themes and microarrays: using information retrieval for large-scale gene analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():317-28.
2000: W John Wilbur; Andrew F. Neuwald
A theory of information with special application to search problems.
Computers & chemistry 2000;24(1):33-42.
1999: W John Wilbur; G F Hazard; Guy Divita; James G Mork; Alan R Aronson; Allen C Browne
Analysis of biomedical text for chemical names: a comparison of three methods.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():176-80.
1998: M S Chung; Andrew F. Neuwald; W John Wilbur
A free energy analysis by unfolding applied to 125-mers on a cubic lattice.
Folding & design 1998;3(1):51-65.
1996: W John Wilbur; Y Yang
An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts.
Computers in biology and medicine 1996;26(3):209-22.
1996: W John Wilbur; François Major; John L Spouge; S Bryant
The statistics of unique native states for random peptides.
Biopolymers 1996;38(4):447-59.
1991: David Lipman; W John Wilbur
Modelling neutral and selective evolution of protein folding.
Proceedings. Biological sciences / The Royal Society 1991;245(1312):7-11.
1984: David Lipman; W John Wilbur; T F Smith; M S Waterman
On the statistical significance of nucleic acid similarities.
Nucleic acids research 1984;12(1 Pt 1):215-26.
1984: David Lipman; W John Wilbur
Interaction of silent and replacement changes in eukaryotic coding sequences.
Journal of molecular evolution 1984;21(2):161-7.
1983: W John Wilbur; David Lipman
Rapid similarity searches of nucleic acid and protein data banks.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(3):726-30.
1983: David Lipman; W John Wilbur
Contextual constraints on synonymous codon choice.
Journal of molecular biology 1983;163(3):363-76.