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Daniel Wilson

Research Profile

Anatomy

Ribosomes

Concepts & Ideas

Physiology

Protein Biosynthesis

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Chemicals & Drugs

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Cryoelectron Microscopy

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Publications

TOP 3
Andreas M Anger; Jean-Paul Armache; Otto Berninghausen; Michael Habeck; Marion Subklewe; Daniel N Wilson; Roland Beckmann
Structures of the human and Drosophila 80S ribosome.
Lasse Jenner; Aleksandra Mikolajka; Agata Starosta; Daniel S Terry; Daniel N Wilson; marat yusupov; Scott C Blanchard; Liudmila Filonava; Gulnara Yusupova
Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.
Christopher J Woolstenhulme; Nicholas R Guydosh; David W Healey; W Evan Johnson; Shankar Parajuli; E Nicholas Petersen; Agata Starosta; Diana P Valverde; Daniel N Wilson; Allen R Buskirk
Nascent peptides that block protein synthesis in bacteria.

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All Publications

2013: Andreas M Anger; Jean-Paul Armache; Otto Berninghausen; Michael Habeck; Marion Subklewe; Daniel N Wilson; Roland Beckmann
Structures of the human and Drosophila 80S ribosome.
Nature 2013;497(7447):80-5.
2013: Lasse Jenner; Aleksandra Mikolajka; Agata Starosta; Daniel S Terry; Daniel N Wilson; marat yusupov; Scott C Blanchard; Liudmila Filonava; Gulnara Yusupova
Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(10):3812-6.
2013: Christopher J Woolstenhulme; Nicholas R Guydosh; David W Healey; W Evan Johnson; Shankar Parajuli; E Nicholas Petersen; Agata Starosta; Diana P Valverde; Daniel N Wilson; Allen R Buskirk
Nascent peptides that block protein synthesis in bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(10):E878-87.
2013: Susanne Ude; Daniel N Wilson; Tobias Kraxenberger; Jürgen Lassak; Agata Starosta; Kirsten Jung
Translation elongation factor EF-P alleviates ribosome stalling at polyproline stretches.
Science (New York, N.Y.) 2013;339(6115):82-5.
2013: Jean-Paul Armache; Georg J Arnold; Roland Beckmann; Otto Berninghausen; Sibylle Franckenberg; Thomas Fröhlich; Viter Márquez; Michael Thomm; Elizabeth Villa; Andreas M Anger; Daniel N Wilson
Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.
Nucleic acids research 2013;41(2):1284-93.
2012: Alexandra Dönhöfer; Sibylle Franckenberg; Stephan Wickles; Roland Beckmann; Otto Berninghausen; Daniel N Wilson
Structural basis for TetM-mediated tetracycline resistance.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(42):16900-5.
2012: Lauri Peil; Jaanus Remme; Agata L Starosta; Tanel Tenson; Kai Virumäe; Gemma C Atkinson; Daniel N Wilson
Lys34 of translation elongation factor EF-P is hydroxylated by YfcM.
Nature chemical biology 2012;8(8):695-7.
2012: Trudy H Grossman; Aleksandra Mikolajka; William O'Brien; David M Rothstein; Agata Starosta; Corey Fyfe; Daniel N Wilson; Joyce A Sutcliffe
Target- and resistance-based mechanistic studies with TP-434, a novel fluorocycline antibiotic.
Antimicrobial agents and chemotherapy 2012;56(5):2559-64.
2011: Aleksandra Mikolajka; Hanqing Liu; Yuanwei Chen; Agata Starosta; Viter Márquez; Marina Ivanova; Barry S Cooperman; Daniel N Wilson
Differential effects of thiopeptide and orthosomycin antibiotics on translational GTPases.
Chemistry & biology 2011;18(5):589-600.
2011: Triinu Siibak; Lauri Peil; Alexandra Dönhöfer; Age Tats; Maido Remm; Daniel N Wilson; Tanel Tenson; Jaanus Remme
Antibiotic-induced ribosomal assembly defects result from changes in the synthesis of ribosomal proteins.
Molecular microbiology 2011;80(1):54-67.
2011: Daniel N Wilson
Peptides in the ribosomal tunnel talk back.
Molecular cell 2011;41(3):247-8.
2011: Viter Márquez; Thomas Fröhlich; Jean-Paul Armache; Daniel Sohmen; Alexandra Dönhöfer; Aleksandra Mikolajka; Otto Berninghausen; Michael Thomm; Roland Beckmann; Georg J Arnold; Daniel N Wilson
Proteomic characterization of archaeal ribosomes reveals the presence of novel archaeal-specific ribosomal proteins.
Journal of molecular biology 2011;405(5):1215-32.
2011: Shashi Bhushan; Thomas Hoffmann; Birgit Seidelt; Jens Frauenfeld; Thorsten Mielke; Otto Berninghausen; Daniel N Wilson; Roland Beckmann
SecM-stalled ribosomes adopt an altered geometry at the peptidyl transferase center.
PLoS biology 2011;9(1):e1000581.
2010: Andreas H Ratje; Justus Loerke; Aleksandra Mikolajka; Matthias Brünner; Peter W Hildebrand; Agata L Starosta; Alexandra Dönhöfer; Sean connell; Paola Fucini; Thorsten Mielke; Paul C Whitford; José N Onuchic; Yanan Yu; Karissa Y Sanbonmatsu; Roland K Hartmann; Pawel A Penczek; Daniel N Wilson; Christian M T Spahn
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites.
Nature 2010;468(7324):713-6.
2010: Jean-Paul Armache; Alexander Jarasch; Andreas M Anger; Elizabeth Villa; Thomas Becker; Shashi Bhushan; Fabrice Jossinet; Michael Habeck; Gülcin Dindar; Sibylle Franckenberg; Viter Marquez; Thorsten Mielke; Michael Thomm; Otto Berninghausen; Birgitta Beatrix; Johannes Söding; Eric Westhof; Daniel N Wilson; Roland Beckmann
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(46):19748-53.
2010: Jean-Paul Armache; Alexander Jarasch; Andreas M Anger; Elizabeth Villa; Thomas Becker; Shashi Bhushan; Fabrice Jossinet; Michael Habeck; Gülcin Dindar; Sibylle Franckenberg; Viter Marquez; Thorsten Mielke; Michael Thomm; Otto Berninghausen; Birgitta Beatrix; Johannes Söding; Eric Westhof; Daniel N Wilson; Roland Beckmann
Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(46):19754-9.
2010: Shashi Bhushan; Helge Meyer; Agata Starosta; Thomas Becker; Thorsten Mielke; Otto Berninghausen; Michael Sattler; Daniel N Wilson; Roland Beckmann
Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide.
Molecular cell 2010;40(1):138-46.
2010: Agata Starosta; Viktoriya V Karpenko; Anna V Shishkina; Aleksandra Mikolajka; Natalia V Sumbatyan; Frank Schluenzen; Galina A Korshunova; Alexey A Bogdanov; Daniel N Wilson
Interplay between the ribosomal tunnel, nascent chain, and macrolides influences drug inhibition.
Chemistry & biology 2010;17(5):504-14.
2010: Shashi Bhushan; Marco Gartmann; Mario Halic; Jean-Paul Armache; Alexander Jarasch; Thorsten Mielke; Otto Berninghausen; Daniel N Wilson; Roland Beckmann
alpha-Helical nascent polypeptide chains visualized within distinct regions of the ribosomal exit tunnel.
Nature structural & molecular biology 2010;17(3):313-7.
2009: Birgit Seidelt; C Axel Innis; Daniel N Wilson; Marco Gartmann; Jean-Paul Armache; Elizabeth Villa; Leonardo G Trabuco; Thomas Becker; Thorsten Mielke; Klaus Schulten; Thomas A Steitz; Roland Beckmann
Structural insight into nascent polypeptide chain-mediated translational stalling.
Science (New York, N.Y.) 2009;326(5958):1412-5.
2009: Vidya Dhote; Agata Starosta; Daniel N Wilson; Kevin A Reynolds
The final step of hygromycin A biosynthesis, oxidation of C-5''-dihydrohygromycin A, is linked to a putative proton gradient-dependent efflux.
Antimicrobial agents and chemotherapy 2009;53(12):5163-72.
2009: Nadaraj Palaniappan; Vidya Dhote; Sloan Ayers; Agata Starosta; Daniel N Wilson; Kevin A Reynolds
Biosynthesis of the aminocyclitol subunit of hygromycin A in Streptomyces hygroscopicus NRRL 2388.
Chemistry & biology 2009;16(11):1180-9.
2009: Daniel N Wilson
The A-Z of bacterial translation inhibitors.
Critical reviews in biochemistry and molecular biology 2009;44(6):393-433.
2009: Agata Starosta; Haiou Qin; Aleksandra Mikolajka; Gulice Y C Leung; Kathrin Schwinghammer; Kyriacos C Nicolaou; David Y-K Chen; Barry S Cooperman; Daniel N Wilson
Identification of distinct thiopeptide-antibiotic precursor lead compounds using translation machinery assays.
Chemistry & biology 2009;16(10):1087-96.
2009: Daniel Sohmen; Joerg M Harms; Frank Schlünzen; Daniel N Wilson
Enhanced SnapShot: Antibiotic inhibition of protein synthesis II.
Cell 2009;139(1):212-212.e1.
2009: Ekaterini C Kouvela; Dimitrios L Kalpaxis; Daniel N Wilson; George P Dinos
Distinct mode of interaction of a novel ketolide antibiotic that displays enhanced antimicrobial activity.
Antimicrobial agents and chemotherapy 2009;53(4):1411-9.
2009: Daniel N Wilson
Less is more for leaderless mRNA translation.
Molecular cell 2009;33(2):141-2.
2009: Alexandros D Petropoulos; Ekaterini C Kouvela; Agata Starosta; Daniel N Wilson; George P Dinos; Dimitrios L Kalpaxis
Time-resolved binding of azithromycin to Escherichia coli ribosomes.
Journal of molecular biology 2009;385(4):1179-92.
2008: Daniel N Wilson; Frank Schluenzen; Joerg M Harms; Agata Starosta; Sean connell; Paola Fucini
The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(36):13339-44.
2008: Sean connell; Maya Topf; Yan Qin; Daniel N Wilson; Thorsten Mielke; Paola Fucini; Knud H Nierhaus; Christian M T Spahn
A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation.
Nature structural & molecular biology 2008;15(9):910-5.
2008: Viviana Di Giacco; Viter Márquez; Yan Qin; Markus Pech; Francisco J Triana-Alonso; Daniel N Wilson; Knud H Nierhaus
Shine-Dalgarno interaction prevents incorporation of noncognate amino acids at the codon following the AUG.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(31):10715-20.
2008: Witold Szaflarski; Oliver Vesper; Yoshika Teraoka; Beata Plitta; Daniel N Wilson; Knud H Nierhaus
New features of the ribosome and ribosomal inhibitors: non-enzymatic recycling, misreading and back-translocation.
Journal of molecular biology 2008;380(1):193-205.
2007: Manjuli R Sharma; Daniel N Wilson; Partha Datta; Chandana Barat; Frank Schluenzen; Paola Fucini; Rajendra K Agrawal
Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(49):19315-20.
2007: Partha Datta; Daniel N Wilson; Masahito Kawazoe; Neil K Swami; Tatsuya Kaminishi; Manjuli R Sharma; Timothy M Booth; Chie Takemoto; Paola Fucini; Shigeyuki Yokoyama; Rajendra K Agrawal
Structural aspects of RbfA action during small ribosomal subunit assembly.
Molecular cell 2007;28(3):434-45.
2007: Daniel N Wilson; Knud H Nierhaus
The oxazolidinone class of drugs find their orientation on the ribosome.
Molecular cell 2007;26(4):460-2.
2007: Daniel N Wilson; Knud H Nierhaus
The weird and wonderful world of bacterial ribosome regulation.
Critical reviews in biochemistry and molecular biology 2007;42(3):187-219.
2007: Sean connell; Chie Takemoto; Daniel N Wilson; Hongfei Wang; Kazutaka Murayama; Takaho Terada; Mikako Shirouzu; Maximilian Rost; Martin Schüler; Jan Giesebrecht; Marylena Dabrowski; Thorsten Mielke; Paola Fucini; Shigeyuki Yokoyama; Christian M T Spahn
Structural basis for interaction of the ribosome with the switch regions of GTP-bound elongation factors.
Molecular cell 2007;25(5):751-64.
2007: Tatsuya Kaminishi; Daniel N Wilson; Chie Takemoto; Jörg M Harms; Masahito Kawazoe; Frank Schluenzen; Kyoko Hanawa-Suetsugu; Mikako Shirouzu; Paola Fucini; Shigeyuki Yokoyama
A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction.
Structure (London, England : 1993) 2007;15(3):289-97.
2006: Daniel N Wilson; Knud H Nierhaus
The E-site story: the importance of maintaining two tRNAs on the ribosome during protein synthesis.
Cellular and molecular life sciences : CMLS 2006;63(23):2725-37.
2006: Yan Qin; Norbert Polacek; Oliver Vesper; Eike Staub; Edda Einfeldt; Daniel N Wilson; Knud H Nierhaus
The highly conserved LepA is a ribosomal elongation factor that back-translocates the ribosome.
Cell 2006;127(4):721-33.
2006: Frank Schluenzen; Chie Takemoto; Daniel N Wilson; Tatsuya Kaminishi; Jörg M Harms; Kyoko Hanawa-Suetsugu; Witold Szaflarski; Masahito Kawazoe; Mikako Shirouzu; Mikako Shirouzo; Knud H Nierhaus; Shigeyuki Yokoyama; Paola Fucini
The antibiotic kasugamycin mimics mRNA nucleotides to destabilize tRNA binding and inhibit canonical translation initiation.
Nature structural & molecular biology 2006;13(10):871-8.
2006: Panagiotis Karahalios; Dimitrios L Kalpaxis; Hong Fu; Leonard Katz; Daniel N Wilson; George P Dinos
On the mechanism of action of 9-O-arylalkyloxime derivatives of 6-O-mycaminosyltylonolide, a new class of 16-membered macrolide antibiotics.
Molecular pharmacology 2006;70(4):1271-80.
2006: Oliver Vesper; Daniel N Wilson
[Ribosome recycling revisited].
Molekuliarnaia biologiia 2006;40(4):742-50.
2006: Hyuk-Soo Seo; Sameem Abedin; Detlev Kamp; Daniel N Wilson; Knud H Nierhaus; Barry S Cooperman
EF-G-dependent GTPase on the ribosome. conformational change and fusidic acid inhibition.
Biochemistry 2006;45(8):2504-14.
2005: Daniel N Wilson; Jörg M Harms; Knud H Nierhaus; Frank Schlünzen; Paola Fucini
Species-specific antibiotic-ribosome interactions: implications for drug development.
Biological chemistry 2005;386(12):1239-52.
2005: Frank Schlünzen; Daniel N Wilson; Pingsheng Tian; Jörg M Harms; Stuart J McInnes; Harly Andreas Smedemark Hansen; Renate Albrecht; Jörg Buerger; Sigurd M Wilbanks; Paola Fucini
The binding mode of the trigger factor on the ribosome: implications for protein folding and SRP interaction.
Structure (London, England : 1993) 2005;13(11):1685-94.
2005: Daniel N Wilson; Knud H Nierhaus
Ribosomal proteins in the spotlight.
Critical reviews in biochemistry and molecular biology 2005;40(5):243-67.
2005: Manjuli R Sharma; Chandana Barat; Daniel N Wilson; Timothy M Booth; Masahito Kawazoe; Chie Hori-Takemoto; Mikako Shirouzu; Shigeyuki Yokoyama; Paola Fucini; Rajendra K Agrawal
Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly.
Molecular cell 2005;18(3):319-29.
2005: Daniel N Wilson; Knud H Nierhaus
RelBE or not to be.
Nature structural & molecular biology 2005;12(4):282-4.
2005: Daniel N Wilson; Frank Schluenzen; Jörg M Harms; Takuya Yoshida; Tadayasu Ohkubo; Renate Albrecht; Joerg Buerger; Yuji Kobayashi; Paola Fucini
X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit.
The EMBO journal 2005;24(2):251-60.
2005: George P Dinos; Dimitrios L Kalpaxis; Daniel N Wilson; Knud H Nierhaus
Deacylated tRNA is released from the E site upon A site occupation but before GTP is hydrolyzed by EF-Tu.
Nucleic acids research 2005;33(16):5291-6.
2004: Daniel N Wilson; Knud H Nierhaus
The how and Y of cold shock.
Nature structural & molecular biology 2004;11(11):1026-8.
2004: Viter Márquez; Daniel N Wilson; Warren P Tate; Francisco Triana-Alonso; Knud H Nierhaus
Maintaining the ribosomal reading frame: the influence of the E site during translational regulation of release factor 2.
Cell 2004;118(1):45-55.
2004: Alexandros D Petropoulos; Maria A Xaplanteri; George P Dinos; Daniel N Wilson; Dimitrios L Kalpaxis
Polyamines affect diversely the antibiotic potency: insight gained from kinetic studies of the blasticidin S AND spiramycin interactions with functional ribosomes.
The Journal of biological chemistry 2004;279(25):26518-25.
2004: George P Dinos; Daniel N Wilson; Yoshika Teraoka; Witold Szaflarski; Paola Fucini; Dimitrios L Kalpaxis; Knud H Nierhaus
Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: the universally conserved residues G693 and C795 regulate P-site RNA binding.
Molecular cell 2004;13(1):113-24.
2003: Daniel N Wilson; Knud H Nierhaus
The ribosome through the looking glass.
Angewandte Chemie (International ed. in English) 2003;42(30):3464-86.
2003: Debbie-Jane G Scarlett; Kim K McCaughan; Daniel N Wilson; Warren P Tate
Mapping functionally important motifs SPF and GGQ of the decoding release factor RF2 to the Escherichia coli ribosome by hydroxyl radical footprinting. Implications for macromolecular mimicry and structural changes in RF2.
The Journal of biological chemistry 2003;278(17):15095-104.
2003: Gregor Blaha; Daniel N Wilson; Gerlind Stoller; Gunter Fischer; Regine Willumeit; Knud H Nierhaus
Localization of the trigger factor binding site on the ribosomal 50S subunit.
Journal of molecular biology 2003;326(3):887-97.
2003: Elizabeth S Poole; Marjan E Askarian-Amiri; Louise L Major; Kim K McCaughan; Debbie-Jane G Scarlett; Daniel N Wilson; Warren P Tate
Molecular mimicry in the decoding of translational stop signals.
Progress in nucleic acid research and molecular biology 2003;74():83-121.
2002: Thomas M Wendrich; Gregor Blaha; Daniel N Wilson; Mohamed A Marahiel; Knud H Nierhaus
Dissection of the mechanism for the stringent factor RelA.
Molecular cell 2002;10(4):779-88.
2002: Markus A Schäfer; A Ozlem Tastan; Sebastian Patzke; Gregor Blaha; Christian M T Spahn; Daniel N Wilson; Knud H Nierhaus
Codon-anticodon interaction at the P site is a prerequisite for tRNA interaction with the small ribosomal subunit.
The Journal of biological chemistry 2002;277(21):19095-105.
2002: V Márquez; Daniel N Wilson; Knud H Nierhaus
Functions and interplay of the tRNA-binding sites of the ribosome.
Biochemical Society transactions 2002;30(2):133-40.
2002: Daniel N Wilson; Gregor Blaha; Sean connell; Pavel Ivanov; Holger Jenke; Ulrich Stelzl; Yoshika Teraoka; Knud H Nierhaus
Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.
Current protein & peptide science 2002;3(1):1-53.
2000: Daniel N Wilson; Diane Guévremont; Warren P Tate
The ribosomal binding and peptidyl-tRNA hydrolysis functions of Escherichia coli release factor 2 are linked through residue 246.
RNA (New York, N.Y.) 2000;6(12):1704-13.
1999: Warren P Tate; JB Mansell; SA Mannering; J H Irvine; Louise L Major; Daniel N Wilson
UGA: a dual signal for 'stop' and for recoding in protein synthesis.
Biochemistry. Biokhimii͡a 1999;64(12):1342-53.